BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09380.1
Length=1568
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919693 jgi|Araly1|919693|scaffold_100974.1 1892 0.0
> Ahg919693 jgi|Araly1|919693|scaffold_100974.1
Length=1168
Score = 1892 bits (1024), Expect = 0.0
Identities = 1113/1155 (96%), Gaps = 10/1155 (1%)
Strand=Plus/Plus
Query 205 AATAAAATAAAAGAGAGTGAGAGATGGCTAAATCAGATATGTTGCCGTTCTTGGCGATGG 264
|||| ||| ||| ||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 AATAGAATTAAA-AGA--GAGAGATGGCTAAATCAGATATGCTGCCGTTCTTGGCGATGG 57
Query 265 TGTTGGTGCAAATCGGCTACGCAGGCATGAACATTACGTCGAAGATGGCTATGGAGGCCG 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TGTTGGTGCAAATCGGCTACGCAGGCATGAACATTACGTCGAAGATGGCTATGGAGGCCG 117
Query 325 GTATGAAGCCACTCATCCTGGTCGCTTATCGTCAGATATTTGCCACTATCGCCACTTTTC 384
| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 118 GCATGAAGCCTCTCATTCTGGTCGCTTATCGCCAGATATTTGCCACTATCGCCACTTTTC 177
Query 385 CGGTCGCATTTTTTCTCGAACGGAAGACAAGACCGAAGATCACACTTAGGATTCTTGTCC 444
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct 178 CGGTCGCATTTTTTCTCGAACGGAAGACAAGACCAAAGATCACACTTAGGGTTCTTGTTC 237
Query 445 AAGTCTTCTTCTGCTCCATTACTGGTGCGACTGGAAACCAAGTGCTATATTTCGTAGGAC 504
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 238 AAGTCTTCTTCTGCTCCATTACTGGTGCGACTGGAAACCAAGTGCTATACTTCATAGGAC 297
Query 505 TTCAGAATTCATCTCCGACCATTGCTTGTGCCTTAACTAATCTCTTACCAGCGGTCACTT 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTCAGAATTCATCTCCGACCATTGCTTGTGCCTTAACTAATCTCTTACCAGCGGTCACTT 357
Query 565 TCCTCCTCGCCGCAATATTCAGACAAGAAACCGTGGGGATCAAGAAGGCATCAGGACAAG 624
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 358 TCCTCCTCGCCGCAATATTCAGACAAGAAACCGTAGGGATCAAGAAGGCATCAGGACAAG 417
Query 625 CCAAAGTGATAGGGACGCTAGTATGTGTGATCGGAGCCATGGTTCTCTCCTTCTACCATG 684
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 418 CCAAAGTGATAGGGACGCTAGTATGTGTGATCGGAGCCATGGTTCTCTCCTTTTACCATG 477
Query 685 GTCACACCATCGGCATTGGAGAATCCAAGATCCATTGGGCCTACGCTGAAAACATCACGA 744
|||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||| |
Sbjct 478 GTCACACCATTGGCATTGGAGAGTCCAAGATTCATTGGGCCTATGCTGAAAACATCAC-A 536
Query 745 A-ACATGGTTCCAGTTCTGGCCATTCTAATTTCTTCTTGGGACCTTTTCTTATTATGGCT 803
| ||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 537 AGACAGGGTTCCAGTTCTGCCCATTCTAACTTCTTCTTGGGACCTTTTCTTATTATGGCT 596
Query 804 GCTGCCGTTTCTTGGGCCGCTTGGTTCATTATCCAGACGAAGATGAGTGAAACATTTGCA 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GCTGCCGTTTCTTGGGCCGCTTGGTTCATTATCCAGACGAAGATGAGTGAAACATTTGCA 656
Query 864 GCACCGTACACGAGCACACTACTAATGTGTTTGATGGGAAGTATCCAATGTGGAGCCATT 923
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 657 GCACCATACACGAGCACACTTCTAATGTGTTTGATGGGAAGTATCCAATGTGGAGCCATT 716
Query 924 GCTTTGATCTCCGATCATACAA-TCTCTGATTGGTCTCTCAGCTCTCCTCTCCGCTTCAT 982
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 717 GCTTTGATCTCCGATCATA-AACTCTCTGATTGGTCTCTCAGCTCTCCTCTCCGCTTCAT 775
Query 983 ATCCGCCCTTTATGCCGGAGTGGTGGCGTCTGCGTTAGCTTTCTGCCTAATGTCATGGGC 1042
||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 776 ATCCGCCCTATACGCCGGAGTGGTGGCGTCTGCGTTAGCGTTCTGCCTAATGTCATGGGC 835
Query 1043 TATGCAGAGGAAAGGTCCTCTGTACGTCTCTGTTTTCAGCCCTTTACTTCTCGTAGTTGT 1102
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 836 TATGCAGAGGAAAGGTCCTCTGTACGTCTCTGTTTTCAGCCCTTTACTTCTGGTAGTAGT 895
Query 1103 CGCCATTTTCAGCTGGGCTCTTCTTGAAGAGAAACTCTACACCGGCACGTTTATGGGATC 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CGCCATTTTCAGCTGGGCTCTTCTTGAAGAGAAACTCTACACCGGCACGTTTATGGGATC 955
Query 1163 AGCACTTGTGGTTATTGGTCTCTATGGCGTATTGTGGGGGAAAGACAGAGAGGTGAGTGA 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AGCACTTGTGGTTATTGGTCTCTATGGCGTATTGTGGGGGAAAGACAGAGAGGTGAGTGA 1015
Query 1223 GAAGGAAGAAGAAAGGGAGAAGGTGAAACAACAA-AACC-A-TAAAGTCAAGAGTGAAAG 1279
|||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||
Sbjct 1016 GAAGGAAGAAGAAAGGGAGAAGGTGAAACAACAACAACGTAGTAAAGGCAAGAGTGAAAG 1075
Query 1280 TAATGAAGATATTGAATCGAGATTACCGGTAGCAAGTAGTGGAAATGGTTCCACAAGGTC 1339
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1076 TAATGAAGATATTGAATCGAGATTACCGGTCGCAAGTAGTGGAAATGGTTCCACAAGGTC 1135
Query 1340 TACATCGCCTTAAAA 1354
|| ||||||||||||
Sbjct 1136 TATATCGCCTTAAAA 1150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58735157790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5