BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09370.1
Length=540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471028 jgi|Araly1|471028|fgenesh2_kg.1__982__AT1G09370.1 821 0.0
> Ahg471028 jgi|Araly1|471028|fgenesh2_kg.1__982__AT1G09370.1
Length=540
Score = 821 bits (444), Expect = 0.0
Identities = 509/541 (94%), Gaps = 2/541 (0%)
Strand=Plus/Plus
Query 1 TGAAAATGCATCACATTCTCTCGATAGTTTTGGCAATTATACTCGCTTCCTCCGTTGCAG 60
|||||||||||| ||||||||||||||||||||| ||||||||||||| ||| |||||||
Sbjct 1 TGAAAATGCATCGCATTCTCTCGATAGTTTTGGCGATTATACTCGCTTTCTCGGTTGCAG 60
Query 61 AAGCTTTTCTCGATGAAAAAACTCAACAAAGGGTCAACGGAATCTGCAAGCAGACAATGG 120
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 61 AAGCTTTTCTCGATGAAAAAACTCAACAAATGGTCAACGGAATCTGCAAACAGACAACGG 120
Query 121 ATACCAGATTTTGCAGTAGTCTCTTGATCAAGAACCTGAATACTTTTCCCGCAAGTAACA 180
|||||| ||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 121 ATACCAAATTTTGCAGTAGTGTCTTGCTCAAGAACCTGAATACTCTTCCCGCAAGTAACA 180
Query 181 AAGAAATCATGAACGTGACAGTAAGCGAAGCTGAAAGGTTCGCGGCCAACACTTATTTCT 240
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 AAGATATCATGAACGTGACAGTAAGCGAAGCTGAAAGATTCGCGGCCAACACTTATTTCT 240
Query 241 TCATCAGCACGCTTCTCAGGAATGCTGGAGACGAGAGGCCTGATCTTCAAGCGTGCGCCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCATCAGCACGCTTCTCAGGAATGCTGGAGACGAGAGGCCTGATCTTCAAGCGTGCGCCG 300
Query 301 AAGCTTACGCCATTGTGAACTCGGCGTTCACGAAAGCTGTAACCTTCTTCAAGCAAGCTT 360
|||||||||| ||||||||||||||||||||||| |||||| | ||||||||||||||||
Sbjct 301 AAGCTTACGCTATTGTGAACTCGGCGTTCACGAATGCTGTATCTTTCTTCAAGCAAGCTT 360
Query 361 ACTACAGTAAGATTGTCAATATCGAAAAGAAAGTTTCTATGGCTGTTGATATCTGTAAGA 420
|||||| |||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 ACTACAATAAGATCGTCAAGATCGAAAAGAAAGTTTCTACGGCTGTTGATATCTGTAAGA 420
Query 421 CAGATTTCAATGTGCTCGGTTATCAGATCAATCCG-TTGATTGAGAAAAACAGACAGACG 479
|||||||| |||||| ||||||| ||||||||||| ||| |||||| |||||||||||||
Sbjct 421 CAGATTTCTATGTGCCCGGTTATAAGATCAATCCGCTTG-TTGAGAGAAACAGACAGACG 479
Query 480 AAGATCTTACTATCCATGGAACAGATTGTTAGTCATATGGTTTCTTCATAATCTGATTGT 539
||||||||| |||| |||||| |||||||||||||||||||||||||||||| || ||||
Sbjct 480 AAGATCTTAGTATCGATGGAAAAGATTGTTAGTCATATGGTTTCTTCATAATATGTTTGT 539
Query 540 T 540
|
Sbjct 540 T 540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19688283924
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5