BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09400.1
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919695 jgi|Araly1|919695|scaffold_100976.1 1596 0.0
> Ahg919695 jgi|Araly1|919695|scaffold_100976.1
Length=1096
Score = 1596 bits (864), Expect = 0.0
Identities = 1019/1096 (93%), Gaps = 1/1096 (0%)
Strand=Plus/Plus
Query 21 TTCCCCTTCTCACTCCATTCTCAATGAAAAACTTCAATCTTACTCACAGAATCGTTATGG 80
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TTCCCCTTCTCACTCCATTCTCAATGAAAAACTTCAATCTTACTCACAGAATAGTTATGG 60
Query 81 CGCCAATGGCGAGAATGAGATCATACGGTAACATTCCACAACCTCACGTCGCCTTGTATT 140
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 CGCCGATGGCGAGAATGAGATCATACGGTAACGTTCCACAACCTCACGTCGCCTTGTATT 120
Query 141 ATTGTCAAAGAACAACTCCGGGAGGTCTTCTCATCAGTGAAGCCACCGGAGTTTCTGAAA 200
| | ||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 121 ACTCTCAGAGAACAACTCCGGGAGGTCTTCTCATCAGCGAAGCCACCGGAGTTTCCGAAA 180
Query 201 CCGCCATGGCGTATCAAAACATGCCAGGGATATGGAGGAAAGAACAAATCGAAGCATGGA 260
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CCGCCATGGCGTATCAAAACATGCCAGGGATATGGAGGAAAGAACAAATCCAAGCATGGA 240
Query 261 AGCCCATCGTTGACGCTGTTCACTCTCACGGCGGCATCTTCTTCTGCCAGCTCTGGCACG 320
|||||||||| ||||| |||||||||||||||||| |||||||||||||||| |||||||
Sbjct 241 AGCCCATCGTCGACGCCGTTCACTCTCACGGCGGCGTCTTCTTCTGCCAGCTATGGCACG 300
Query 321 CTGGTCGCGTTTCTCATCAAGATTGTCAGCCAAATGGAGAATCTCCGGTCTCTTCAACAG 380
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||| || |
Sbjct 301 CTGGTCGCGTTTCTCATCGAGATTGTCAGCCAAATGGAGAAGCTCCGGTCTCTTCTACGG 360
Query 381 ATAAGCCATTCGCCGATGATCCATCGAATGAGTTTACACCTCCGAGAAGGTTAAGAACTG 440
|||||||||||| ||| ||||||||||||||||| || |||||||||||| |||||||||
Sbjct 361 ATAAGCCATTCGTCGAGGATCCATCGAATGAGTTCACTCCTCCGAGAAGGCTAAGAACTG 420
Query 441 ACGAAATCCCGACAATTATCAATGATTTTCGTCTCGCTGCAAGAAACGCAACCGAAGCTG 500
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 ACGAAATCCCGACAATTGTCAATGATTTTCGTCTCGCTGCAAGAAACGCAATCGAAGCTG 480
Query 501 GTTTTGATGGAGTAGAGATCCATGGAGCTCACGGGTACTTGATTGACCAGTTTATGAAAG 560
|||| || ||||| ||||||||||||||||||||||| ||| | ||||||||| ||||||
Sbjct 481 GTTTCGACGGAGTGGAGATCCATGGAGCTCACGGGTATTTGCTCGACCAGTTTGTGAAAG 540
Query 561 ACTCTGTTAACGATCGAACCGATAGTTACGGCGGATCTCTAGAGAATCGATGTAGATTCG 620
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 541 ACTCTGTTAACGATCGAACCGATAGGTACGGCGGATCTCTAGAGAATCGATGCAGATTCG 600
Query 621 CTTTACAAGTAATCGAAGCGGTTTCGAAAGAGATCGGACCTGATCGTGTCGGAATCAGAC 680
|||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 601 CTTTACAAGTTATAGAAGCGGTCTCGAACGAGATCGGACCTGATCGTGTCGGAATCAGAC 660
Query 681 TCTCACCGTTCGCTGATTACATGGAATCCGGAGATACAGATCCAAAAAGATTAGGGCTTT 740
|||| ||||||||| ||||||||||||| |||||| |||| |||||||||||||||||||
Sbjct 661 TCTCTCCGTTCGCTAATTACATGGAATCAGGAGATTCAGACCCAAAAAGATTAGGGCTTT 720
Query 741 ACATGGCCAAGTCTCTCAACAGATTCGAGATACTCTACTGCCACATGATTGAGCCTAGGA 800
||||||| || ||||| ||||||||||||||||||||||| |||||| | |||||||| |
Sbjct 721 ACATGGCAAACTCTCTGAACAGATTCGAGATACTCTACTGTCACATGGTCGAGCCTAGAA 780
Query 801 TGAAAACCGTCAGTGAGATTTTCGAGTGCAGGGAATCACTTACGCCGATGAGAAATGCGT 860
||||||| | |||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 781 TGAAAACAGCCAGTGAGATTTTCGAGTGCACGGAATCACTTACGCCGATGAGAAAGGCGT 840
Query 861 TTAATGGAACGTTCATTGTCGCCGGAGGTTATACAAGAGAAGACGGAAACAAGGCGGTGG 920
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 841 TTAATGGAGCGTTCATTGTCGCCGGAGGTTATACAAGAGAAGACGGGAACAAGGCGGTGG 900
Query 921 CAGAGGGAAGAACAGATCTTGTAGCGTACGGAAGATTGTTCTTAGCTAATCCTGATTTGC 980
|||||| ||||||||||||||| ||||||||| || ||||||| |||||||| |||||||
Sbjct 901 CAGAGGAAAGAACAGATCTTGTGGCGTACGGACGACTGTTCTTGGCTAATCCAGATTTGC 960
Query 981 CTAAAAGGTTTGAGCTCAATGCTCCGCTGAATAAGTAAGACAGACCAAGTTTCTACAGTT 1040
||| |||||| |||||| |||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 961 CTAGAAGGTTCGAGCTCGATGCCCCGCTGAATAAGTACGACAGACCAAGTTTCTATAGTT 1020
Query 1041 CTGATCCTGTTGCTGGTTACACTGATTACCCTTTTCTCGATACCACAGATCAATAAGACA 1100
|||||| || | |||||| |||||||||||||||||||| ||||||||||||||| ||
Sbjct 1021 CTGATCATGCCGTTGGTTATACTGATTACCCTTTTCTCGACACCACAGATCAATAAAACC 1080
Query 1101 AGAGTCTTGTTCAATC 1116
| |||||||||||||
Sbjct 1081 -GTGTCTTGTTCAATC 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44108214969
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5