BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09310.1
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471022 jgi|Araly1|471022|fgenesh2_kg.1__976__AT1G09310.1 1312 0.0
> Ahg471022 jgi|Araly1|471022|fgenesh2_kg.1__976__AT1G09310.1
Length=827
Score = 1312 bits (710), Expect = 0.0
Identities = 792/830 (95%), Gaps = 12/830 (1%)
Strand=Plus/Plus
Query 6 ACACAACTTCAGCT-TTAAGAC--AGCTAAAACTAAATACAAAGAAACAGAGATGGGTTT 62
|||||||||||| | || |||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1 ACACAACTTCAG-TCTTGAGACAAAGCTAAAACTAAAAACAAAGAAACAGAGATGGGTTT 59
Query 63 GGTTACAGAGGAGGTGAGAGCTAAGGCAGAGATGTACACCGGAGATGAGATATGTAGAGA 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 60 GGTTACAGAGGAGGTGAGAGCTAAGGCAGAGATGTACACCGGAGATGAGATATGCAGAGA 119
Query 123 GAAGACAAAGTGTTTCCTCAAGGAAATATCTATGCCCAATGGTTTATTACCATTGAAGGA 182
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 GAAGACAAAGTGTTTCCTCAAGGAAATATCTATGCCCAATGGCTTATTACCATTGAAGGA 179
Query 183 TATAGAAGAGGTTGGGTATGACAGAGAGTCAGGTGTTGTATGGCTGAAGCAGAAGAAGAG 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TATAGAAGAGGTTGGGTATGACAGAGAGTCAGGTGTTGTATGGCTGAAGCAGAAGAAGAG 239
Query 243 CATCACTCACAAGTTCACAGAGATAGATAAGCTTGTCTCCTATGGAACCGAAGTCACAGC 302
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 240 CATCACTCACAAGTTCACAGAGATCGATAAGCTTGTCTCCTATGGAACCGAGGTCACTGC 299
Query 303 CATTGTTGAGACCGGGAAAATCAAGAAGCTCACTGGAGTCAAAGCCAAGGAACTTCTTAT 362
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 300 CATTGTTGAGACCGGGAAAATCAAGAAACTCACTGGAGTCAAAGCCAAGGAGCTTCTTAT 359
Query 363 TTGGGTCACTATCAATGAGATCTATACCGAGGAACCCCCTACCAAGATCACGTTCAAGAC 422
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 360 TTGGGTCACTATCAATGAGATCTTTACTGAGGAACCCCCTACCAAGATCACGTTCAAGAC 419
Query 423 ACCGACCACACTGTCCAGGACTTTCCCGGTCACAGCTTTTATAGT-CC--CAGAAGAACC 479
||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||
Sbjct 420 ACCGACCACACTGTCCAGGACTTTCCCGGTCACAGCTTTTACAGTACCAGAAGAAGAACC 479
Query 480 TGCCAAGGAGGAACCTGCCAAAGAGGAACCTGCCAAGGAGAAGAGCAGCGAAGCCACCGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGCCAAGGAGGAACCTGCCAAAGAGGAACCTGCCAAGGAGAAGAGCAGCGAAGCCACCGA 539
Query 540 GGCCAAGGAGGCTGTTGCAATCAAGGAGGCTGTCGCAGTCAAAGAGGCGGCCTAATCA-G 598
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 540 GGCCAAGGAGGCTGTTGCAATCAAGGAAGCTGTCGCAGTCAAAGAGGCGGCCTAATCAAG 599
Query 599 C-TCAGCTTCAGCAGAT-AAAAGAGACCCGAATTTTTAAGTGTACTTCAAGAATTTGAAC 656
| || ||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CCTCTGCTTCAGCA-ATTAAAAGAGACCCGAATTTTTAAGTGTACTTCAAGAATTTGAAC 658
Query 657 AAATCATGGAGAGTTAGTGTTTCTCACTGCTCTAACTATCATGTATTATCTACCTACCAC 716
||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| |||
Sbjct 659 AAATCATGGAGGGTTAGTGTTTCTCACTGCTCTTACTATCATGTATTAT-TACCTATCAC 717
Query 717 TTGTTGCTGCTTGTTTTACCTGTAATAAGATATCAATATCATCCTGTTCCACTAAAACTT 776
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 718 TTGTTGCTGCTTGTTTTACCTGTAATAAGATATCAAAATCATCCTGTTCCACTAAAAATT 777
Query 777 ATCCTTAATTATCTATAAACTACAATACAGCTGGTTCTGTATGTCACTTC 826
|||| || |||||||||||||||| || ||||||||| |||||| |||||
Sbjct 778 ATCCGTAGTTATCTATAAACTACATTAAAGCTGGTTCCGTATGTAACTTC 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30536456517
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5