BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09390.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334218 jgi|Araly1|334218|fgenesh1_pg.C_scaffold_1000783 1696 0.0
> Ahg334218 jgi|Araly1|334218|fgenesh1_pg.C_scaffold_1000783
Length=1113
Score = 1696 bits (918), Expect = 0.0
Identities = 1050/1115 (94%), Gaps = 4/1115 (0%)
Strand=Plus/Plus
Query 62 ATGGCTACTCTCTCTCTTCACTCCCACTCTTTCCTTCTTGTTCTCCTTCCGTTTATCCTC 121
||||||||| ||||||||||||||||||||||| | ||||||||| ||||| | ||||||
Sbjct 1 ATGGCTACTGTCTCTCTTCACTCCCACTCTTTCATCCTTGTTCTCTTTCCGGTCATCCTC 60
Query 122 ATTCTCCGACAAAACTTGGCAGTGGCCGGAGGATGTCAGGTT-CCGCCGGTGATTTTTAA 180
||||||||||| |||||||| ||||||||||||||||| ||| ||||||||||| |||||
Sbjct 61 ATTCTCCGACATAACTTGGCGGTGGCCGGAGGATGTCA-GTTGCCGCCGGTGATCTTTAA 119
Query 181 CTTTGGCGATTCCAACTCCGACACGGGTGGACTCGTCGCCGGACTCGGATACAGCATTGG 240
|||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 120 CTTTGGAGATTCCAACTCCGACACGGGTGGACTCGTCGCTGGTCTCGGCTACAGCATTGG 179
Query 241 TCTTCCTAACGGTCGTTCGTTTTTCCAGAGATCCACCGGCCGATTATCCGACGGACGCCT 300
| ||||| ||||||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 TATTCCTTACGGTCGCTCATTTTTCGAGAGATCCACCGGCCGATTATCCGACGGACGCCT 239
Query 301 CGTCATCGATTTCCTTTGCCAGAGTTTGAATACAAGTCTATTGAACCCATACTTAGACTC 360
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 240 CGTCATCGATTTCCTCTGCCAGAGTTTGAATACAAGTCTACTGAACCCATACTTAGACTC 299
Query 361 ATTGGTTGGATCAAAGTTCCAAAACGGTGCCAATTTCGCAATTGTTGGATCTTCCACTCT 420
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 300 ATTGGTTGGATCAAAGTTCCAAAACGGTGCCAATTTCGCAATAGTTGGATCGTCCACTCT 359
Query 421 TCCCAGATATGTTCCTTTTGCTCTCAACATTCAGCTCATGCAGTTCCTCCATTTCAAATC 480
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 TCCCCGATATGTTCCTTTTGCTCTCAACATTCAGCTTATGCAGTTCCTCCATTTCAAATC 419
Query 481 CCGAGCACTCGAGCTTGCTTCTATTTCAGATCCTTTGAAAGAGATGATGATAGGCGAAAG 540
||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||| ||
Sbjct 420 CCGAGCACTCGAGCTTGCTTCTACTTCAGATCCTTTGAAAGAGATGCTGATAAGCGATAG 479
Query 541 TGGATTCAGAAACGCATTGTACATGATCGATATCGGACAGAATGATATTGCGGATTCATT 600
||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 CGGATTCAGAAATGCGTTGTACATGATCGATATCGGGCAGAATGATATTGCGGATTCATT 539
Query 601 CTCCAAAGGCCTTTCTTACTCCCGGGTCGTCAAGCTTATTCCAAACGTTATTTCCGAGAT 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 540 TTCCAAAGGCCTTTCTTACTCCCGTGTCGTCAAGCTTATTCCAAACGTTATTTCTGAGAT 599
Query 661 CAAAAGTGCCATAAAGATATTGTATGATGAAGGAGGGAGGAAATTTTGGGTTCACAACAC 720
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 CAAAAGTGCCATAAAGATATTGTATGATGAAGGAGGGAGGAAATTCTGGGTTCACAACAC 659
Query 721 AGGACCATTAGGTTGTCTGCCTCAGAAACTTTCAATGGTTCATAGCAAAGGTTTTGATAA 780
|||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 660 AGGACCCTTAGGTTGTCTGCCTCAGAAACTGTCAATGGTTCATAGCAAAGCTTTTGATAA 719
Query 781 GCATGGTTGTCTAGCAACTTATAACGCAGCTGCAAAACTGTTTAACGAAGGACTGGATCA 840
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 720 GCATGGTTGTCTAGCAAGTTATAACGCAGCTGCAAAACTGTTTAACGAAGGATTGGATCA 779
Query 841 TATGTGTCGGGATCTGAGGACGGAACTGAAAGAGGCCAACATTGTCTATGTCGACATTTA 900
|||||||||||| ||||||| ||| ||||||||| ||||||| |||||||||||||||||
Sbjct 780 TATGTGTCGGGAGCTGAGGATGGAGCTGAAAGAGACCAACATAGTCTATGTCGACATTTA 839
Query 901 TGCCATCAAGTACGATCTCATCGCAAACTCCAACAATTATGGCTTTGAGAAACCCTTAAT 960
|||||||||||| |||||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 840 TGCCATCAAGTATGATCTCATCGCAAACTCCTACAATTACGCCTTTGAGAAACCCTTAAT 899
Query 961 GGCATGTTGCGGATACGGAGGGCCTCCTTACAACTACAATGTGAACATAACGTGTGGGAA 1020
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 GGCGTGTTGCGGATACGGAGGGCCTCCTTACAACTATAATGTGAACATAACGTGTGGGAA 959
Query 1021 TGGTGGCTCTAAAAGTTGCGACGAAGGGTCTCGGTTTATAAGCTGGGACGGAATACACTA 1080
|||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 960 CGGTGGCTCCCAAAGTTGCGATGAAGGGTCTCGGTTTATAAGCTGGGATGGAATACACTA 1019
Query 1081 CACCGAGAC-TGCTAACGCCATTGTAGCCATGAAAGTATTGTCGATGCAACATTCTACGC 1139
||||||||| | ||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 1020 CACCGAGACCT-CTAACGCCATTATAGCCATGAAAGTATTGTCGATGCAATACTCTACGC 1078
Query 1140 CACCAACTCCGTTCCATTTCTTCTGCGGCGGCTGA 1174
||||||||||||| |||||||||||||||||||||
Sbjct 1079 CACCAACTCCGTTTCATTTCTTCTGCGGCGGCTGA 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5