BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09430.1
Length=1838
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471036 jgi|Araly1|471036|fgenesh2_kg.1__990__AT1G09430.1 2350 0.0
> Ahg471036 jgi|Araly1|471036|fgenesh2_kg.1__990__AT1G09430.1
Length=1711
Score = 2350 bits (1272), Expect = 0.0
Identities = 1470/1563 (94%), Gaps = 23/1563 (1%)
Strand=Plus/Plus
Query 111 TGTTGAGGACGATCACTGTTTGTAATTCGATGGCGAGGAAGAAGATCAGAGAATATGACT 170
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 81 TGTTGAGGACGATCACTGTTTGTAATTCGATGGCGAGGAAGAAGATCAGAGAGTATGACT 140
Query 171 CCAAGAGACTTCTCAAGGAGCATTTGAAGCGTCTTGCTAATATTGACCTGCAGATTCGCT 230
||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 141 CCAAGAGACTTCTCAAGGAACATTTGAAGCGTCTCGCTAACATTGACCTGCAGATTCGCT 200
Query 231 CTGCTCAGGTGACAGAATCTACGGATTTCACTGAGTTAACCAACCAGGAGTCATGGCTAT 290
|||||||||||||||||||||| |||||||||||||| ||||||||| ||| ||||||||
Sbjct 201 CTGCTCAGGTGACAGAATCTACTGATTTCACTGAGTTGACCAACCAGCAGTTATGGCTAT 260
Query 291 CGTCCACAAAGCTAGTTGTGAAACCGGATATGCTATTTGGGAAACGCGGGAAAAGTGGTT 350
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 261 CGTCCACAAAGCTAGTTGTGAAACCTGATATGCTATTTGGGAAACGCGGTAAAAGTGGCT 320
Query 351 TGGTAGCTCTAAAGCTGGATCTTGCTGAAGTTGCAGACTTTGTCAAAGCCCGCCTCGGCA 410
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 321 TGGTAGCTCTGAAGCTGGATCTTGCTGAAGTTGCAGAGTTTGTCAAAGCCCGCCTCGGTA 380
Query 411 CTGAGGTCGAGATGGAGGGATGTAAAGCACCTATCACTACATTCATTGTGGAGCCTTTTG 470
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 381 CTGAGGTTGAGATGGAGGGATGTAAAGCTCCTATCACTACATTCATTGTGGAGCCTTTTG 440
Query 471 TGCCTCATGATCAAGAATACTACCTCTCTATAGTATCTGATAGACTTGGATGCACTATAA 530
||||||||||||||||||||||||| |||||| |||||||||| ||||| ||||||||||
Sbjct 441 TGCCTCATGATCAAGAATACTACCTTTCTATACTATCTGATAGGCTTGGCTGCACTATAA 500
Query 531 GCTTCTCTGAATGTGGTGGCATTGAAATAGAAGAGAATTGGGACAAAGTGAAGACTATAT 590
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 501 GCTTCTCTGAATGTGGTGGCATTGAAATTGAAGAGAACTGGGACAAAGTGAAGACTATAT 560
Query 591 TTCTTCCTGCGGAAAAGTCGATGACGCTAGAAGTATGTGCTCCATTAATAGCAACTCTTC 650
||||||||||||| ||||| |||| ||||||||||||||||||||| |||||||||||||
Sbjct 561 TTCTTCCTGCGGAGAAGTCAATGATGCTAGAAGTATGTGCTCCATTGATAGCAACTCTTC 620
Query 651 CTCTTGAGGTTCGAGCTAAAATCGGCAACTTCATAATGGGTGCCTTTGCTGTATTTCAAG 710
|||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 621 CTCTTGAGGTTCGAGCTAAAATTGGTAACTTCATAATGGGTGCGTTTGCTGTATTTCAAG 680
Query 711 ATTTGGATTTCAGTTTTATGGAGATGAATCCTTTTACACTAGTCGATGGAGAACCATTCC 770
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 681 ATTTGGATTTCAGTTTTATGGAGATGAATCCTTTTACACTAGTCGATGGAGAGCCATACC 740
Query 771 CTCTGGATATGAGAGGAGAATTAGATGACACTGCTGCCTTCAAGAATTTCAACAAGTGGG 830
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTCTGGATATGAGGGGAGAGTTAGATGACACTGCTGCCTTCAAGAATTTCAACAAGTGGG 800
Query 831 GAGACATTGAATTTCCTCTGCCATTTGGAAGGGTCCTCAGTTCTACAGAGAACTTCATCC 890
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 801 GAGACATTGAATTTCCTCTACCATTTGGAAGGGTCCTCAGTTCGACGGAGAACTTCATCC 860
