BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09350.1
Length=1301
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311978 jgi|Araly1|311978|fgenesh1_pm.C_scaffold_1000758 1640 0.0
> Ahg311978 jgi|Araly1|311978|fgenesh1_pm.C_scaffold_1000758
Length=1005
Score = 1640 bits (888), Expect = 0.0
Identities = 967/1006 (96%), Gaps = 2/1006 (0%)
Strand=Plus/Plus
Query 70 ATGGCACCTGAGATGAACAACAAGTTGAGCTACGGAGAAAAGAAGAGAGCGTACGTTACG 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCACCTGAGATGAACAACAAGTTGAGCTACGGAGAAAAGAAGAGAGCGTACGTTACG 60
Query 130 TTCCTCGCCGGAACCGGAGACTACGTGAAAGGAGTGGTTGGTCTGGCTAAAGGGCTAAGG 189
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCCTAGCCGGGACCGGAGACTACGTGAAAGGAGTGGTTGGTCTGGCTAAAGGGCTAAGG 120
Query 190 AAAACTAAAAGCAAGTACCCATTAGTGGTTGCTGTGTTACCTGACGTGCCGGCCGATCAC 249
||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 121 AAAGCTAAAAGCAAGTACCCATTAGTGGTTGCTGTGTTACCTGACGTCCCGGTGGATCAC 180
Query 250 CGGAGACAGCTATTGGACCAAGGCTGCGTCATCAAGGAGATTCAGCCGGTTTACCCACCG 309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 CGGAGACAGCTATTGGACCAAGGCTGCGTCATCAAGGAGATTCAGCCGGTTTACCCGCCG 240
Query 310 GATAACCAAACTCAGTTTGCTATGGCTTACTACGTCCTCAACTACTCTAAACTTCGTATT 369
|| ||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 241 GAGAACCAAACTCAGTTTGCCATGGCTTACTACGTCCTCAACTACTCCAAGCTTCGTATT 300
Query 370 TGGAAGTTTGTAGAGTACAGCAAGCTGATATACTTAGACGGAGACATACAAGTGTTTGAG 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGGAAGTTTGTAGAGTACAGCAAGCTGATATACTTAGACGGAGACATACAAGTGTTTGAG 360
Query 430 AACATAGATCACTTGTTTGATCTTCCTGACGGCAACTTCTACGCCGTTAAAGACTGTTTC 489
||| ||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 361 AACGTAGATCACTTGTTCGATCTTCCCGACGGCAATTTCTACGCCGTTAAAGATTGTTTC 420
Query 490 TGCGAGAAGACTTGGAGCCACACGCCTCAGTACAAGATTGGCTACTGCCAACAGTGTCCG 549
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 TGCGAGAAGACATGGAGCCACACGCCTCAGTACAAGATCGGCTACTGCCAACAGTGTCCG 480
Query 550 GACAAGGTGACGTGGCCTGAGTCAGAGCTTGGTCCTAAGCCACCGTTGTACTTCAACGCC 609
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 481 GACAAGGTGACGTGGCCAGAGACAGAGCTTGGTCCTAAGCCACCGTTGTACTTCAACGCC 540
Query 610 GGCATGTTCGTCTACGAGCCAAGCCTCCCCACTTATTACAACCTTTTGGAGACACTCAAA 669
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 GGCATGTTCGTCTACGAGCCAAGCCTCCCCACTTATTACAACCTTTTGGAGACTCTCAAA 600
Query 670 GTTGTCCCTCCCACACCTTTTGCTGAACAGGATTTCTTGAACATGTACTTCAAAGACATA 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTTGTCCCTCCCACACCTTTTGCTGAACAGGATTTCTTGAACATGTACTTCAAAGACATA 660
Query 730 TACAAGCCTATTCCACCAGTTTACAATCTTGTCTTGGCCATGCTCTGGAGGCATCCAGAG 789
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 TACAAGCCTATTCCACCAGTATACAATCTTGTCTTGGCCATGCTCTGGAGGCATCCAGAG 720
Query 790 AACATAGAGCTTAACGAAGCTAAGGTTGTTCATTACTGTGCAGCCGGTGCTAAGCCTTGG 849
|||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 721 AACATAGAGCTTGACGAAGCCAAGGTTGTTCATTACTGTGCAGCTGGTGCTAAGCCTTGG 780
Query 850 AGGTTCACAGGCCAAGAAG-GAAATATGGAGAGGGAAGACATCAAGATGCTTGTAGAGAA 908
||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||
Sbjct 781 AGGTTCACAGGCCAAGAAGAGAA-TATGGAGAGAGAAGACATCAAGATGCTTGTAGAGAA 839
Query 909 ATGGTGGGACATTTACAACGACGAGTCTCTTGACTACAAAAACTTTAATGTGCATTGCGG 968
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 840 ATGGTGGGACATTTATAACGACGAGTCACTTGACTACAATAACTTTAATGTGCATTGCGG 899
Query 969 ACAAAAAGAAGATGTTCACAGGAAACCGAAAACCCTTCCACAGTTCTTTACAGATTTGTC 1028
||||||||||||||| |||| ||||| | |||| |||||||||||||||||||| |||||
Sbjct 900 ACAAAAAGAAGATGTCCACAAGAAACAGCAAACACTTCCACAGTTCTTTACAGAATTGTC 959
Query 1029 TGAAGCTGATGTGCTTCAATGTGCCAAAGCTCCATCCGCGGCTTAG 1074
||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 TGAAGCTGATGTGCTTCAATGCACCAAAGCTCCATCCGCGGCTTAG 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48644842092
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5