BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09220.1
Length=1675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471011 jgi|Araly1|471011|fgenesh2_kg.1__965__AT1G09220.1 1672 0.0
Ahg475343 jgi|Araly1|475343|fgenesh2_kg.2__473__AT1G59720.1 54.7 2e-06
> Ahg471011 jgi|Araly1|471011|fgenesh2_kg.1__965__AT1G09220.1
Length=1133
Score = 1672 bits (905), Expect = 0.0
Identities = 1078/1157 (93%), Gaps = 29/1157 (3%)
Strand=Plus/Plus
Query 499 ATGTATCTTGTTGGTGGAAACATGATTGATGCTCACAAAGTGTTTGATGAAATGCCTGAG 558
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGTATCTTGTTGGTGGAAACATGATTGATGCTTACAAAGTGTTTGATGAAATGCCTGAG 60
Query 559 AGAAATCCGGTAACTTGGAATGTGATGATCACTGGCCTTACTAATTTGGGAGATTTCGAA 618
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 61 AGAAATCCGGTAACATGGAATGTGATGATCACTGGCCTGACTAATTTGGGAGATTTTGAA 120
Query 619 AAAGCTCTTTGCTTTTTGGAGAAGATGCCGAATCGGACGGTAGTGTCTTGGACCACTATC 678
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 AAAGCTCTTTGCTTTTTGGAGAAGATGCTGAATCGGACGGTAGTGTCTTGGACCACTATC 180
Query 679 ATTGATGGGTATGCACGAG-TAGATAAACCCAAGGAAGCTATAC-TCTTGTTTTCAAGAA 736
||||||||||||||||||| || |||||||||||||||||| || || ||||||||||||
Sbjct 181 ATTGATGGGTATGCACGAGTTA-ATAAACCCAAGGAAGCTACACTTC-TGTTTTCAAGAA 238
Query 737 TGGTTGCTTGCGACGCAATAAAGCCCAACGAGATAACCATTCTCGCCATTCTCCCAGCTG 796
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 TGGTTGCTTGCGATGCAATAAAGCCGAACGAGATAACCATTCTCGCCATTCTCCCAGCTG 298
Query 797 TTTGGAACTTGGGAGACTTAAAGATGTGCGGATCAGTTCATGCTTATGTTGGGAAAAGAG 856
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTTGGAACTTGGGAGACCTAAAGATGTGCGGATCAGTTCATGCTTATGTTGGGAAAAGAG 358
Query 857 GGTTTGTTCCATGTGATATCCGTGTGACTAACTCTCTCATCGACGCTTATGCAAAATGTG 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGTTTGTTCCATGTGATATCCGTGTGACTAACTCTCTCATCGACGCTTATGCAAAATGTG 418
Query 917 GGTGTATTCAAAGCGCGTTCAAGTTTTTCATAGAGATTCCAAACGGAAGGAAGAATCTTG 976
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 GGTGTATTCAAAGCGCGTTCAAGTTTTTCATCGAGATTCCAAACGGAAGGAAGAATCTTG 478
Query 977 TATCGTGGACAACGATGATCTCGGCGTTTGCAATTCACGGAATGGGAAAAGAAGCGGTCA 1036
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 479 TATCGTGGACAACGATGATCTCAGCGTTTGCAATGCACGGAATGGGCAAAGAAGCGGTCA 538
Query 1037 GTATGTTTAAAGACATGGAAAGATTAGGATTGAAGCCGAACAGAGTGACCATGATCAGTG 1096
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 539 ATATGTTCAAAGACATGGAAAGATTAGGATTGAAGCCCAACAGAGTGACCATGATCAGTG 598
Query 1097 TTTTGAACGCTTGCAGCCATGGAGGTTTAGCAGAAGAAGAGTTTCTAGAGTTTTTCAACA 1156
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 599 TTTTGAACGCTTGTAGCCATGGAGGTTTAGCAGAAGAAGAGTTTCTAAAGTTTTTCAACA 658
Query 1157 CGATGGTAAACGAGTACAAGATCACGCCGGATGTGAAGCACTATGGATGTCTAGTAGATA 1216
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 659 AGATGGTAAACAAGTACAAGATCACACCGGATGTGAAGCACTATGGATGTCTAGTAGATA 718
Query 1217 TGTTGagaagaaaaggaagattagaagaagcagagaagattgctttggagattccaatag 1276
|| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 719 TGCTGAGAAGAAAAGGAAGACTAGAAGAAGCAGAGAAAATTGCTTTGGAGATTCCAATAG 778
Query 1277 aagaaaaagCTGTGGTTTGGAGAATGCTGCTTGGAGCTTGTAGCGTTTATGATGATGCTG 1336
| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATCAAAAGGCGGTGGTTTGGAGAATGCTGCTTGGAGCTTGTAGCGTTTATGATGATGCTG 838
Query 1337 AATTGGCTGAGAGGGTTACTAGAAAGCTAATGGAGCTAGAGAGAAGCCATGGAGGAGACT 1396
|| ||||||||||||||||||| ||||||| ||| | |||||| | |||||||||||||
Sbjct 839 AAATGGCTGAGAGGGTTACTAGGAAGCTAACGGAATTGGAGAGATGGCATGGAGGAGACT 898
Query 1397 ATGTGCTTATGTCCAACATCTTTTGTGGTACTGGAAGATTTTTAGATGCGCAGAGATTTC 1456
|||||||||||||||||||||| ||||||| ||||||||||| |||||| ||||||||||
Sbjct 899 ATGTGCTTATGTCCAACATCTTCTGTGGTAATGGAAGATTTTCAGATGCCCAGAGATTTC 958
Query 1457 GGAAACAGATGGATGTTAGAGGAGTAGCTAAACTTCCAGGACATTCACAAGTAACATAGC 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GGAAACAGATGGATGTTAGAGGAGTAGCTAAACTTCCAGGACATTCACAAGTAACATAGC 1018
Query 1517 GGAGCATGTATATATTTATGACTCCAATCTTTATTGTTTTGATGATAAACTTC-AGAATT 1575
| | | | | |||||| | ||||||||| ||||||| | | || |
Sbjct 1019 --A-C-T--------------C-C-AATCTTCAATGTTTTGATCATAAACTCCCA-AAGT 1057
Query 1576 TTTGGGAGCTCTGTTCTGATCCTCAATGTTTTGATCATAAACTCCCAAAAGGTGTTTT-- 1633
||||||||||||||||||||| ||||||||||||||||||||||||||| | | ||||
Sbjct 1058 TTTGGGAGCTCTGTTCTGATCTTCAATGTTTTGATCATAAACTCCCAAA-GTTTTTTTTT 1116
Query 1634 CTATTCTGAATGGTTTT 1650
|| |||||||||| |||
Sbjct 1117 CTGTTCTGAATGGGTTT 1133
> Ahg475343 jgi|Araly1|475343|fgenesh2_kg.2__473__AT1G59720.1
Length=1972
Score = 54.7 bits (29), Expect = 2e-06
Identities = 46/54 (85%), Gaps = 2/54 (4%)
Strand=Plus/Plus
Query 535 AAAGTGTTTGATGAAATGCCTGAGAGAAATCCGGTAACTTGGAATGT-GATGAT 587
|||||||||||||||||||||||||||| || || | |||||| | ||||||
Sbjct 599 AAAGTGTTTGATGAAATGCCTGAGAGAAGTCTTGTTTCGTGGAAT-TCGATGAT 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62810814005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5