BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09245.1
Length=455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919679 jgi|Araly1|919679|scaffold_100960.1 438 1e-122
Ahg919677 jgi|Araly1|919677|scaffold_100958.1 381 2e-105
Ahg315683 jgi|Araly1|315683|fgenesh1_pm.C_scaffold_2000716 318 2e-86
> Ahg919679 jgi|Araly1|919679|scaffold_100960.1
Length=598
Score = 438 bits (237), Expect = 1e-122
Identities = 401/474 (85%), Gaps = 35/474 (7%)
Strand=Plus/Plus
Query 1 AAACTGGAGTCTCAAATTACTC-----TTA-AATGAATCGTTTTATAATTTTTATGTTTG 54
|||||||||| ||| ||||||| || ||||||||||||||||| |||||||| ||
Sbjct 105 AAACTGGAGT-TCATATTACTCGAAAAATATAATGAATCGTTTTATAA-TTTTATGTGTG 162
Query 55 TTGTTGTAACATATTTTGGATTGAATGTAGCA---TTTGACATGTTCCCATGTCCAAAAA 111
| |||| || | ||| |||||||||||||| ||||||||||| |||||||| ||||
Sbjct 163 TCGTTGCGACGTGTTTAAGATTGAATGTAGCATTTTTTGACATGTTTCCATGTCCGAAAA 222
Query 112 ATAAAGTTCTAATTA-GAAACGAGCTTGGTCCCGGTTTAGTTCTTCAATACCATTGTCAT 170
| ||| || | |||| | |||||||||||| ||||||| |||||||||||||||||||||
Sbjct 223 ACAAAATTTTCATTACG-AACGAGCTTGGTTCCGGTTTGGTTCTTCAATACCATTGTCAT 281
Query 171 TCAAGAGATC-ACAATCTAGACGTCGCAAATTTACAATTCAATGAATATAAA-GAAATCG 228
|||||||| | ||||| ||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 282 TCAAGAGA-CAACAATTTAGACGTCGCAAATTTACAATTCAACGAAT-CAAAGGAAATCG 339
Query 229 CATTCGGAGACAAGTTAGGAAAAAGAACAAGATGGAGTTG-CATTTTGAAACACGGCTTA 287
||||| |||||||||||||| ||| |||||||||| ||| | |||||||||||||||||
Sbjct 340 TATTCGCAGACAAGTTAGGAAGAAGGACAAGATGGACTTGTC-TTTTGAAACACGGCTTA 398
Query 288 TACATGCGATATTATTCAGAATTTATAGCATACATGA-TGGCCAACGTTCGTCGATGCGG 346
|||||||||||||||||||||||||||||||||| || |||| ||||||||||||| ||
Sbjct 399 TACATGCGATATTATTCAGAATTTATAGCATACA-GAATGGCTAACGTTCGTCGATATGG 457
Query 347 TGCT-ATCCGT-AATTGGATTGCTAGAAAAGATAGAATTTACCTTATAAGAAAT-GTAAA 403
|||| | |||| ||| ||||||| ||||||||| ||||||| ||||||||||| | |||
Sbjct 458 TGCTTA-CCGTGAAT-GGATTGCCAGAAAAGATGGAATTTATGTTATAAGAAATCG-AAA 514
Query 404 TCCGCCAGCAGTGTTCCGT--TATACATGGAATAAAACTAAGTAATGTTGATGA 455
||||||| || ||||| | |||||||| || ||||||||||||||||
Sbjct 515 TCCGCCACCAACGTTCCATCATATACATGT--TA----TAAGTAATGTTGATGA 562
> Ahg919677 jgi|Araly1|919677|scaffold_100958.1
Length=455
Score = 381 bits (206), Expect = 2e-105
Identities = 325/380 (86%), Gaps = 18/380 (5%)
Strand=Plus/Plus
Query 86 ATTTGACATGTTCCCATGTCC-AAAAAATAAAGTTCTAA-TTAGAAACGAGCTTGGTCCC 143
||||||||||||||||||||| | || ||| || || || | ||||||||||||||
Sbjct 14 ATTTGACATGTTCCCATGTCCGAGTAACGAAA-TTAGAATTTCG-AACGAGCTTGGTCCT 71
Query 144 GGTTTAGTTCTTCAATACCATTGTCATTCAAGAGATCACAATCTAGACGTCGC-AAATTT 202
||||| ||||| |||||||||||||||||||||||| ||||||||| ||| | ||||||
Sbjct 72 GGTTTGGTTCTCCAATACCATTGTCATTCAAGAGATAACAATCTAGGGGTC-CAAAATTT 130
