BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09250.1
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471014 jgi|Araly1|471014|fgenesh2_kg.1__968__AT1G09250.1 1075 0.0
> Ahg471014 jgi|Araly1|471014|fgenesh2_kg.1__968__AT1G09250.1
Length=875
Score = 1075 bits (582), Expect = 0.0
Identities = 767/850 (90%), Gaps = 38/850 (4%)
Strand=Plus/Plus
Query 129 TTAATGGTGGAGTCTCTGTTCCCGAGCATCGAAAACACAGGTGAATCGTCT-C-GA---- 182
|||||||||||||||||||| |||||||| ||||||||| ||||||||||| | ||
Sbjct 46 TTAATGGTGGAGTCTCTGTTTCCGAGCATAGAAAACACAAGTGAATCGTCTCCGGAGTCG 105
Query 183 AGA---AAGAAGCCGAGGATATCAGAGACGGCGGAGGCGGAGATAGAGGCACGACGTG-T 238
||| ||||| ||||||||||| | || | | ||||||||||||||||||||| | |
Sbjct 106 AGACGGAAGAAACCGAGGATATC-G-GA-GAC---GGCGGAGATAGAGGCACGACG-GAT 158
Query 239 CAACGAAGAAAGCTTGAAGAGATGGAAAACGAATCGTGTGCAACAGATCTACGCTTGTAA 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 159 CAACGAAGAAAGCTTGAAGAGATGGAAAACGAATCGTGTGCAACAGATCTACGCTTCTAA 218
Query 299 GCTCGTCGAAGCTTTACGCCGAGTTCGTCAGAGATCTTCCACCACCAGCAACAACGAGAC 358
|||||||||||||||||| |||||||||||||| || ||||||| | | | |||||
Sbjct 219 GCTCGTCGAAGCTTTACGTCGAGTTCGTCAGAGGTCGTCCACCA---GTA-CG--GAGAC 272
Query 359 CGATAAACTCGTCTCCGGCGCGGCGAGGGAGATACGTGATACGGCGGATCGAGTTCTAGC 418
||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 273 CGATAAAGTCGTCTCCGGCGCGGCGAGAGAGATACGTGAGACGGCGGATCGAGTTCTGGC 332
Query 419 TGCGTCCGCTCGTGGTACGACTCGGTGGAGCAGAGCGATTTTAGCGAGTCGCGTCCGAGC 478
|||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 333 TGCGTCGGCTCGTGGCACGACTCGGTGGAGCAGAGCGATTTTATCGAGTCGCGTCCGAGC 392
Query 479 GAAGCTGAAGAAACATAGAAAGGCGAAAAAGTCAACGGGAAATTGTAAATCGAGAAAAGG 538
|||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 393 GAAGTTGAAGAAACATAGAAAGGCGAAGAAGTCAACCGGAAATTGTAAATCGAGAAAAGG 452
Query 539 TCTCACGGAGACGAATCGGATTAAGTTACCGGCGGTTGAGAGAAAACTGAAGATTCTTGG 598
| | |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 453 TGTGACGGAGGCGAATCGGATTAAGTTACCGGCGGTTGACAGAAAACTGAAGATTCTCGG 512
Query 599 CCGTTTGGTTCCTGGTTGCCGGAAAGTCTCTGTACCGAATCTTTTAGATGAAGCGACCGA 658
||| || ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 513 CCGGTTAGTTCCCGGTTGCCGGAAAGTCTCTGTACCTAATCTTTTAGATGAAGCGACCGA 572
Query 659 TTACATCGCAGCGTTAGAGATGCAGGTTCGAGCCATGGAGGCTCTCGCCGAACTTTTAAC 718
||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 573 TTACATCGCGGCGTTAGAGATGCAGGTTCGAGCCATGGAGGCTCTAGCAGAACTTTTAAC 632
Query 719 CGCAGCCGCACCACGGACGACGTTGACCGGAACTTAACGGCGGC---AGTTAGTTTGTCA 775
||| ||||||||||| ||||||||||| |||||||||||||||| |||||||||||||
Sbjct 633 CGCCGCCGCACCACGAACGACGTTGACGGGAACTTAACGGCGGCGGCAGTTAGTTTGTCA 692
Query 776 GTTGTTAATTAGcttttctttt-----acctttttacccctttattttggcttcaagtgt 830
||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||
Sbjct 693 GTTGTTAATTAGCTTTTGTTTTTTTTTACCTTTTTACCCCTTTATTTTGGCT-CAAGTGT 751
Query 831 tttttttttCTCGTCGACGCGATTTTAATTTATTAAATTCATGTATTTTATTTGTATACA 890
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 TTTTTTTTAATCGTCGCCGCGATTTTAATTTATTAAATTCATGTATTTTATTTGTATACA 811
Query 891 TCATCACTTCtttttttttgtatccattttgatctttctttgttttttCGTTAGATAATC 950
||| || |||| ||| ||| ||||||||||||||||||| |||| | ||||||||||
Sbjct 812 TCAG---TT-TTTTATTT-GTAGCCATTTTGATCTTTCTTTGGTTTTCC-TTAGATAATC 865
Query 951 AAAGTTATCT 960
||||||||||
Sbjct 866 AAAGTTATCT 875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36407385735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5