BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09270.1
Length=2143
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919681 jgi|Araly1|919681|scaffold_100962.1 2691 0.0
Ahg917300 jgi|Araly1|917300|Al_scaffold_0008_2051 139 8e-32
> Ahg919681 jgi|Araly1|919681|scaffold_100962.1
Length=1658
Score = 2691 bits (1457), Expect = 0.0
Identities = 1596/1663 (96%), Gaps = 9/1663 (1%)
Strand=Plus/Plus
Query 117 agaaagagaTTTTAACAAACGATGTCGCTGAGGCCGAGCACACGCGCGGAGCTAAGGAAG 176
||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGAGAGACGTTAACAAAGGATGTCGCTGAGGCCGAGCACACGCGCGGAGCTAAGGAAG 60
Query 177 AAGATATACAAGACAGGCGTCGATGCCGATGAGGCCAGGCGGAGGAGAGAGGACAATCTC 236
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 AAGATATACAAGACAGGGGTCGATGCCGATGAGGCGAGGCGGAGGAGAGAGGACAATCTC 120
Query 237 GTCGAGATTAGGAAAAACAAGCGTGAGGATAGTCTTCTCAAGAAGCGTCGTGAAGGAATG 296
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GTCGAGATTCGGAAAAACAAGCGTGAGGATAGTCTCCTCAAGAAGCGTCGTGAAGGAATG 180
Query 297 ATGCTTCAGCAGCAGCTGCCTCTCGGAGCTGGCCTTGATGGTCCCCAGACCGCTGCCGCC 356
|||||||||||||| ||||||||||||||||||||| |||| ||||| ||||||||||
Sbjct 181 ATGCTTCAGCAGCA---GCCTCTCGGAGCTGGCCTTGACGGTCTCCAGAACGCTGCCGCC 237
Query 357 GTTGAGAAACGATTAGAAGGTATCCCAATGATGGTACAAGGTGTTTATTCTGATGATCCT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GTTGAGAAACGATTAGAAGGTATCCCAATGATGGTACAAGGTGTTTATTCTGATGATCCT 297
Query 417 CAAGCTCAGCTAGAAGCGACTACCCAATTTAGAAAGTTGTTATCTATAGAGCGTAGTCCT 476
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 298 CAAGCTCAGCTAGAAGCCACTACTCAATTTAGAAAGTTGTTATCCATAGAGCGTAGTCCT 357
Query 477 CCAATTGATGAAGTGATCAAAGCTGGGGTTATCCCTCGATTTGTGGAGTTTCTTGGAAGG 536
|||||||| |||||||||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct 358 CCAATTGACGAAGTGATCACAGCTGGGGTTGTCCCACGATTTGTGGAGTTTCTTGGAAGG 417
Query 537 CATGACCATCCTCAATTGCAGTTTGAGGCTGCATGGGCTTTGACCAATGTTGCGTCAGGA 596
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 418 CAAGACCATCCCCAATTGCAGTTTGAGGCTGCGTGGGCTTTGACCAATGTTGCGTCAGGA 477
Query 597 ACATCAGATCATACTCGGGTTGTAATCGAACAGGGGGCGGTTCCTATCTTCGTTAAGCTT 656
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 478 ACATCAGATCATACTCGGGTTGTAATTGAACAGGGGGCGGTTCCTATCTTCGTTCAGCTT 537
Query 657 CTTA-CATCTGCTAGTGATGACGTTCGAGAGCAGGCGGTGTGGGCCTTGGGAAATGTTGC 715
|||| | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 538 CTTAGC-TCTGCAAGTGATGACGTTCGAGAGCAGGCTGTGTGGGCCTTGGGAAATGTTGC 596
Query 716 TGGGGACTCTCCAAACTGCAGGAATCTTGTTCTCAACTATGGGGCCCTTGAGCCATTGCT 775
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 597 TGGGGACTCTCCAAACTGCAGGAATCTTGTTCTCAACTATGGGGCTCTTGAGCCATTGCT 656
Query 776 GGCTCAGTTAAATGAAAATTCTAAGTTGTCCATGCTAAGAAATGCTACATGGACCTTGTC 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GGCTCAGTTAAATGAAAATTCTAAGTTGTCCATGCTAAGAAATGCTACATGGACCTTGTC 716
Query 836 CAACTTTTGTCGTGGTAAACCACCAACACCATTTGAACAGGTGAAGCCTGCGTTGCCAAT 895
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 717 CAACTTTTGCCGTGGTAAACCACCAACACCATTTGAACAGGTGAAGCCTGCGTTGCCAGT 776
Query 896 TCTTCGGCAGCTTATCTATCTGAATGATGAAGAGGTTCTCACTGATGCTTGCTGGGCTCT 955
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 777 TCTTCGGCAGCTTATCTATCTGAATGATGAAGAAGTTCTCACCGATGCCTGCTGGGCTCT 836
Query 956 CTCCTACCTTTCAGATGGCCCCAATGATAAGATTCAGGCTGTGATTGAGGCAGGTGTCTG 1015
