BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09320.1
Length=2018
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471023 jgi|Araly1|471023|fgenesh2_kg.1__977__AT1G09320.1 2870 0.0
> Ahg471023 jgi|Araly1|471023|fgenesh2_kg.1__977__AT1G09320.1
Length=1976
Score = 2870 bits (1554), Expect = 0.0
Identities = 1866/2009 (93%), Gaps = 52/2009 (3%)
Strand=Plus/Plus
Query 29 AAATCAAACCCCAAAACCCTAAAAAGCTGATTCCTTTCTTTGATTC-TCACTACCAATTC 87
|||||||||||||||||||||||||| ||| ||||||||| || |||||||||||||
Sbjct 1 AAATCAAACCCCAAAACCCTAAAAAGGTGA----TTTCTTTGA-TCTTCACTACCAATTC 55
Query 88 TTCCCGCCAGTTTCCTTTCCCCGATTCATCCTTGACACT-TGCAACGCCATG---TTGCG 143
||||||||||||||||||||||||||| ||||||||||| | |||||||||| |||||
Sbjct 56 TTCCCGCCAGTTTCCTTTCCCCGATTCGTCCTTGACACTCT-CAACGCCATGTCTTTGCG 114
Query 144 ---GC---CTC-G-C-CG---ATCTCTTGGGGTTTCATCTCCGGCGAAGCAGAGGAAGAA 191
|| ||| | | || ||||||||| | ||||||||||||||||||||||||||
Sbjct 115 TTTGCGGTCTCGGCCACGCCAATCTCTTGGTATCTCATCTCCGGCGAAGCAGAGGAAGAA 174
Query 192 AGCTGCTCCTAAGAATTCCATGGCTACGAGAGCGAATCGAAAGCGTCTCCCTTCTTACCT 251
| ||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 175 A---GCTCCTACGAATTCCATGGCTACGAGAGCCAATCGAAAGCGTCTGCCTTCTTACCT 231
Query 252 CAAACCTGGCTCCGCCGTAGAAATCAGCTCCGACGAGATTGGATTCCGCGGCTCGTGGTA 311
||||||||| || |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 232 AAAACCTGGCGCCACCGTGGAAATCAGCTCCGACGAGATTGGGTTCCGCGGCTCGTGGTA 291
Query 312 CATGGGAAAAGTAATCACCATC-CCATCTTCCTCAGATAAGGATTCCGTTAAATGCCAAG 370
| |||||||||| ||||||| | ||| |||||| ||||||||||| ||||||||||||
Sbjct 292 CCTGGGAAAAGTGATCACCA-CTCCA---TCCTCACATAAGGATTCCCTTAAATGCCAAG 347
Query 371 TCGAGTATACGACGCTCTTCTTCGATAAAGAGGGGACGAAGCCACTGAAGGAAGTTGTCG 430
||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 348 TCGAGTACACGACGCTCTTCTTCGACAAAGAGGGGACGAAGCCTCTGAAGGAAGTTGTCG 407
Query 431 ACATGAGTCAGCTTCGTCCTCCGGCCCCGCCAATGTCTGAGATAGAGAAGAAGAAGAAGA 490
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| | |
Sbjct 408 ACATGAGTCAGCTTCGTCCTCCGGCGCCGCCAATGTCTGAGAGAGAGAAGAAGAAGGATA 467
Query 491 TCGTGGTTGGGGAAGAGGTCGACGCGTTTTACAATGACGGTTGGTGGGAAGGGGATGTGA 550
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TCGCCGTTGGGGAAGAGGTCGACGCGTTTTACAATGACGGTTGGTGGGAAGGGGATGTGA 527
Query 551 CTGAGGTTCTGGATGATGGGAAATTCAGTGTTTTCTTTAGGAGCTCTAAGGAACAGATTC 610
| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 528 CGGAGGTTCTGGATGATGGGAAATTCAGTGTTTTCTTCAGGAGTTCTAAGGAGCAGATTC 587
