BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09290.1
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471019 jgi|Araly1|471019|fgenesh2_kg.1__973__AT1G09290.1 1814 0.0
> Ahg471019 jgi|Araly1|471019|fgenesh2_kg.1__973__AT1G09290.1
Length=1248
Score = 1814 bits (982), Expect = 0.0
Identities = 1154/1235 (93%), Gaps = 19/1235 (2%)
Strand=Plus/Plus
Query 38 gagagTAACGATGGCTGCTGTAGAAGAAGTAGACGATGTTGGAAGAACAATAGAGGAAGA 97
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 18 GAGAGTAACGATGGCTGCTGCAGAACAAGTAGACGATGTTGGAAGAACAATAGAGGAAGA 77
Query 98 GACTGTGTGTGAAAAAAGAGAAAGAGGAGAGGAAGCTGAAACATTGACTCCATGGGAGCA 157
| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 78 GCCTGTGTGTGAAAAAAGAGAAAGAGGAGACGAAGCTGAAACATTGACTCCGTGGGAGCA 137
Query 158 ACACTCCAGCATCATAAGCATCCCTCGATTCGACTACAAAGCTCCCTCTTCTCTGCTTCA 217
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 138 ACACTCCAGCATCATAAGCATCCCTCGATTCGACTACAAAGCTCCATCTTCTCTGCTTCA 197
Query 218 TCATTCTCATTCCGGATTCCTCGTCACCTGCAACATCAAAAGGGAGAAAAGTGCTACTAA 277
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 198 TCATTCTCATTCCGGATTCCTAGTCACCTGCACCATCAAAAGGGAGAAAAGTGCTACTAA 257
Query 278 AGAGGTCATGTCCATCCTTGGAAAGTATATTGGGTCCATGCATGAGGAGAAACCTGAAGT 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 258 AGAGGTCATGTCCATCCTTGGAAAGTATATTGGGTCCATGCATGAGGAGAAACCTCAACT 317
Query 338 TCTAA-ACTCTACTGCATCCaaaaaacaaaaaGTTTGTGCACAAGAGACAGAGGAAGGCG 396
||||| | ||||||||||| |||||||||||| ||| || |||||||| ||||| ||||
Sbjct 318 TCTAAGA-TCTACTGCATCAAAAAAACAAAAACTTTCTGAACAAGAGATAGAGGTTGGCG 376
Query 397 GAGAGAAGACTGTACCTCTTGAGAATGATGCCTTGCAGGAAACAGGTGAAAATCCAAATG 456
||||||||| ||||||| |||| |||||||| ||||||||||||||| | |||||||||
Sbjct 377 AAGAGAAGACCGTACCTCCTGAGGATGATGCCCTGCAGGAAACAGGTGGAGATCCAAATG 436
Query 457 TTGAGGATCTTAAATTAGCAAATGAAGAACACAATTCTCTCATGTCATTGGTTAAGCTAA 516
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 437 TTGAGGATCTCAAATTAGCAAATGAAGAACACAATTCTCTCATGTCATTGGTTAAGCTGA 496
Query 517 CAAAGAGTGGCTTGCTTCTCTTTACTTTCCCTGTTGAAAACTCTCCCAATACAACGAATA 576
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 497 CAAAGAGTGGCTTGCTTCTCTTTACTTTCCCTGTTGAAAACTCTCCCGATACAACAAATA 556
Query 577 TCGTATCACGAGTCTTCCAGTCTATGGAATCTGGAGCTTTGAAGGCACCAATCTGGTGCC 636
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 TCGTATCACAAGTCTTCCAGTCTATGGAATCTGGAGCTTTGAAGGCACCAATCTGGTGCC 616
Query 637 ATCGGATATTCCCAGTTCAAGCTACTTGTGGTTTGACAGAGAAAGAACTTCGGGAAACAG 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 ATCGGATATTCCCAGTTCAAGCTACTTGTGGTTTGACAGAGAAAGAACTTCGGGAAACAG 676
Query 697 TATCAAAGCTTGTTCAGCGGTTTGTCAATGATAAAGACAATACACTATCAAAACCTGTGA 756
||||||||||||||||| |||||||| || |||||||||||| |||||||||||| ||||
Sbjct 677 TATCAAAGCTTGTTCAGAGGTTTGTCGATAATAAAGACAATATACTATCAAAACCCGTGA 736
Query 757 AGTTTGCAGCTGGGTATCAACGTAGAGGTGCGGAGGAGACGAAAGGAAAGATTCGGAAAG 816
||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 737 AGTTTGCAGCTGGGTATCAGCGTAGAGGTGTGGAGGAGACGAAAGGAAAGATTCAGAAAG 796
Query 817 ACGCTTCAGATGTTCTAGTTCAATGTCCGTTGCTGGACCGCATTAAATGCTTTGAAACTG 876
| || ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 797 AAGCATCAGAGGTTCTAGATCAATGTCCGTTGCTGGACCGCATCAAATGCTTTGAAACTG 856
Query 877 TGGCAGCTGGAGTGAAAGACATTGTACCAGATTCAGTTGTGGATCTCAAA-TCTCCAGAG 935
|||| |||||||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 857 TGGCGGCTGGAGTGAAAGACATTGTACCAGATTCAGTAGTGGATCT-AAAGTCTCCAGAG 915
Query 936 TTATGTGTTCTGGTGGAACTGTTACCGCTCTCTAGAATATCAAGTGGCTCCTTTGTAGCT 995
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 916 TTATGTGTTCTGGTGGAACTGTTACCGCTCTCTAGAATACCAAGTGGCTCCTTTGTAGCT 975
Query 996 GCTGTTTCAGTGCTTCCACATAGACTCGTTAGCACAAAGCCGAAACTCTGCATCAAGCCT 1055
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 GCTGTTTCAGCGCTTCCACATAGACTCGTTAGCACAAAGCCGAAACTCTGCATCAAGCCT 1035
Query 1056 CTAGTCCCTGAATCCAAACACAAAAAGGGACCAAACTGAC-AGGTGCAAAGGCTG-ATCG 1113
|||||||||||| ||||||||||||||||| |||||||| || |||||| || ||||
Sbjct 1036 CTAGTCCCTGAAAGCAAACACAAAAAGGGACAAAACTGACGAGCA-CAAAGG-TGTATCG 1093
Query 1114 CTGCATTCGATTTTCGAGAGCCAAAGATATCAATAGAAGTTGTAATCTCTCTGTTTTTGT 1173
||||||||| |||| ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1094 TTGCATTCGAATTTCCAGAGCCAAAGAGATCAATAGAAGTAGTAATCTCTCTGTTTTTGT 1153
Query 1174 TTAGATA---T--GTCTTTTGCTTTCAGTATCTCTAATGGAGTTAACAACAATGTCTGAC 1228
||||||| | |||||||||||||||||||||||||||||| |||||||| || | ||
Sbjct 1154 TTAGATACAGTATGTCTTTTGCTTTCAGTATCTCTAATGGAGTCAACAACAACGTGTAAC 1213
Query 1229 CTATGTT------ATTCAAGAGAACAAAGATAAAC 1257
| ||||| |||||||||| |||||||||||
Sbjct 1214 CAATGTTTTTTTTATTCAAGAGACCAAAGATAAAC 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47043679578
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5