BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09280.1
Length=1917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471018 jgi|Araly1|471018|fgenesh2_kg.1__972__AT1G09280.1 2926 0.0
> Ahg471018 jgi|Araly1|471018|fgenesh2_kg.1__972__AT1G09280.1
Length=1791
Score = 2926 bits (1584), Expect = 0.0
Identities = 1719/1786 (96%), Gaps = 2/1786 (0%)
Strand=Plus/Plus
Query 46 AAAGAAGAGAAACCCTAATGGGAACGAGCTCGTGTGGCGATCACGAGAAGCAGAGAATTG 105
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 7 AAAGAAGAGAAACCCTAATGGGAACGAGCTCGTGTGGCGATGGCGAGAAGCAGAGGATTG 66
Query 106 AAGATGAAGAGCAATACGGTGTGTTGCTGTACTACAAGTACACCTCTGTTCCTGATCTAG 165
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 67 AAGATGAAGAGCAATACGGTGTGTTGCTGTATTACAAGTACACCTCTGTCCCTGATCTAG 126
Query 166 ATGAGCTCGTTTCCTTCTATGAATCTAGCTGCAACTCATTAGGTCTACTCGGCCGAGTCA 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 ATGAGCTCGTTTCCTTCTATGAATCTAGCTGCAACTCATTAGGTCTACTCGGCCGAGTCA 186
Query 226 GGCTCTCCCCTAAAGGCGTCAATGTTACTGTTGGTGGGAAATTAACTGCATTGGAGGAAC 285
||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 187 GGCTCTCTCCTAAGGGAGTCAATGTCACTGTTGGTGGGAAATTAACTGCATTGGAGGAAC 246
Query 286 ATATTGCCGCTGCAAAGTCGAATTGTTTGTTTGAAGGGACTGACTTCAAGCTTGCATCTT 345
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 247 ATATTTCCGCTGCAAAGTCAAATTGTTTGTTTGAAGGGACTGACTTCAAGCTTGCATCTT 306
Query 346 GCCATCATCCCTTGAATGACAAAGTTGCTGAGGAATGTGGGTTTACATCACTCTCCATCC 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GCCATCATCCCTTGAATGACAAAGTTGCTGAGGAATGTGGGTTTACATCACTCTCCATCC 366
Query 406 GAGTTGTTGAGGAGTTAGTGACCTTTAGTCCTTGCCCTCCCCTTAAACCCCCAGAAATTT 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GAGTTGTTGAGGAGTTAGTGACCTTTAGTCCTTGCCCTCCCCTTAAACCCCCAGAAATTT 426
Query 466 CAAATGCTGGGAAGCATCTCTCTGCTGCAGAGTTTCATTCGGTCCTGCAGAGTGCCAATG 525
|||||||||| |||||||| |||||||| ||||||||||||||| |||||||||||||||
Sbjct 427 CAAATGCTGGAAAGCATCTTTCTGCTGCGGAGTTTCATTCGGTCTTGCAGAGTGCCAATG 486
Query 526 GGAAGTCTGAGAATAAGGAACTTGTTTTGCTTGACGCGAGGAACCTGTACGAGACACGGA 585
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 487 GGAAGTCTGAGAATAAGGATCTTGTTTTGCTTGATGCGAGGAACCTGTACGAGACACGGA 546
Query 586 TTGGAAAATTCGAATCAGAAAATGTGGAGACCCTTGATCCTGAAATCAGGCAATATAGCG 645
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 547 TTGGAAAATTCGAATCAGAAAATGTTGAGACCCTTGATCCTGAAATCAGGCAGTATAGCG 606
Query 646 ATTTGCCAACCTGGATTGATCAGAATGCCGAGAAAATGAAGGGCAAAAACGTGCTCATGT 705
|||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||
Sbjct 607 ATTTGCCAACCTGGATTGATCAGAATGCTGAGAAATTGAAGGGCAAAAATGTGCTCATGT 666
Query 706 ACTGCACTGGTGGAATCAGATGTGAAATGGCATCTGCATATATCAGATCTAAAGGTGCTG 765
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 667 ACTGTACTGGTGGAATCAGATGTGAAATGGCATCTGCATATATCAGATCTAAAGGCGCTG 726
Query 766 GATTTGAGAATACTTTTCAGCTCTATGGTGGCATACAGAGATACCTTGAACAATTTCCCA 825
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 GATTTGAAAATACTTTTCAGCTCTATGGTGGCATACAGAGATACCTTGAACAATTTCCCA 786
Query 826 GTGGTGGGTTCTTCAAAGGGAAGAACTTTGTGTTTGATCACCGGATCTCAGTTGGGAGCT 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GTGGTGGGTTCTTCAAAGGGAAGAACTTTGTGTTTGATCACCGGATCTCAGTTGGGAGCT 846
Query 886 CAAAAGAGGATATAATAGGCAGCTGCCTTCTCTGCAACAATACCTTTGACGACTATTCTC 945
