BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09200.1
Length=607
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471009 jgi|Araly1|471009|fgenesh2_kg.1__963__AT1G09200.1 645 0.0
Ahg924337 jgi|Araly1|924337|scaffold_105618.1 540 5e-153
Ahg940507 jgi|Araly1|940507|scaffold_601051.1 435 2e-121
Ahg487869 jgi|Araly1|487869|fgenesh2_kg.6__1003__AT5G10400.1 370 7e-102
Ahg484525 jgi|Araly1|484525|fgenesh2_kg.5__517__AT3G27360.1 309 1e-83
> Ahg471009 jgi|Araly1|471009|fgenesh2_kg.1__963__AT1G09200.1
Length=464
Score = 645 bits (349), Expect = 0.0
Identities = 405/432 (94%), Gaps = 3/432 (1%)
Strand=Plus/Plus
Query 65 TTC-ATGGCTCGTACCAAGCAGACGGCTAGGAAATCAACCGGAGG-AAAGGCTCCAAGGA 122
||| |||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||
Sbjct 34 TTCTATGGCTCGTACCAAGCAGACAGCTAGGAAATCAACCGGAGGCAAA-GCTCCAAGGA 92
Query 123 AGCAGCTGGCGACAAAAGCGGCGAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGC 182
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 93 AGCAATTGGCGACAAAAGCGGCGAGGAAATCTGCTCCAGCCACCGGAGGAGTGAAGAAAC 152
Query 183 CACACAGATTCAGACCCGGAACTGTTGCTTTAAGAGAAATCAGGAAGTACCAGAAGAGCA 242
| |||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 153 CTCACAGATTCAGACCCGGAACCGTAGCTCTAAGAGAAATCAGGAAGTACCAGAAGAGCA 212
Query 243 CTGAGCTTCTTATCCGTAAACTCCCTTTCCAGAGGCTTGTCAGAGAGATCGCTCAGGACT 302
|||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 213 CTGAGCTTCTGATCCGTAAACTTCCTTTCCAGAGGCTTGTGAGAGAGATCGCTCAGGATT 272
Query 303 TCAAAACCGATCTTCGTTTCCAGAGCAGTGCCGTCGCCGCTCTTCAGGAAGCTGCTGAAG 362
|||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 273 TCAAGACCGATCTCCGTTTCCAGAGCAGTGCCGTCGCCGCCCTCCAGGAAGCTGCTGAAG 332
Query 363 CTTACCTCGTCGGACTCTTCGAAGACACCAATCTCTGCGCCATTCACGCCAAGAGGGTCA 422
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 333 CATACCTCGTCGGACTCTTCGAAGACACCAATCTCTGCGCTATTCATGCCAAGAGAGTCA 392
Query 423 CGATCATGCCCAAGGACATCCAGCTCGCGAGAAGAATCAGAGGAGAACGAGCTTAGATCT 482
| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 393 CAATCATGCCCAAGGACATCCAGCTCGCAAGAAGAATCAGAGGAGAAAGAGCTTAGATCT 452
Query 483 AAGTATTCTGGT 494
||||||||||||
Sbjct 453 AAGTATTCTGGT 464
> Ahg924337 jgi|Araly1|924337|scaffold_105618.1
Length=451
Score = 540 bits (292), Expect = 5e-153
Identities = 383/428 (89%), Gaps = 2/428 (0%)
Strand=Plus/Plus
Query 68 ATGGCTCGTACCAAGCAGACGGCTAGGAAATCAACCGGAGG-AAAGGCTCCAAGGAAGCA 126
|||||||||||||||||||| |||||||||||||| ||||| ||| || |||||||||||
Sbjct 21 ATGGCTCGTACCAAGCAGACAGCTAGGAAATCAACAGGAGGCAAA-GCACCAAGGAAGCA 79
Query 127 GCTGGCGACAAAAGCGGCGAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCACA 186
| || |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 80 ATTAGCAACAAAAGCAGCGAGGAAATCTGCTCCAGCCACCGGAGGAGTGAAGAAGCCTCA 139
Query 187 CAGATTCAGACCCGGAACTGTTGCTTTAAGAGAAATCAGGAAGTACCAGAAGAGCACTGA 246
|||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 140 CAGATTCAGACCTGGAACCGTGGCTTTAAGAGAAATCAGGAAGTATCAGAAGAGCACTGA 199
Query 247 GCTTCTTATCCGTAAACTCCCTTTCCAGAGGCTTGTCAGAGAGATCGCTCAGGACTTCAA 306
