BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09180.1
Length=737
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471006 jgi|Araly1|471006|fgenesh2_kg.1__960__AT1G09180.1 928 0.0
Ahg337811 jgi|Araly1|337811|fgenesh1_pg.C_scaffold_1004376 294 5e-79
> Ahg471006 jgi|Araly1|471006|fgenesh2_kg.1__960__AT1G09180.1
Length=659
Score = 928 bits (502), Expect = 0.0
Identities = 583/622 (94%), Gaps = 6/622 (1%)
Strand=Plus/Plus
Query 88 TGTGTGGATTATAATCCGATATCAGGAAGAAGACGTCATGTTTTTATTCGATTGGTTCTA 147
|||||||||| |||| ||| | ||||||| |||||||||||||| || |||||||||||
Sbjct 41 TGTGTGGATTCTAATTAGATCTGAGGAAGACGACGTCATGTTTTTGTTTGATTGGTTCTA 100
Query 148 TGGAATCTTGGCCTCGTTAGGGTTGT-GCAAAAAAGAGGCGAAAATCTTGTTTTTAGGCC 206
|||||| || || |||||||| |||| || | ||||| ||||| ||||||||| ||||||
Sbjct 101 TGGAATATTTGCGTCGTTAGGTTTGTGGC-AGAAAGAAGCGAAGATCTTGTTTCTAGGCC 159
Query 207 TCGACAATGCCGGAAAAACTACTTTGCTTCACATGCTCAAAGATGAGAGATTAGTTCAGC 266
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 160 TCGACAATGCCGGAAAAACTACTTTACTTCACATGCTCAAAGACGAGAGATTAGTTCAGC 219
Query 267 ACCAGCCAACACAGCATCCCACGTCTGAGGAACTTAGCATTGGCAAAATCAACTTCAAGG 326
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 220 ACCAGCCAACACAGCATCCCACGTCTGAGGAACTTAGCATTGGCAAAATCAAGTTCAAGG 279
Query 327 CCTTTGATTTGGGTGGCCATCAGATTGCTCGTAGGGTTTGGAAAGACTGCTATGCCAAGG 386
|||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct 280 CCTTTGATTTGGGTGGCCATCAGATTGCTCGTCGGGTTTGGAAAGATTACTATGCCAAGG 339
Query 387 TTGATGCTGTTGTCTACCTAGTGGATGCTTACGACAGGGATAGATTTGTGGAGTCGAAAA 446
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 340 TTGATGCTGTTGTCTACCTTGTGGATGCTTACGACAGGGAGAGATTTGTGGAGTCGAAAA 399
Query 447 GAGAGCTAGACGCTCTTTTATCAGATGAAGCCTTAGCAAATGTTCCCTGTCTTATTCTTG 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GAGAGCTAGACGCTCTTTTATCAGATGAAGCCTTAGCAAATGTTCCCTGTCTTATTCTTG 459
Query 507 GCAACAAGATTGATATACCTTATGCATCCTCAGAAGATGAGCTTAGGTATTACTTAGGTC 566
|||||||||||||||| |||||||||||||||||||||||||| |||||| |||| ||||
Sbjct 460 GCAACAAGATTGATATTCCTTATGCATCCTCAGAAGATGAGCTCAGGTATCACTTGGGTC 519
Query 567 TCACCAATTTCACTACCGGTAAAGGCA-TAGTGAATCTTGAAGACTCTGGTGTTCGTCCC 625
||||||||||||||||||||||||||| | || | ||||||| |||||||||||||||||
Sbjct 520 TCACCAATTTCACTACCGGTAAAGGCAAT-GTCAGTCTTGAAAACTCTGGTGTTCGTCCC 578
Query 626 CTTGAGGTCTTCATGTGCAGCATCGTCCGCAAAATGGGTTATGGCGA-GGGTTTTAAATG 684
|||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 579 CTTGAGGTCTTCATGTGCAGCATCGTCCGCAAAATGGGTTATGGTGAAGGGTTC-AAATG 637
Query 685 GCTATCTCAGTATATCAAGTAG 706
||||||||||||||||||||||
Sbjct 638 GCTATCTCAGTATATCAAGTAG 659
> Ahg337811 jgi|Araly1|337811|fgenesh1_pg.C_scaffold_1004376
Length=633
Score = 294 bits (159), Expect = 5e-79
Identities = 229/263 (87%), Gaps = 4/263 (2%)
Strand=Plus/Plus
Query 125 ATGTTTTTATTCGATTGGTTCTATGGAATCTTGGCCTCGTTAGGGTTGT-GCAAAAAAGA 183
||||| || |||||||||||||| |||||||| |||||||||||||| | || |||||||
Sbjct 1 ATGTTCTTGTTCGATTGGTTCTACGGAATCTTAGCCTCGTTAGGGTTATGGC-AAAAAGA 59
Query 184 GGCGAAA-ATCTTGTTTTTAGGCCTCGACAATGCCGGAAAAACTACTTTGCTTCACATGC 242
|| ||| ||||||||| | || ||||| ||||| || ||||| || || ||||||||||
Sbjct 60 AGC-AAAGATCTTGTTTCTCGGACTCGATAATGCTGGCAAAACCACCTTACTTCACATGC 118
Query 243 TCAAAGATGAGAGATTAGTTCAGCACCAGCCAACACAGCATCCCACGTCTGAGGAACTTA 302
||||||| ||||||||||||||||| ||||| || || ||||| |||||||| |||||||
Sbjct 119 TCAAAGACGAGAGATTAGTTCAGCATCAGCCGACGCAACATCCAACGTCTGAAGAACTTA 178
Query 303 GCATTGGCAAAATCAACTTCAAGGCCTTTGATTTGGGTGGCCATCAGATTGCTCGTAGGG 362
| ||||| ||||| || |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 179 GTATTGGGAAAATAAAGTTCAAGGCTTTTGATTTGGGTGGTCATCAGATTGCTCGTAGGG 238
Query 363 TTTGGAAAGACTGCTATGCCAAG 385
|||||||||| | ||||||||||
Sbjct 239 TTTGGAAAGATTACTATGCCAAG 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27143516904
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5