BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09360.1
Length=567
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919690 jgi|Araly1|919690|scaffold_100971.1 904 0.0
> Ahg919690 jgi|Araly1|919690|scaffold_100971.1
Length=609
Score = 904 bits (489), Expect = 0.0
Identities = 541/567 (95%), Gaps = 0/567 (0%)
Strand=Plus/Plus
Query 1 ATGATCGTTCTTGTTCTTTATATTTTTACTCCTCACATTGAAGGAGTCGAAGCCGATGGA 60
||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 23 ATGATCGTTCTTGTTCTTTATATTTTTACTCCTCACATTGAAGCAATCAAAGCCGATGGA 82
Query 61 CCAACAGAAGCACTGATCAATAGTATTTGCATAGAAAACGAAGATTATGGATTTTGCAAT 120
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 83 GCAACAGAAGCACTGATCAATAGTATCTGCATCGAAAACGAAGATTATGGATTTTGCAAT 142
Query 121 AAAATCATCCATGAAAAATTGAAGACACCAACGGCTACTATCAAAGAACTCACGAGTCTC 180
|||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct 143 AAAATCATCCATGAAAAATTGAAGGCACCAACGGCTACCATCAAAGAACTCACCAGTCTG 202
Query 181 ATAATATACACCACTATGGCTCACGCCAGTGATACTTACATTTTCATCGATAACATCCTC 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 203 ATAATATACACCACTATGGATCACGCCAGTGATACTTACATTTTCATCGATAACATCCTC 262
Query 241 CGCAAATGGCCTGGCCCTAAGGAGACGAGTGGTCTCAAGACTTGTCATGCAGTTTATAAG 300
||| ||||||||| |||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 263 CGCGAATGGCCTGTCCCTAAGGAGACAACTGGTCTCAAGACTTGTCATGAAGTTTATAAT 322
Query 301 AGAGAGACCAATAGTTTCTTAGAAATTCGCTTTCTATTTTCAAAAGGAGAGTACGAACTT 360
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 323 AGAGAGACAAATAGTTTCTTAGAAATTCGATTTCTATTTTCAAAAGGAGAGTACGAACGT 382
Query 361 ATGGATGAAGCCATTTTGTCCACAGCCAAGATCTTAGAAGAGTGTAGGGGCGATTTTCTT 420
|||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 383 ATGGGTGTAGCCATTTTGTCCACAGCCAAGATCTTAGAAGATTGTAGGGGCGATTTTCTT 442
Query 421 ATTCCTCCTTACAAGGAGCCTCTGCTTGAGAAGAAGAGAGTTATGAGAATATTGATCACC 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 443 ATTCCTCCTTACAAGGAGCCTCTGATTGAGAAGAAGAGAGTTATGAGAATATTGATCACC 502
Query 481 ATGTCTGCTGTTTCTGGACATATGGTCAAAAATGAGAAGGCTTCCTTGATTAGCTCAGTA 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 503 ATGTCTGCTGTTTCTGGACATATGATCAAAAATGAGAAGGCTTCCTTGATTAGCTCAGTA 562
Query 541 GTTACTGCCCAGTTTTTCAATATTTGA 567
|||||||| ||||||||||||||||||
Sbjct 563 GTTACTGCGCAGTTTTTCAATATTTGA 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20718484827
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5