BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G09290.1 Length=1259 Score E Sequences producing significant alignments: (Bits) Value Ahg471019 jgi|Araly1|471019|fgenesh2_kg.1__973__AT1G09290.1 1814 0.0 > Ahg471019 jgi|Araly1|471019|fgenesh2_kg.1__973__AT1G09290.1 Length=1248 Score = 1814 bits (982), Expect = 0.0 Identities = 1154/1235 (93%), Gaps = 19/1235 (2%) Strand=Plus/Plus Query 38 gagagTAACGATGGCTGCTGTAGAAGAAGTAGACGATGTTGGAAGAACAATAGAGGAAGA 97 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 18 GAGAGTAACGATGGCTGCTGCAGAACAAGTAGACGATGTTGGAAGAACAATAGAGGAAGA 77 Query 98 GACTGTGTGTGAAAAAAGAGAAAGAGGAGAGGAAGCTGAAACATTGACTCCATGGGAGCA 157 | |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 78 GCCTGTGTGTGAAAAAAGAGAAAGAGGAGACGAAGCTGAAACATTGACTCCGTGGGAGCA 137 Query 158 ACACTCCAGCATCATAAGCATCCCTCGATTCGACTACAAAGCTCCCTCTTCTCTGCTTCA 217 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 138 ACACTCCAGCATCATAAGCATCCCTCGATTCGACTACAAAGCTCCATCTTCTCTGCTTCA 197 Query 218 TCATTCTCATTCCGGATTCCTCGTCACCTGCAACATCAAAAGGGAGAAAAGTGCTACTAA 277 ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 198 TCATTCTCATTCCGGATTCCTAGTCACCTGCACCATCAAAAGGGAGAAAAGTGCTACTAA 257 Query 278 AGAGGTCATGTCCATCCTTGGAAAGTATATTGGGTCCATGCATGAGGAGAAACCTGAAGT 337 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 258 AGAGGTCATGTCCATCCTTGGAAAGTATATTGGGTCCATGCATGAGGAGAAACCTCAACT 317 Query 338 TCTAA-ACTCTACTGCATCCaaaaaacaaaaaGTTTGTGCACAAGAGACAGAGGAAGGCG 396 ||||| | ||||||||||| |||||||||||| ||| || |||||||| ||||| |||| Sbjct 318 TCTAAGA-TCTACTGCATCAAAAAAACAAAAACTTTCTGAACAAGAGATAGAGGTTGGCG 376 Query 397 GAGAGAAGACTGTACCTCTTGAGAATGATGCCTTGCAGGAAACAGGTGAAAATCCAAATG 456 ||||||||| ||||||| |||| |||||||| ||||||||||||||| | ||||||||| Sbjct 377 AAGAGAAGACCGTACCTCCTGAGGATGATGCCCTGCAGGAAACAGGTGGAGATCCAAATG 436 Query 457 TTGAGGATCTTAAATTAGCAAATGAAGAACACAATTCTCTCATGTCATTGGTTAAGCTAA 516 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 437 TTGAGGATCTCAAATTAGCAAATGAAGAACACAATTCTCTCATGTCATTGGTTAAGCTGA 496 Query 517 CAAAGAGTGGCTTGCTTCTCTTTACTTTCCCTGTTGAAAACTCTCCCAATACAACGAATA 576 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 497 CAAAGAGTGGCTTGCTTCTCTTTACTTTCCCTGTTGAAAACTCTCCCGATACAACAAATA 556 Query 577 TCGTATCACGAGTCTTCCAGTCTATGGAATCTGGAGCTTTGAAGGCACCAATCTGGTGCC 636 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 557 TCGTATCACAAGTCTTCCAGTCTATGGAATCTGGAGCTTTGAAGGCACCAATCTGGTGCC 616 Query 637 ATCGGATATTCCCAGTTCAAGCTACTTGTGGTTTGACAGAGAAAGAACTTCGGGAAACAG 696 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 617 ATCGGATATTCCCAGTTCAAGCTACTTGTGGTTTGACAGAGAAAGAACTTCGGGAAACAG 676 Query 697 TATCAAAGCTTGTTCAGCGGTTTGTCAATGATAAAGACAATACACTATCAAAACCTGTGA 756 ||||||||||||||||| |||||||| || |||||||||||| |||||||||||| |||| Sbjct 677 TATCAAAGCTTGTTCAGAGGTTTGTCGATAATAAAGACAATATACTATCAAAACCCGTGA 736 Query 757 AGTTTGCAGCTGGGTATCAACGTAGAGGTGCGGAGGAGACGAAAGGAAAGATTCGGAAAG 816 ||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| Sbjct 737 AGTTTGCAGCTGGGTATCAGCGTAGAGGTGTGGAGGAGACGAAAGGAAAGATTCAGAAAG 796 Query 817 ACGCTTCAGATGTTCTAGTTCAATGTCCGTTGCTGGACCGCATTAAATGCTTTGAAACTG 876 | || ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct 797 AAGCATCAGAGGTTCTAGATCAATGTCCGTTGCTGGACCGCATCAAATGCTTTGAAACTG 856 Query 877 TGGCAGCTGGAGTGAAAGACATTGTACCAGATTCAGTTGTGGATCTCAAA-TCTCCAGAG 935 |||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| Sbjct 857 TGGCGGCTGGAGTGAAAGACATTGTACCAGATTCAGTAGTGGATCT-AAAGTCTCCAGAG 915 Query 936 TTATGTGTTCTGGTGGAACTGTTACCGCTCTCTAGAATATCAAGTGGCTCCTTTGTAGCT 995 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 916 TTATGTGTTCTGGTGGAACTGTTACCGCTCTCTAGAATACCAAGTGGCTCCTTTGTAGCT 975 Query 996 GCTGTTTCAGTGCTTCCACATAGACTCGTTAGCACAAAGCCGAAACTCTGCATCAAGCCT 1055 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 976 GCTGTTTCAGCGCTTCCACATAGACTCGTTAGCACAAAGCCGAAACTCTGCATCAAGCCT 1035 Query 1056 CTAGTCCCTGAATCCAAACACAAAAAGGGACCAAACTGAC-AGGTGCAAAGGCTG-ATCG 1113 |||||||||||| ||||||||||||||||| |||||||| || |||||| || |||| Sbjct 1036 CTAGTCCCTGAAAGCAAACACAAAAAGGGACAAAACTGACGAGCA-CAAAGG-TGTATCG 1093 Query 1114 CTGCATTCGATTTTCGAGAGCCAAAGATATCAATAGAAGTTGTAATCTCTCTGTTTTTGT 1173 ||||||||| |||| ||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 1094 TTGCATTCGAATTTCCAGAGCCAAAGAGATCAATAGAAGTAGTAATCTCTCTGTTTTTGT 1153 Query 1174 TTAGATA---T--GTCTTTTGCTTTCAGTATCTCTAATGGAGTTAACAACAATGTCTGAC 1228 ||||||| | |||||||||||||||||||||||||||||| |||||||| || | || Sbjct 1154 TTAGATACAGTATGTCTTTTGCTTTCAGTATCTCTAATGGAGTCAACAACAACGTGTAAC 1213 Query 1229 CTATGTT------ATTCAAGAGAACAAAGATAAAC 1257 | ||||| |||||||||| ||||||||||| Sbjct 1214 CAATGTTTTTTTTATTCAAGAGACCAAAGATAAAC 1248 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47043679578 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5