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 847 CAAAAGAGGATATAATAGGCAGTTGCCTTCTCTGCAACAATAACTTTGACGACTATTCTC 906
Query 946 CACGTTGCCGTTGCAGATTATGCCGGATGCTTGTTTTAGTCTGCAATCATTGTCGGGTTA 1005
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 907 CACGTTGCCGTTGCAGATTATGCCGGATGCTTGTTTTAGTCTGCAATCACTGTCGGGTTA 966
Query 1006 AAGGAGatatatatatatGTGAGCTGTGTCGTAAACACGGAAAAGGGGAAGTCCCTTTGA 1065
|||||||||||||| | ||||||||||||||||||||||||||| | |||||||||||||
Sbjct 967 AAGGAGATATATATGTGTGTGAGCTGTGTCGTAAACACGGAAAAAGTGAAGTCCCTTTGA 1026
Query 1066 GTCTTGATCCCTTAAACCAACCTTCTGAAAGCAATGGTGACAATACAAGACGGAAGCTGA 1125
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 GTCTTGATCCCTCAAACCAACCTTCTGAAAGCAATGGTGACAATACAAGACGGAAGCTGA 1086
Query 1126 GGATCTTGTGCTTGCATGGATTTAGGCAGAACGCGTCTAGCTTTAAAGGGAGGACCGGAT 1185
|||| |||||||||||||| |||||||||||||||||| |||| ||||||||||||||||
Sbjct 1087 GGATATTGTGCTTGCATGGTTTTAGGCAGAACGCGTCTGGCTTCAAAGGGAGGACCGGAT 1146
Query 1186 CACTAGCAAAGAAACTGAAGAATATTGCCGAGCTTGTGTT-CATCGATGCACCACACGAA 1244
||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||
Sbjct 1147 CACTAGCAAAGAAACTGAAGAATATCGCCGAGCTTGTTTTTC-TCGATGCACCACACGAA 1205
Query 1245 TTACAGTTCATCTACCAAACTGCTACCCCTCCATCCGGAGTATGCAATAAGAAGTTTGCG 1304
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1206 CTACAGTTCATCTACCAAACTGCTACCCCTCCATCCGGAGCATGCAACAAGAAGTTTGCG 1265
Query 1305 TGGTTGGTGTCATCAGATTTTGATAAACCGAGTGAAACAGGCTGGACAGTGGCCCAATGC 1364
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1266 TGGTTGGTGTCATCAGATTTTGATAAACCGAGTGAAACAGGCTGGACAGTAGCCCAATGC 1325
Query 1365 CAGTTCGATCCATTGCAGTATCAGACTCAAACTGAAGGGTTTGATAAATCGTTGACATAC 1424
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 CAGTTCGATCCGTTGCAGTATCAGACTCAAACTGAAGGGTTTGATAAATCGTTGACATAC 1385
Query 1425 TTGAAGACGGCATTTGAAGAGAAAGGGCCTTTTGATGGCATTCTCGGATTCTCTCAAGGT 1484
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 TTGAAGACGGTTTTTGCAGAGAAAGGGCCTTTTGATGGCATTCTCGGATTCTCTCAAGGT 1445
Query 1485 GCAGCAATGGCTGCGGCTGTATGTGGGAAACAGGAGCAGCTCGTAGGTGAAATAGACTTC 1544
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 GCGGCAATGGCTGCAGCTGTATGTGGGAAACAGGAGCAGCTCGTAGGTGAAATAGACTTC 1505
Query 1545 AGATTCTGCGTGTTGTGCTCGGGTTTCACACCGTGGCCATTGTTGGAGATGAAGGAGAAA 1604
||||||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||
Sbjct 1506 AGATTCTGCGTACTGTGCTCGGGTTTCACAACGTGGCCATTGTTAGAGAAGAAGGAGAAA 1565
Query 1605 CGATCGATTAAATGCCCTTCACTTCACATATTCGGAAGTCAGCCTGGAAAAGACAGACAA 1664
||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1566 GGATCGATTAGATGCCCTTCACTTCACATATTTGGAAGCCAGCCTGGAAAAGACAGACAG 1625
Query 1665 ATTGTGACTCAAGCCAGCTCAGACCTGGCGGGGTTGTTTGAAGATGGTTGCGCCACCATT 1724
||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 1626 ATTGTGACTCAAGCCAGCTCAGATCTGGCGGGGTTGTTTGATGACGGTTGCGCCACCATT 1685
Query 1725 GTTGAGCACGATTTTGGCCACATCATTCCTACAAAGTCTCCTTATATTGATGAGATTAAA 1784
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1686 ATTGAGCATGATTTTGGCCACATCATTCCTACAAAGTCTCCTTATATTGATGAGATTAAA 1745
Query 1785 GCTTTCCTTTACCAATTCATTTGAGGACTTTATTAACAAGACAAGA 1830
||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1746 GCTTTCCTTTACCAATTCATTTGAGGACTATATTAACAAGACAAGA 1791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72028653295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5