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 837 CTCCTACCTTTCAGATGGCCCCAATGATAAGATTCAGGCTGTGATTCAGGCAGGTGTCTG 896
Query 1016 TCCACGACTTGTGGAGCTTTTGGGTCATCAATCACCTACGGTTCTCATTCCTGCTCTTCG 1075
||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||
Sbjct 897 TCCACGACTTGTGGAGCTTCTGGGTCATCAATCACCCACGGTTCTCATTCCTGCCCTTCG 956
Query 1076 AACTGTTGGGAACATCGTAACTGGTGATGACTCTCAGACACAGTTTATAATTGAGAGTGG 1135
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 957 AACTGTTGGGAACATCGTAACTGGTGATGATTCTCAGACACAGTTTATAATTGATAGTGG 1016
Query 1136 CGTACTACCACACCTTTATAATTTGCTGACGCAAAATCACAAGAAAAGTATaaaaaaaGA 1195
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1017 CGTACTTCCACACCTTTATAATTTGCTTACGCAAAATCACAAGAAAAGTATTAAAAAAGA 1076
Query 1196 AGCTTGTTGGACTATCTCGAATATTACTGCTGGGAATAAACTTCAGATAGAGGCTGTGGT 1255
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1077 AGCTTGTTGGACTATCTCGAATATTACTGCTGGGAATAAAGTTCAGATAGAGGCTGTGGT 1136
Query 1256 TGGCGCTGGAATAATCCTCCCTCTTGTGCACTTGCTCCAAAACGCGGAGTTCGATATAAA 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TGGCGCTGGAATAATCCTCCCTCTTGTGCACTTGCTCCAAAACGCGGAGTTCGATATAAA 1196
Query 1316 GAAGGAAGCTGCTTGGGCTATTTCCAATGCCACATCAGGAGGGTCACATGAGCAGATTCA 1375
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1197 GAAGGAAGCTGCTTGGGCTATTTCCAATGCCACCTCAGGAGGGTCTCATGAGCAGATTCA 1256
Query 1376 ATATTTGGTGACCCAAGGCTGCATCAAACCACTTTGTGATCTTCTAATCTGCCCTGATCC 1435
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1257 ATATTTGGTGACCCAAGGCTGTATCAAACCACTTTGTGATCTTCTAATCTGCCCTGATCC 1316
Query 1436 AAGGATCGTGACAGTGTGCCTCGAGGGTCTTGAAAACATTCTCAAGGTTGGTGAGGCTGA 1495
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1317 AAGGATTGTGACAGTGTGCCTCGAGGGGCTTGAAAACATTCTCAAGGTTGGTGAGGCTGA 1376
Query 1496 CAAGGAAATGGGATTAAACAGTGGGGTGAATCTCTATGCTCAAATAATAGAAGAATCTGA 1555
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 CAAGGAGATGGGATTAAACGGTGGGGTGAATCTCTATGCTCAAATAATAGAAGAATCTGA 1436
Query 1556 TGGGTTGGACAAAGTCGAAAACCTTCAATCCCATGATAACAACGAGATATATGAGAAGGC 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TGGGTTGGACAAAGTCGAAAACCTTCAATCCCATGATAACAACGAGATATATGAGAAGGC 1496
Query 1616 CGTTAAGATATTGGAGAGATATTGGGCTGAAGAAGAGGAAGAACAGATTCTGCAGGACGG 1675
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1497 CGTTAAGATATTGGAGAGATATTGGGCTGAAGAAGAGGAAGAGCAGATTCTGCAGGACGG 1556
Query 1676 CGGGAATGACAATTCACAACAGGCTTTCAATTTTGGGAACAATC--CC-GCTGCTCCCGT 1732
||||||||| |||||||||||||| ||||||||||||||||| | || |||||||||
Sbjct 1557 CGGGAATGAAAATTCACAACAGGCCTTCAATTTTGGGAACAACCAGCCCGCTGCTCCCCC 1616
Query 1733 TGGTGGATTCAAATTTGCCTGAAAAAGGTATACAGTAGTACAA 1775
|| |||||| |||||| ||||||| |||||||||||||||||
Sbjct 1617 AGGCGGATTCCAATTTGGCTGAAAA-GGTATACAGTAGTACAA 1658
> Ahg917300 jgi|Araly1|917300|Al_scaffold_0008_2051
Length=255
Score = 139 bits (75), Expect = 8e-32
Identities = 90/97 (93%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 187 AGACAGGCGTCGATGCCGATGAGGCCAGGCGGAGGAGAGAGGACAATCTCGTCGAGATTA 246
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 109 AGACAGGGGTCGATGCCGATGAGGCGAGGCGGAGGAGAGAGGACAATCTCGTCGAGATTA 168
Query 247 GGAAAAA-CAAGCGTGAGGATAGTCTTCTCAAGAAGC 282
| ||||| ||||||||| |||||||| |||| |||||
Sbjct 169 GAAAAAAACAAGCGTGATGATAGTCTCCTCACGAAGC 205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80637048665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5