Query 203 ACAATTCAATGAA-TATAAAGAAAT-CGCATTCGGAGACAAGTTAGGAAAAAGAACAAGA 260
||||||||| ||| || ||| |||| || ||||||||||||||||| | |||||||||
Sbjct 131 ACAATTCAAGGAACTA-AAACAAATCCG-TTTCGGAGACAAGTTAGGGAGAAGAACAAGG 188
Query 261 TGGAGTTG-CATTTTGAAACACGGCTTATACATGCGATATTATTCA-GAATTTATAGCAT 318
|||| ||| | |||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 189 TGGACTTGTC-TTTTGAAACACGGCTTATACATGCGATATTAT-CAAGAATTTATAGCGT 246
Query 319 ACATGA-TGGCCAACGTTCGTCGATGCGGTGCTATCCGTAATTGGATTGCTAGAAAAGAT 377
||| || ||| ||||||||||||||| |||||||| ||| ||||| |||| |||||||||
Sbjct 247 ACA-GAATGGGCAACGTTCGTCGATGTGGTGCTATACGTCATTGGTTTGCCAGAAAAGAT 305
Query 378 AGAATTTACCTTATAAGAAATGTAAATCCGCCAGCAGTGTTCCGTTATA--CATGGAATA 435
||||||||||||| |||||| | |||||||| || ||||| | ||| |||||||||
Sbjct 306 GGAATTTACCTTATGAGAAATATGCATCCGCCACCAACGTTCCATCATATGCATGGAATA 365
Query 436 AAACTAAGTAATGTTGATGA 455
||||||||||||||||||||
Sbjct 366 AAACTAAGTAATGTTGATGA 385
> Ahg315683 jgi|Araly1|315683|fgenesh1_pm.C_scaffold_2000716
Length=390
Score = 318 bits (172), Expect = 2e-86
Identities = 274/321 (85%), Gaps = 16/321 (5%)
Strand=Plus/Plus
Query 135 CTTGGTCCCGGTTTAGTTCTTCAATACCATTGTCATTCAAGAGATC-ACAATCTAGACG- 192
||||||||| |||| |||||||| |||||||||||||||||||| | |||||||| | |
Sbjct 77 CTTGGTCCCAGTTTGGTTCTTCAGTACCATTGTCATTCAAGAGA-CAACAATCTAAATGT 135
Query 193 -TCGCAAATTTACAATTCAATGAATATAAA-GAAATCGCA-TTCGGAGACAAGTTAGGAA 249
|| |||||||||||||||||||| | ||| | |||| | ||||||||||||||||| |
Sbjct 136 CTCCCAAATTTACAATTCAATGAA-ACAAAGGTAATC-AACTTCGGAGACAAGTTAGGGA 193
Query 250 AAAGAACAAGATGGAGTTG-CATTTTGAAACACGGCTTATACATGCGATATTATTCAGAA 308
||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 194 GAAGGACAAGATGGACTTGTC-TTTTGAAACACGGCTTATACATGCGATATTATTCAGAA 252
Query 309 TTTATAGCATACATGA-TGGCCAACGTTCGTCGATGCGGTGC-TATC-CGTAATTGGATT 365
||||||| |||| || ||| ||||||||||||||| ||| | || | ||| ||||||||
Sbjct 253 TTTATAGGATACC-GAATGGGCAACGTTCGTCGATGTGGT-CATA-CACGTCATTGGATT 309
Query 366 GCTAGAAAAGATAGAATTTACCTTATAAGAAATGTAAATCCGCCAGCAGTGTTCCGTTAT 425
|| ||||||||| ||||||| |||| ||||||| |||||||||| || |||||| | ||
Sbjct 310 GCCAGAAAAGATGGAATTTATCTTACAAGAAATCAAAATCCGCCACCACTGTTCCATCAT 369
Query 426 ACATGGAATAAAACTAAGTAA 446
||||||||||||||| |||
Sbjct 370 GGATGGAATAAAACTAATTAA 390
Score = 119 bits (64), Expect = 2e-26
Identities = 72/76 (95%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 27 ATGAATCGTTTTATAATTTTTATGTTTGTTGTTGTAACATATTTTGGATTGAATGTAGCA 86
|||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1 ATGAATCGTTTTCTAATTTTTATGTTTGTTGTTGCGACATGTTTTGGATTGAATGTAGCA 60
Query 87 TTTGACATGTTCCCAT 102
||||||||||||||||
Sbjct 61 TTTGACATGTTCCCAT 76
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16445058859
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5