BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09230.1
Length=1507
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471012 jgi|Araly1|471012|fgenesh2_kg.1__966__AT1G09230.1 2252 0.0
> Ahg471012 jgi|Araly1|471012|fgenesh2_kg.1__966__AT1G09230.1
Length=1483
Score = 2252 bits (1219), Expect = 0.0
Identities = 1416/1505 (94%), Gaps = 37/1505 (2%)
Strand=Plus/Plus
Query 4 TCAATTTTATTGAAAAGAACATGTCATCGTTCTGAGTTTGGGTTTTCGAGCTCTAATAAT 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1 TCAATTTTATTGAAAAGAACCTGTCATCGTTCTGAGTTTGGGTTTTCGAGCTC---TAAT 57
Query 64 GGCTGCACATGCGACATCGGAGCCGGCCGTGAATCTCCCGGCGACGCAATTTGAATCTCA 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GGCTGCACATGCGACATCGGAGCCGGCCGTGAATCTCCCGGCGACGCAATTTGAATCTCA 117
Query 124 GGTTACAGAGCCGTTCGGGGTAACTCT-TCTAGTTCGGCATCTTCCTGATGGAATTCCTC 182
|||||||||||| || ||||||||||| | | ||||| ||||||||||||||||||||||
Sbjct 118 GGTTACAGAGCCTTTTGGGGTAACTCTAT-TGGTTCGACATCTTCCTGATGGAATTCCTC 176
Query 183 ATGATATCGTCTCTCGGCTCTTTTCTCAGTACGGAGCTTCTGCTGTTCGTCCTTGCTCCG 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 ATGATATCGTCTCTCGGCTCTTTTCTCAGTACGGAGCTTCTGCTGTTCGTCCTTGCTCCG 236
Query 243 GTGGAAAATTGAGAAACGCTGCTTTTGTGGATTTCAAGAATGAAGCTTTTGCTTCTCAAG 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GTGGAAAATTGAGAAACGCTGCTTTTGTGGATTTCAAGAATGAAGCTTTTGCTTCTCAAG 296
Query 303 CACATCGTCAATTAAATGGGCTGAGGTTTCTTGGCAAGGTTCTACAAGTACAGAGAGCCA 362
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 297 CACATCGTCAATTAAACGGGCTGAGATTTCTTGGCAAGGTTCTACAAGTACAGAGAGCCA 356
Query 363 ATAAACCTAATGACAACAAGAAGTCTCGACAAATCGAAGAATCTGTGACCAAGGGGAATG 422
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ATAAACCTAACGAGAACAAGAAGTCTCGACAAATCGAAGAATCTGTGACCAAGGGGAATC 416
Query 423 CTTTCTCTACTGTTAGCACCAACAATGATTCAAAATCTGGGCAGATTCTTTCTGGCGAAC 482
|||||||||| |||||||||| ||||||| || |||||||||||| |||||||||||||
Sbjct 417 CTTTCTCTACAGTTAGCACCACCAATGATACATTATCTGGGCAGATGCTTTCTGGCGAAC 476
Query 483 CGATAGCTCCAAAACTCGGCAT-AGACTATCCATTTCCTCCTCACCTGCAATATGCTTAC 541
| |||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||
Sbjct 477 CTATAGCTCCAAAACTCGGCATTA-ACTATCCATTTCCTCCTCATCTGCAATATGCTTAC 535
Query 542 CCACCACCCGATGCAAATATATTAGCCAACATTACTAATGCCCTTATCGCTGTCCCACCG 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CCACCACCCGATGCAAATATATTAGCCAACATTACTAATGCCCTTATCGCTGTCCCACCA 595
Query 602 TTATACACCCAGGTGCTGCATCTGATGAACAAAATGAATCTTCCACCTCCTTTTCGCCTG 661
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 596 TTATACACCCAGGTGCTACATCTGATGAACAAAATGAACCTTCCACCTCCTTTTCGCCTG 655
Query 662 GCCCTGCCCACACCACCTCTACCTAAAGCAGGCCCCCAACAAACTGACTTGGAGCATCAA 721
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 656 GCCCTGCCCACACCACCTCTACCTAAAGCAGGCCCCCAACCAACTGAGTTGGAGCATCAA 715