Query 611 GGTTTAGGAAAGATGAGTTACGGTTTCATAGGGAATGGGTTGATGGAGCTTGGAAGCCTC 670
| ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||| |
Sbjct 588 GCTTTAGGAAAGATGAGCTACGGTTTCACAGGGAATGGCTTGATGGAGCTTGGAAGCCGC 647
Query 671 CATTAGAGGAAACAGAAGAAGAGGAAGATGAATCAGAGGAAGACAAATTAGACGACTCAG 730
||||||||||||| | | | ||||| |||||||||||||||||||||||||||||||
Sbjct 648 CATTAGAGGAAAC---TG-A-A-GAAGACGAATCAGAGGAAGACAAATTAGACGACTCAG 701
Query 731 AAGACGAGGAGGATATTTTAGCCCGAGTGGATCTAGAAACTACCAGAGCAATCGCGAAAC 790
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 702 AAGACGAGGAGGATATTTTAGCCCGAGTGGATCTGGAAACTACCAGAGCAATCGCGAAAG 761
Query 791 AAATGTTTTCCAGTGGCACTG-TTGTCGAGGTTAGCAGCGATGAGGAAGGTTTCCAGGGG 849
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 762 AAATGTTTTCCAGTGGCAC-GATTGTCGAGGTTAGCAGCGATGAGGAAGGTTTCCAGGGG 820
Query 850 TGTTGGTTTGCAGCTAAAGTTGTTGAACCCGTTGGCGAAGACAAATTTCTTGTTGAGTAC 909
||||||||||| |||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct 821 TGTTGGTTTGCTGCTAAAGTCGTTGAACCCATTGGCGAAGACAAATTCCTTGTTGAGTAC 880
Query 910 CGAGACTTGAGAGAAAAAGATGGTATAGAGCCTTTGAAAGAAGAAACCGATTTTCTGCAC 969
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 881 CGTGACTTGAGAGAAAAAGATGGCATAGAGCCTTTGAAAGAAGAAACCGATTTTCTGCAC 940
Query 970 ATAAGGCCGCCACCACCAAGGGATGAGGATATTGATTTTGCTGTTGGTGACAAGATTAAT 1029
|||||||||||||||||||| ||||||||||| |||||| ||||||| ||||||||||||
Sbjct 941 ATAAGGCCGCCACCACCAAGAGATGAGGATATAGATTTTTCTGTTGGGGACAAGATTAAT 1000
Query 1030 GCATTTTACAATGACGGCTGGTGGGTAGGTGTTGTCATAGATGGTATGAAGCATGGAACG 1089
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1001 GCATTTTACAATGACGGCTGGTGGGTAGGTGTTGTCATAGATGGCATGAAGGATGGAACA 1060
Query 1090 GTTGGTATATATTTTAGGCAATCACAAGAGAAGATGCGGTTTGGAAGGCAGGGGCTTCGT 1149
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1061 GTTGGTATATATTTTAGGCAATCACAAGAGAAGATGCTGTTTGGAAGGCAGGGGCTTCGT 1120
Query 1150 CTGCATAAAGATTGGGTTGACGGGACCTGGCAGCTACCACTGAAAGGAGGGAAGATAAAG 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 CTGCATAAAGATTGGGTTGACGGGACCTGGCAGCTACCACTGAAAGGAGGGAAGATAAAG 1180
Query 1210 AGGGAAAAGACTGTTTCATGTAACCGGAACGTGAGACCCAAGAAAGCAACTGAGAAGCAA 1269
|||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1181 AGGGAAAAGACTGTTTTATGTAATCGGAACGTGAGACCCAAGAAAGCAACGGAGAAGCAA 1240
Query 1270 GCGTTCAGCATTGGAACTCCGATCGAGGTTAGCCCTGAGGAAGAAGGATTTGAAGATTCT 1329
|| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1241 GCATTCAGCATTGGAACTCCGGTCGAGGTTAGCCCTGAGGAAGAAGGGTTTGAAGATTCT 1300
