BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09190.1
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311964 jgi|Araly1|311964|fgenesh1_pm.C_scaffold_1000744 1927 0.0
> Ahg311964 jgi|Araly1|311964|fgenesh1_pm.C_scaffold_1000744
Length=3045
Score = 1927 bits (1043), Expect = 0.0
Identities = 1168/1229 (95%), Gaps = 6/1229 (0%)
Strand=Plus/Plus
Query 255 AATCTTTATCTTTCTTCTCTTCCATGAAAAGCCGGGGAATTTGGGCTGACGAGTATACTT 314
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1820 AATCTTTATCTTTCTTCTCTTCCATGAAAAGCCGCGGAATTTGGGCTGACGAGTATACTT 1879
Query 315 ACGCGCCTTTGCTCAAATCCTGTTCGTCTCTTTCTGATTTGCGATTTGGGAAATGCGTTC 374
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 1880 ACGCGCCTTTGCTCAAATCCTGTTCGTCCCTTTCTGATTTGCGGTTTGGGAAATGTGTTC 1939
Query 375 ATGGTGAGCTTATAAGAACTGGGTTCCACCGTCTTGGGAAAATTA-GGATTGGGGTGGTG 433
|||||||| |||| ||||||||||||||||| |||||||||| || ||||||||||||||
Sbjct 1940 ATGGTGAGGTTATTAGAACTGGGTTCCACCGGCTTGGGAAAA-TACGGATTGGGGTGGTG 1998
Query 434 GAGCTTTATACTTCCGGTGGGAGAATGGGTGATGCACAGAAAGTGTTCGACGAAATGTCT 493
||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 1999 GAGCTGTATACCTCCGGTGGGAGAATGGGGGATGCGCAGAAAGTGTTCGACGAAATGCCT 2058
Query 494 GAGAGAAACGTTGTCGTCTGGAATCTTATGATTCGCGGGTTCTGTGACTCCGGGGACGTT 553
|| ||||||||||||||||||||||||||| |||||||||||||||| || || ||||||
Sbjct 2059 GAAAGAAACGTTGTCGTCTGGAATCTTATGGTTCGCGGGTTCTGTGATTCTGGAGACGTT 2118
Query 554 GAAAGAGGTCTTCA-TTTGTTCAAACAGATGAGCGAAAGAAGCATTGTGTCGTGGAATTC 612
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2119 CAAAGAGGTCTT-AGTTTGTTCAAACAGATGAGCGAAAGAAGCATTGTGTCGTGGAATTC 2177
Query 613 GATGATATCTAGCTTGTCTAAATGTGGTAGAGATCGTGAGGCTTTGGAGCTTTTCTGCGA 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2178 GATGATATCTAGCTTGTCTAAATGTGGTAGAGATCGTGAGGCTTTGGAGCTTTTCTGCGA 2237
Query 673 AATGATTGATCAAGGTTTTGACCCTGATGAGGCGACTGTGGTTACAGTCTTGCCAATTTC 732
||||||||| |||||||| || || || ||||| |||||||||||| | |||||||| ||
Sbjct 2238 AATGATTGACCAAGGTTTCGATCCAGACGAGGCAACTGTGGTTACAATGTTGCCAATCTC 2297
Query 733 TGCATCTCTAGGAGTGTTGGATACCGGAAAATGGATTCATTCTACCGCAGAATCCAGTGG 792
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2298 TGCATCTCTCGGAGTTTTGGATACCGGAAAATGGATTCATTCTACCGCAGAATCCAGTGG 2357
Query 793 TTTGTTTAAAGATTTCATCACCGTGGGAAACGCTTTGGTAGATTTCTACTGCAAAAGCGG 852
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2358 TTTGATTAAAGATTTCATCACCGTGGGAAACGCTTTGGTAGATTTCTACTGCAAAAGCGG 2417
Query 853 CGACTTGGAGGCAGCAACGGCTATATTTAGAAAAATGCAGCGTAGAAACGTTGTTTCATG 912
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 2418 CGACTTGGAGGCAGCAACGGCTATATTTAGACAAATGCAGCGGAGAAACGTTGTTTCATG 2477
Query 913 GAACACATTGATATCGGGATCAGCCGTAAACGGAAAGGGAGAATTTGGGATAGACTTGTT 972
||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 2478 GAACACAATGATATCGGGATCAGCCGTGAACGGAAAGGGAGAATCTGGGATAGACTTGTT 2537
Query 973 TGATGCTATGATAGAGGAAGGGAAAGTAGCTCCAAATGAAGCGACATTTTTGGGGGTTTT 1032
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2538 TGATGCTATGATCGAGGAAGGGAAAGTAGCTCCAAATGAAGCGACATTTTTGGGGGTTTT 2597
Query 1033 GGCATGTTGCTCATACACAGGTCAGGTGGAGAGAGGAGAGGAATTGTTTGGTTTGATGAT 1092
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2598 GGCATGTTGCTCATACACAGGTCAGGTGGAGAGAGGAGAGGAATTGTTTGGTTTAATGAT 2657
Query 1093 GGAAAGATTCAAACTTGAGGCGAGAACCGAGCATTACGGTGCCATGGTAGATCTAATGAG 1152
||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||
Sbjct 2658 GGAAAGATTCAAACTTGAGCCGAGAACCGAGCATTACGGGGCAATGGTAGATCTAATGAG 2717
Query 1153 TAGAAGTGGGAGAATCACAGAGGCGTTTAAGTTTCTAAAAAATATGCCCGTAAACGCAAA 1212
||| |||||| |||||| |||||||||| ||||||| | |||||||||||| || |||||
Sbjct 2718 TAGGAGTGGGCGAATCAGAGAGGCGTTTGAGTTTCTCAGAAATATGCCCGTCAATGCAAA 2777
Query 1213 TGCGGCAATGTGGGGGTCGCTGCTCAGTGCTTGTCGTAGCCACGGAGATGTAAAGCTAGC 1272
||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||
Sbjct 2778 TGCGGCAATGTGGGGGTCGCTACTCAGTGCTTGTCGCAGCCACGGAGCTGTAAAGCTAGC 2837
Query 1273 AGAAGTTGCAGCAATGGAGTTAGTGAAGATTGAGCCAGGGAATTCGGGGAATTATGTGTT 1332
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2838 AGAAGTTGCAGCAATGGAGTTAGTGAAGATTGAGCCAGGGAATTCTGGGAATTATGTGTT 2897
Query 1333 GTTATCTAATTTGTATGCAGAGGAAGGGAGATGGCAAGATGTGGAGAAGGTACGAACGTT 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2898 GTTATCTAATTTGTATGCAGAGGAAGGGAGATGGCAAGATGTGGAGAAGGTACGAACGTT 2957
Query 1393 GATGAAAAAGAACCGCCTTAGAAAGTCTACTGGCCAAAGCACCATTTGCGATGTTTC-AG 1451
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 2958 GATGAAAAAGAATCGCCTTAGAAAGACTACTGGCCAAAGCACCATTTGCGATGTTTCCAG 3017
Query 1452 TCTGAGAAGTAGCTGGTTTTTGTCAATAG 1480
|||||||||||||||||||| || |||||
Sbjct 3018 TCTGAGAAGTAGCTGGTTTT-GTGAATAG 3045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59915955385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5