BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09330.1
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471024 jgi|Araly1|471024|fgenesh2_kg.1__978__AT1G09330.1 1362 0.0
> Ahg471024 jgi|Araly1|471024|fgenesh2_kg.1__978__AT1G09330.1
Length=954
Score = 1362 bits (737), Expect = 0.0
Identities = 913/989 (92%), Gaps = 47/989 (5%)
Strand=Plus/Plus
Query 10 AGAAGAAATCACGTAGCAGACACGCGCAAGAGTTTTGAAGATCTGATACAGAAATTTTTT 69
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AGAAGAAATCACGTAGCAGACACGCGCAAGAGTTTTGAAGATCTGATACAGAAA---ATT 57
Query 70 CTCGGGAAAATTCAGAGGGAAGATCGATACTTTCCACAACGGAGAAGGTGTTTCGTTTCT 129
|| | ||||||||||||| | | || | | |||||||| ||||||
Sbjct 58 -TC------A--GAGAGGGAAGATCG--A---T----AA--G-G-AGGTGTTTTGTTTCT 95
Query 130 GCTGATCAGCAGATTACTTCTTC-TTTTTCTCGGATTGATCCTTTTGGATTCTTCGAAAG 188
||||||||||||||||||| ||| ||||| || | || ||||||||||||||||||
Sbjct 96 GCTGATCAGCAGATTACTTGTTCGTTTTT-TC-G---GA---TTTTGGATTCTTCGAAAG 147
Query 189 ATGGACCCTAATAATCAGATACAGGCACCAGTTGAAAATTATGCAAACCCAAGGACATGT 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 ATGGACCCTAATAATCAGATACAGGCACCAGTTGAAAATTATGCAAACCCAAGGACATGC 207
Query 249 CTTTTCCATGTTCTCTTCAAGGGTGCTGCGTTGGCGTTTTACATTCTCTCTGCTCTCTTC 308
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 208 CTTTTCCATGTTCTCTTCAAGGGTGCTGCGTTGGCGTTCTACATTCTCTCTGCGCTCTTC 267
Query 309 TTCAACAGCTTTGTCATCATCTTTGTAGTCACTGTTCTTCTTGCTGCTCTTGACTTCTGG 368
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 268 TTTAACAGCTTTGTCATCATCTTTGTAGTGACTGTTCTTCTTGCTGCCCTTGACTTCTGG 327
Query 369 GTGGTTAAGAATGTCAGTGGGCGTATACTGGTTGGTCTCAGGTGGTGGAACGAGATCAAT 428
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 328 GTGGTTAAGAATGTCAGTGGGCGTATACTGGTTGGTCTCAGGTGGTGGAATGAGATCAAT 387
Query 429 GACTTGGGAGAAAGTGTCTGGAAATTCGAGTCTCTTGATCAGGAGTCTTTGGCTCGGATG 488
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 388 GACTTGGGAGAAAGTGTCTGGAAATTCGAGTCTCTTGACCAGGAGTCCTTGGCTCGGATG 447
Query 489 AACAAGAAAGACTCATGGCTTTTCTGGTGGACACTTTACCTTGCAGCAGCTGCATGGTTT 548
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 448 AACAAGAAAGACTCGTGGCTTTTCTGGTGGACGCTTTACCTTGCAGCAGCTGCATGGTTT 507
Query 549 ATCCTTGGGGTATTTTCTCTGATTAGATTTCAAGCTGACTATCTGCTTGTTGTTGGCGTT 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 ATCCTTGGGGTATTTTCTCTGATTAGATTTCAAGCTGACTATCTGCTTGTTGTTGGCGTT 567
Query 609 TGCTTGTCCCTCAATGTGGCTAATATCATCGGCTTCACAAAGTGCAAGAAAGATGCAAAG 668
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TGCTTGTCCCTCAACGTGGCTAATATCATCGGCTTCACAAAGTGCAAGAAAGATGCAAAG 627
Query 669 AAACAATTTCAGCAGTTTGCTTCGCAGACAATCGCATCACGGTTCCAATCAACAGTACAA 728
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 628 AAACAATTTCAGCAGTTTGCCTCGCAGACAATCGCATCAAGGTTCCAATCAACAGTACAA 687
Query 729 TCTGCCTTCACCCTTGTCTGAAGAGAAGAAAGAC-GCtttttttAAGGGCTGTGAGAGCA 787
||||| ||||||||||||||||||||||||| || ||||||| ||||| ||||||||||
Sbjct 688 TCTGCTTTCACCCTTGTCTGAAGAGAAGAAATACAGCTTTTT--AAGGGTTGTGAGAGCA 745
Query 788 AAGAC-G---GTGTACAAAGAAGATTGCCAAAACGACATGGTTGGTTTTTT-GACTGATT 842
|||| | ||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 746 AAGAAAGACAGTGTACAAAGAAGATTGCCTAAACGACATGGTTGGTTTTTTTGACTGATT 805
Query 843 GGTTTCAAATGTTTTGTAAGA-TTTAAGAGGTCCTATATTCGTCTTTCTATGTATTTTAC 901
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 806 GGTTTCAAATGTTTTGTAAGGGTTTAAGAGGTCCTATATTCGTCTTTATATGTATTTTAC 865
Query 902 ATTTTCGACTTACCTATTAACATTTTGCATCTCGTATGGTCTT---ATTATACGTATATT 958
| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 866 AATTTCGACTTACCTATTAACATTTTGCATCTCGTATGGTCTTCTTATTATACATATATT 925
Query 959 -AGCCCTAAAGAAAAATCAGAAATTTTAA 986
||||| |||||||| |||||||||||||
Sbjct 926 TAGCCCGAAAGAAAATTCAGAAATTTTAA 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36788614905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5