Query 1330 TGGTTTCTTGCAAAACTTATTGAATACAGAGGAAAGGACAAATGCCTTGTAGAATATGAT 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 TGGTTTCTTGCAAAACTTATTGAATACAGAGGAAAGGACAAATGCCTTGTAGAATATGAT 1360
Query 1390 AATCTGAAAGCTGAAGATGGGAAAGAGCCTTTGAGAGAAGAGGTTAATGTTTCACGGATA 1449
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1361 AAACTGAAAGCTGAAGATGGGAAAGAACCTTTGAGAGAAGAGGTTAATGTTTCACAGATA 1420
Query 1450 AGGCCTCTGCCACTAGAGAGTGTCATGGTTAGTCCATTTGAGAGGCATGACAAAGTTAAT 1509
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1421 AGGCCTCAACCACTAGAGAGTGTCATGGTTAGTCCATTCGAGAGGCATGACAAAGTTAAT 1480
Query 1510 GCTTTGTATAATGATGGATGGTGGGTTGGGGTGATTAGAAAGGTTCTTGCAAAGTCATCT 1569
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1481 GCTTTGTATAATGATGGATGGTGGGTCGGGGTGATTAGGAAGGTTCTTGCAAAGTCATCT 1540
Query 1570 TACCTGGTTCTCTTTAAAAATACTCAAGAGCTGCTAAAATTTCATCACTCTCAACTAAGG 1629
||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1541 TACCTGGTTCTCTTTGAAAATACTCAAGAGATGCTAAGATTTCATCACTCTCAACTAAGG 1600
Query 1630 CTACATCAGGAATGGATTGATGGAAAGTGGATAACATCTTTTAAGTCTCAGAAGGTGTAA 1689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 CTACATCAGGAATGGATTGATGGAAAGTGGATAACATCTTTTAAGTCTCAGAAGGTGTAA 1660
Query 1690 ATGGGCTGGATAACTCGTCAGGATTTTGGGATTTCAAGTTTTGTTTTTCTTTGAGGTACT 1749
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1661 ATGGGCTGGATAACTCGTCAGGATTTTGGGATCTCAAGTTTTGTTTTTCTTTGAGGTACT 1720
Query 1750 TGTATCTCTTAGTCAGTTAGTCTTAACCCTGGTGTTCCCTTGCTATTGTAGATAATTGCA 1809
|||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||
Sbjct 1721 TGTATCTCTTAGTC--TTA-----A-CCCTGATGTTCCCTTGCTATTGTAGATAATTGCA 1772
Query 1810 GTTATGATGAGTGACTAAGATGCAACAACCAGTTGATATTTTATTCTTGTTCCATGACAT 1869
| ||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1773 GAAATGATGATTGACTAAGATGCAACAACCAGTTGATATTT-ATTGTTGTTCCATGACAT 1831
Query 1870 AGTGCGATTCTCATTGCTCCTGATTTCGGTTGATTATTTGATAGACAAGTTTTTGCTGTA 1929
| |||| |||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 1832 ACTGCGGTTCTCAATGCTCCTCATTTCTGTTGATTATTTGATAAACAAGTTTTTGCTGTA 1891
Query 1930 ACACTACTTCCTTGCCTTGTTGATTATCCATCCTATTGTCAAATATTTTTCGAAAGAGGT 1989
| ||||||| ||||||| ||| |||||| | |||||||||||||||| |||| ||||
Sbjct 1892 AGGCTACTTCTTTGCCTTATTGGTTATCC-T---ATTGTCAAATATTTTTTGAAAAAGGT 1947
Query 1990 AGGCCATATTACCTACGAAGTTTAGCATC 2018
||| ||||||||||||||| |||||||||
Sbjct 1948 AGGTCATATTACCTACGAAATTTAGCATC 1976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75875768040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5