|||||| ||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 200 GCTTCTGATCCGTAAACTTCCTTTCCAGAGGCTTGTGAGAGAGATTGCTCAAGACTTCAA 259
Query 307 AACCGATCTTCGTTTCCAGAGCAGTGCCGTCGCCGCTCTTCAGGAAGCTGCTGAAGCTTA 366
|| ||||| ||||||||||| ||||| || || ||||||||||||||||||||||||||
Sbjct 260 GACTGATCTCCGTTTCCAGAGTAGTGCTGTTGCTGCTCTTCAGGAAGCTGCTGAAGCTTA 319
Query 367 CCTCGTCGGACTCTTCGAAGACACCAATCTCTGCGCCATTCACGCCAAGAGGGTCACGAT 426
||| || |||||||| |||||||| ||||| || || ||||| || ||||| || || ||
Sbjct 320 CCTTGTTGGACTCTTTGAAGACACTAATCTTTGTGCTATTCATGCTAAGAGAGTTACTAT 379
Query 427 CATGCCCAAGGACATCCAGCTCGCGAGAAGAATCAGAGGAGAACGAGCTTAGATCTAAGT 486
|||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||| |
Sbjct 380 CATGCCTAAGGATATCCAGCTCGCGAGAAGAATTAGAGGAGAAAGAGCTTAGATCTAAAT 439
Query 487 ATTCTGGT 494
||||||||
Sbjct 440 ATTCTGGT 447
> Ahg940507 jgi|Araly1|940507|scaffold_601051.1
Length=452
Score = 435 bits (235), Expect = 2e-121
Identities = 354/412 (86%), Gaps = 6/412 (1%)
Strand=Plus/Plus
Query 68 ATGGCTCGTACCAAGCAGACGGCTAGGAAATCAACCGGAGG-AAAGGCTCCAAGGAAGCA 126
||||||||||||||||| || ||||||||||| |||||||| ||| || || ||||||||
Sbjct 21 ATGGCTCGTACCAAGCAAACCGCTAGGAAATCCACCGGAGGCAAA-GCACCGAGGAAGCA 79
Query 127 GCTGGCGACAAAAGCGGCGAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCACA 186
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 80 GCTGGCAACAAAGGCGGCGAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCGCA 139
Query 187 CAGATTCAGACCCGGAACTGTTGCTTTAAGAGAAATCAGGAAGTACCAGAAGAGCACTGA 246
|||||| | || ||||||||||| || ||||| ||||||||||||||||||||||| ||
Sbjct 140 TAGATTCCGTCCAGGAACTGTTGCCTTGAGAGAGATCAGGAAGTACCAGAAGAGCACAGA 199
Query 247 GCTTCTTATCCGTAAACTCCCTTTCCAGAGGCTTGT-CAGAGAGATCGCTCAGGACTTCA 305
|||||| |||||||| || ||||||||| | || || | | ||||| |||||||| ||||
Sbjct 200 GCTTCTGATCCGTAAGCTTCCTTTCCAGCGTCTGGTTC-GTGAGATTGCTCAGGATTTCA 258
Query 306 AAACCGATCTTCGTTTCCAGAGCAGTGCCGTCGCCGCTCTT-CAGGAAGCTGCTGAAGCT 364
| || ||||| | |||||||||||||||||||| ||| || || || || ||||| |||
Sbjct 259 AGACGGATCTGAGGTTCCAGAGCAGTGCCGTCGCAGCT-TTACAAGAGGCGGCTGAGGCT 317
Query 365 TACCTCGTCGGACTCTTCGAAGACACCAATCTCTGCGCCATTCACGCCAAGAGGGTCACG 424
||||| || || | || |||||||| || || ||||| ||||||||||||||||||||
Sbjct 318 TACCTTGTTGGTTTGTTTGAAGACACTAACCTTTGCGCGATTCACGCCAAGAGGGTCACT 377
Query 425 ATCATGCCCAAGGACATCCAGCTCGCGAGAAGAATCAGAGGAGAACGAGCTT 476
|||||||| ||||| ||||||||||| || || |||||||||||| ||||||
Sbjct 378 ATCATGCCTAAGGATATCCAGCTCGCAAGGAGGATCAGAGGAGAAAGAGCTT 429
> Ahg487869 jgi|Araly1|487869|fgenesh2_kg.6__1003__AT5G10400.1
Length=523
Score = 370 bits (200), Expect = 7e-102
Identities = 337/404 (83%), Gaps = 6/404 (1%)
Strand=Plus/Plus
Query 68 ATGGCTCGTACCAAGCAGACGGCTAGGAAATCAACCGGAGGAAAGGCTCCAAGGAAGCAG 127
||||||||||||||||| || ||| | ||||| ||||||||||||||||||||||||||
Sbjct 4 ATGGCTCGTACCAAGCAAACAGCTCGCAAATCCACCGGAGGAAAGGCTCCAAGGAAGCAA 63
Query 128 CTGGCGACAAAAGCGGCGAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCACAC 187
