BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09415.1
Length=655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471033 jgi|Araly1|471033|fgenesh2_kg.1__987__AT1G09415.1 957 0.0
> Ahg471033 jgi|Araly1|471033|fgenesh2_kg.1__987__AT1G09415.1
Length=651
Score = 957 bits (518), Expect = 0.0
Identities = 615/660 (93%), Gaps = 14/660 (2%)
Strand=Plus/Plus
Query 1 ATGTTGTTAGTCTTCCCACTAGAGGCAATAATTATATCTTCTCCACCAATTCCTCCAGAA 60
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1 ATGTTGTTAGTCTTCCCACTAGAGGCAATAATTATATCTCCTCCACCAATTCCTGCAGAA 60
Query 61 AATTCTTCCAGATGTATCATGTGTTGATGATCAAAGTAGGATGAAAATGATGTAACTAAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 61 AATTCTTCCAGATGTATCATGTGTTGATGATCAAAGTAGGATGAAAATGATGTAGCTAGA 120
Query 121 GAGAAACATTTTCATAGGGGAAGGAAGA-GAGAGCGGTTCAATGGACagagacagaaaga 179
|||||||||||||| |||| |||||| | ||||| || |||||||| ||||||| |||||
Sbjct 121 GAGAAACATTTTCAAAGGGAAAGGAA-ACGAGAGTGGCTCAATGGATAGAGACAAAAAGA 179
Query 180 gggtgaaaatggagaaggaagatgacgaagaagaaaagatggagaagTTGTACACAGTGC 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGGTGAAAATGGATAAGGAAGATGACGAAGAAGAAAAGATGGAGAAGTTGTACACAGTGC 239
Query 240 TTAAAAACGCAAGGGAAATGCGGAAATATGTCAACAGCTCCATGGagaagaagagacagg 299
|||||||||||||||||||||||||||| || | |||||||||||||| |||||||||||
Sbjct 240 TTAAAAACGCAAGGGAAATGCGGAAATACGTTATCAGCTCCATGGAGACGAAGAGACAGG 299
Query 300 aagaagaagaaagaGCAAGGGTTCGTAGATTCCCTTCGTTTCAGCCAGAAGATTTCATTT 359
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAGAAGAAGAAAGAGCAAGGATTCGTAGATTCCCTTCGTTTCAGCCAGAAGATTTCATTT 359
Query 360 TCATGAATAAAGCAGAGGCCAACAACATTGAAAAAGCAGCTAATGAGAGCTCTTCAGCAT 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCATGAATAAAGCAGAGACCAACAACATTGAAAAAGCAGCTAATGAGAGCTCTTCAGCAT 419
Query 420 CCAACGAGTATGATGGCTCTAAGGAAAAGCAAGAAGGATCTGAGACTAACGTTTGTTTAG 479
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 420 CCAACGAGTATGATGGCTCTAAGGAAAAGCAAGACGGATCTGAGACTAACATTTGTTTAG 479
Query 480 ACTTGAATCTTTCTCTGTAGCATACATACATACAAGAGACAAAGAGCTCTTCAGTTTCTG 539
|||||||||||||||||||| || ||| | |||||||||||||||||||||||||
Sbjct 480 ACTTGAATCTTTCTCTGTAG--TA--TACG-A---GAGACAAAGAGCTCTTCAGTTTCTG 531
Query 540 TATAAGCAACAAAGAATGTTAGTAACTACGTA----CCAAAAACAAATGTGTCATGGAAT 595
|| |||||||||| |||||||||||||| ||| ||||||||||||||| |||| |||
Sbjct 532 TACAAGCAACAAATAATGTTAGTAACTATGTATGTACCAAAAACAAATGTGACATGTAAT 591
Query 596 TCTAGTTTTGCTTGAAGATTGTTCATCACTTCTTATTAACCATATTGAAGAAAATGCTAC 655
|||||| ||||||||||| || |||||||||||||||||||| || |||| |||||||||
Sbjct 592 TCTAGTATTGCTTGAAGAGTGATCATCACTTCTTATTAACCAAATAGAAGGAAATGCTAC 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24017437710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5