Query 722 TCTAGTAGCGAGTCAGAGATGGAATCTGATGAGGATATAGGTACGTCAAAATCAGGAAGG 781
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 716 TCTAGTAGCGAGTCAGAGATGGAATCTGATGAGGATACAGGTACATCAAAATCAGGAAGG 775
Query 782 AAGCGTGCTAGACATGGATTTCTTGTTGGTCTTGGTATGGACAAGGATGTGCCACATGAG 841
||||||||||| |||| | ||||||||||| |||||||||||| || | ||
Sbjct 776 AAGCGTGCTAGGCATGAAACTCTTGTTGGTCCTGGTATGGACAA---TG----A---GA- 824
Query 842 ACTGTTGGAGTGAAACCTTCGTCTTTGACCCCAAAAGAGATCCCTCGAATAAGAAAGAAT 901
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 -CTGTTGGAGTGAAACCTTCGTCTTTGACCCCAAAAGAGATCCCTCGAATAAGAAAGAAT 883
Query 902 AAACACGTTATGCAGATCAAGATCA-CCTCTAAAGTTACTCAAGACGAATATAAAGAGGA 960
||||||||||||||||||||||| | || | |||| | ||||||||||||||||||||||
Sbjct 884 AAACACGTTATGCAGATCAAGATTATCC-CAAAAGCTCCTCAAGACGAATATAAAGAGGA 942
Query 961 AAGTGAGAATGAAGACCCTGCAGACGAGCCCAAAGAAAAAGATTCAAATTTGAAACCCTT 1020
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 943 AAGTGAGAATGAAGACCCTGCAGACGAGCCCAAAGAAGAAGATTCAAATTTGAAACCCTT 1002
Query 1021 TGCAAGTTTAGAGGAATTGGAGAAAGGAAGGTTACCTCCACAGGATATTCTTTCACTCCC 1080
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TGCGAGTTTAGAGGAGTTGGAGAAAGGAAGGTTACCTCCACAGGATATTCTTTCACTCCC 1062
Query 1081 TATGTTCAAGAACTACACAGCTGGGAATCCGTCGGTTGTACTGTATATCAAAAACCTTGC 1140
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1063 TATGTTCAAGAACTACACAGCTGGGAATCCGTCGCTTGTGCTGTATATCAAAAACCTTGC 1122
Query 1141 CAAAGATGTTGTTATCGATGATTTCTATTACATATTTGGGTCACAGTTTGAAAGCAG-CG 1199
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1123 CAAAGATGTTGTTATTGATGATTTCTATTACATATTTGGGTCACAGTTTGAAAGC-GTCG 1181
Query 1200 AAG-TAGCTAAATCAAGTCTTGGTGTGAGGCTAATGCAGGAAGGAAGGATGAGAGGGCAA 1258
||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 AAGCT-GCTAAATCAATTCTTGGTGTGAGGCTAATGCAGGAAGGAAGGATGAGAGGGCAA 1240
Query 1259 GCTTTTTTGACATTTCCGTCTGTTGAAGTCGCACATCGTGCTCTGAATCTTGTAAATGGT 1318
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 GCCTTTTTGACATTTCCATCTGTTGAAGTCGCACATCGTGCTCTGAATCTTGTAAATGGT 1300
Query 1319 TTTGTGTTCAAAGGCAAACCAATGATAATCCAGTTTGGCAGGACTCCTGGAGCAGCCAAG 1378
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1301 TTTGTGTTCAAAGGAAAACCAATGATAATCCAGTTTGGCAGGAATCCTGGAGCAGCCAAG 1360
Query 1379 CCAAACGAATGATGATGATATATATAACATCA-ACGGTTTTTGAAGAGTAGGTGCAAATT 1437
|||||||||||||||||||||||||||||| | | ||||||||| || || ||||||||
Sbjct 1361 CCAAACGAATGATGATGATATATATAACATTAGA-GGTTTTTGAGGATTATCTGCAAATT 1419
Query 1438 CTTTTTGTGTATCATCAT-------GT--AACTCTTTGACTCTCAGTTTAAAGTCAATAA 1488
|||||||||||||||||| || ||||||| ||||| ||| |||||||||||||
Sbjct 1420 CTTTTTGTGTATCATCATCATCATTGTGTAACTCTT-GACTCGCAGATTAAAGTCAATAA 1478
Query 1489 AATAT 1493
|||||
Sbjct 1479 AATAT 1483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56411652845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5