|| ||||| ||||| ||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 64 CTCGCGACTAAAGCAGCGAGGAAATCAGCTCCAGCAACCGGAGGAGTGAAGAAGCCACAC 123
Query 188 AGATTCAGACCCGGAACTGTTGCTTTAAGAGAAATCAGGAAGTACCAGAAGAGCACTGAG 247
|||||| | || |||||||| || || ||||||||||||||||| || ||||| ||||||
Sbjct 124 AGATTCCGTCCAGGAACTGTGGCGTTGAGAGAAATCAGGAAGTATCAAAAGAGTACTGAG 183
Query 248 CTTCTT-ATCCGTAAACTCCCTTTCCAGAGGCTTG-T-CAGAGAGATCGCTCAGGACTTC 304
||| || |||||||| || || |||||||| ||| | | | ||||| ||||| || |||
Sbjct 184 CTT-TTGATCCGTAAGCTTCCGTTCCAGAGA-TTGGTTC-GTGAGATTGCTCAAGATTTC 240
Query 305 AAAACCGATCTTCGTTTCCAGAGCAGTGCCGTCGCCGCTCTTCAGGAAGCTGCTGAAGCT 364
|| || ||||| | |||||||||||||| || || |||||||||||||| ||||| |||
Sbjct 241 AAGACGGATCTGAGGTTCCAGAGCAGTGCTGTGGCGGCTCTTCAGGAAGCAGCTGAGGCT 300
Query 365 TACCTCGTCGGACTCTTCGAAGACACCAATCTCTGCGCCATTCACGCCAAGAGGGTCACG 424
|| || || || || || || || || ||||| || || ||||| || ||||| || ||
Sbjct 301 TATCTTGTTGGGCTTTTTGAGGATACTAATCTTTGTGCGATTCATGCTAAGAGAGTAACC 360
Query 425 ATCATGCCCAAGGACATCCAGCTCGCGAGAAGAATCAGAGGAGA 468
|||||||| |||||||| ||||| ||||| || |||||||||||
Sbjct 361 ATCATGCCTAAGGACATTCAGCTTGCGAGGAGGATCAGAGGAGA 404
> Ahg484525 jgi|Araly1|484525|fgenesh2_kg.5__517__AT3G27360.1
Length=605
Score = 309 bits (167), Expect = 1e-83
Identities = 337/419 (80%), Gaps = 11/419 (3%)
Strand=Plus/Plus
Query 68 ATGGCTCGTACCAAGCAGACGGCTAGGAAATCAACCGGAGGAAAGGCTCCAAGGAAGCAG 127
|||||| | || ||||| || || || ||||| ||||||||||| || |||||||||||
Sbjct 52 ATGGCTAGAACAAAGCAAACAGCCAGAAAATCCACCGGAGGAAAAGCACCAAGGAAGCAA 111
Query 128 CTGGCGACAAAAGCGGCGAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCACAC 187
|| ||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||||
Sbjct 112 CTCGCGACGAAAGCAGCAAGAAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACAC 171
Query 188 AGATTCAGACCCGGAACTGTTGCTTTAAGAGAAATCAGGAAGTACCAGAAGAGCACTGAG 247
|||||| | || ||||| || || |||||||||||||||||||| || || |||||||||
Sbjct 172 AGATTCCGTCCAGGAACAGTAGCGTTAAGAGAAATCAGGAAGTATCAAAAAAGCACTGAG 231
Query 248 CTTCTT-ATCCGTAAACTCCCTTTCCAGAGGCTTG-T-CAGAGAGATCGCTCAGGACTTC 304
||| || |||||||| || || |||||||| ||| | | | ||||| ||||| || |||
Sbjct 232 CTT-TTGATCCGTAAGCTTCCGTTCCAGAGA-TTGGTTC-GTGAGATTGCTCAAGATTTC 288
Query 305 AAAACCGATCTTCG-TTTCCAGAGCAGTGCCGTCGCCGCTCTTCAGGAAGCTGCTGAAGC 363
|| || ||||| | |||| |||| ||||| ||||| |||||||| ||||| ||||||||
Sbjct 289 AAGACGGATCTGAGGTTTC-AGAGTAGTGCAGTCGCAGCTCTTCAAGAAGCAGCTGAAGC 347
Query 364 TTACCTCGTCGGACTCTTCGAAGACACCAATCTCTGCGCCATTCACGCCAAGAGGGTCAC 423
|| | || || | || ||||| || ||||| || || ||||| || |||||||| ||
Sbjct 348 CTATTTGGTTGGTTTGTTTGAAGATACTAATCTTTGTGCTATTCATGCTAAGAGGGTTAC 407
Query 424 GATCATGCCCAAGGACATCCAGCTCGCGAGAAGAATCAGAGGAGA-ACGAGCTTA-GAT 480
||| ||||| ||||| || || || ||||| || || ||||| || | ||||||| |||
Sbjct 408 GATTATGCCTAAGGATATTCAACTTGCGAGGAGGATTAGAGGTGAGA-GAGCTTAAGAT 465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22187537694
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5