BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G09370.1 Length=540 Score E Sequences producing significant alignments: (Bits) Value Ahg471028 jgi|Araly1|471028|fgenesh2_kg.1__982__AT1G09370.1 821 0.0 > Ahg471028 jgi|Araly1|471028|fgenesh2_kg.1__982__AT1G09370.1 Length=540 Score = 821 bits (444), Expect = 0.0 Identities = 509/541 (94%), Gaps = 2/541 (0%) Strand=Plus/Plus Query 1 TGAAAATGCATCACATTCTCTCGATAGTTTTGGCAATTATACTCGCTTCCTCCGTTGCAG 60 |||||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||| Sbjct 1 TGAAAATGCATCGCATTCTCTCGATAGTTTTGGCGATTATACTCGCTTTCTCGGTTGCAG 60 Query 61 AAGCTTTTCTCGATGAAAAAACTCAACAAAGGGTCAACGGAATCTGCAAGCAGACAATGG 120 |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || Sbjct 61 AAGCTTTTCTCGATGAAAAAACTCAACAAATGGTCAACGGAATCTGCAAACAGACAACGG 120 Query 121 ATACCAGATTTTGCAGTAGTCTCTTGATCAAGAACCTGAATACTTTTCCCGCAAGTAACA 180 |||||| ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| Sbjct 121 ATACCAAATTTTGCAGTAGTGTCTTGCTCAAGAACCTGAATACTCTTCCCGCAAGTAACA 180 Query 181 AAGAAATCATGAACGTGACAGTAAGCGAAGCTGAAAGGTTCGCGGCCAACACTTATTTCT 240 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 181 AAGATATCATGAACGTGACAGTAAGCGAAGCTGAAAGATTCGCGGCCAACACTTATTTCT 240 Query 241 TCATCAGCACGCTTCTCAGGAATGCTGGAGACGAGAGGCCTGATCTTCAAGCGTGCGCCG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCATCAGCACGCTTCTCAGGAATGCTGGAGACGAGAGGCCTGATCTTCAAGCGTGCGCCG 300 Query 301 AAGCTTACGCCATTGTGAACTCGGCGTTCACGAAAGCTGTAACCTTCTTCAAGCAAGCTT 360 |||||||||| ||||||||||||||||||||||| |||||| | |||||||||||||||| Sbjct 301 AAGCTTACGCTATTGTGAACTCGGCGTTCACGAATGCTGTATCTTTCTTCAAGCAAGCTT 360 Query 361 ACTACAGTAAGATTGTCAATATCGAAAAGAAAGTTTCTATGGCTGTTGATATCTGTAAGA 420 |||||| |||||| ||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 361 ACTACAATAAGATCGTCAAGATCGAAAAGAAAGTTTCTACGGCTGTTGATATCTGTAAGA 420 Query 421 CAGATTTCAATGTGCTCGGTTATCAGATCAATCCG-TTGATTGAGAAAAACAGACAGACG 479 |||||||| |||||| ||||||| ||||||||||| ||| |||||| ||||||||||||| Sbjct 421 CAGATTTCTATGTGCCCGGTTATAAGATCAATCCGCTTG-TTGAGAGAAACAGACAGACG 479 Query 480 AAGATCTTACTATCCATGGAACAGATTGTTAGTCATATGGTTTCTTCATAATCTGATTGT 539 ||||||||| |||| |||||| |||||||||||||||||||||||||||||| || |||| Sbjct 480 AAGATCTTAGTATCGATGGAAAAGATTGTTAGTCATATGGTTTCTTCATAATATGTTTGT 539 Query 540 T 540 | Sbjct 540 T 540 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19688283924 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5