Query 891 ATGGTTTAGATGAGAAGACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCC 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 ATGGTTTAGATGAGAAGACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCC 920
Query 951 GCATTTGGACGATGGTAGCTGGAGGTGGTGCTAGCGTCATATATGCTGATACAGTTGGGG 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 GCATTTGGACGATGGTAGCTGGAGGTGGTGCTAGCGTCATATATGCTGATACAGTTGGGG 980
Query 1011 ATTTAGGTTATGCATCAGAGCTTGGAAACTACGCAGAGTATAGTGGAGCACCTAATGAGG 1070
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 981 ATTTAGGTTATGCATCAGAGCTCGGGAACTACGCAGAGTATAGTGGAGCACCTAATGAGG 1040
Query 1071 AAGAGGTGTTACAATATGCAAGAGTTGTCATTGATTGTGCCACTACTGATCCTGACGGGC 1130
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1041 AAGAGGTGTTACAATATGCAAGAGTTGTCATTGATTGTGCCACTGCTGATCCTGACGGGC 1100
Query 1131 GTAAACGAGCTCTTCTAATTGGAGGAGGCATTGCCAATTTCACTGATGTGGCAGCTACTT 1190
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1101 GTAAACGAGCTCTTCTAATTGGAGGAGGCATTGCCAACTTCACCGATGTGGCAGCTACTT 1160
Query 1191 TCAACGGTATCATTCGAGCGCTAAGAGAAAAGGAAACAAGATTGAAAGCATCAAGAATGC 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 TCAACGGTATCATTCGAGCGCTAAGAGAAAAGGAAACAAGATTGAAAGCATCAAGAATGC 1220
Query 1251 ACATTTACGTAAGGAGAGGTGGACCAAATTACCAGACTGGTTTGGCTAGAATGCGAGCTT 1310
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1221 ACATTTATGTAAGGAGAGGTGGACCAAATTACCAGACTGGTTTGGCCAGAATGCGAGCTC 1280
Query 1311 TAGGAGAGGAACTTGGTGTCCCTCTAGAGGTATATGGTCCAGAGGCAACAATGACGGGAA 1370
| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1281 TGGGAGAGGAACTTGGTGTCCCTCTAGAGGTATATGGTCCAGAAGCAACGATGACGGGAA 1340
Query 1371 TATGCAAACGAGCCATTGACTGCATCATGTTGCCTGATGCATAACCTACCCAAACCTTTT 1430
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1341 TATGCAAACGAGCCATTGACTGCATCATGTTACCTGATGCATAACCAACCCAAACCTTTG 1400
Query 1431 ATCTCTTCTTCAGTTTGAAAGCAGAACAAAAGCTTTGGAGCTGGACGAATGAGTGAGTGT 1490
|||||||||||||||||||||||||| |||||||||| ||||||| | |||||||||||
Sbjct 1401 ATCTCTTCTTCAGTTTGAAAGCAGAATAAAAGCTTTGTAGCTGGATGTGTGAGTGAGTGT 1460
Query 1491 AAAATGAGTCATGTCCTTCATCTCTCTCTTTCCACATAAGAAAATGAAAATCTCTTTAAA 1550
||| || ||| |||||||||||| || |||| |||||||||||||| |||||||
Sbjct 1461 GCGGTGATTCCTGTTCTTCATCTCTCT-TT-CCACGTAAGAAAATGAAAAGCTCTTTA-- 1516
Query 1551 ACtttttttCCACTGGGTGTGAATTTGAAAACTGTATCATTGTGT-GTAAGCGTAATTGT 1609
| || ||||||||||| ||||||||||||| ||||| ||||||||
Sbjct 1517 --------------G--TGAGAATTTGAAAATTGTATCATTGTGTTGTAAGTGTAATTGT 1560
Query 1610 AATCAGACGGTCAAAATCCTTATTTTGAAATGTACAATAAGACTTCAAAAGTT-AATGTT 1668
||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1561 AATCAAACGCTCAAAATCCTTATTT-GAAATGTACAATAAGACTTCAAAAGTTTAATGTC 1619
Query 1669 GCT 1671
|||
Sbjct 1620 GCT 1622
Score = 134 bits (72), Expect = 3e-30
Identities = 88/95 (93%), Gaps = 3/95 (3%)
Strand=Plus/Plus
Query 1701 TCGCTCTACACACCAATCTATTATACTAATGTAAAG-GTTTGAAGACAAATCCAATTCC- 1758
||||| |||||||||||||||||||||||||||| | |||| |||||||||||||||||
Sbjct 1618 TCGCTATACACACCAATCTATTATACTAATGTAA-GTGTTTCAAGACAAATCCAATTCCC 1676
Query 1759 ATATACAAACATGTCTATGTATACAATATATGTCA 1793
||||||||||||||||||||||| ||||||| |||
Sbjct 1677 ATATACAAACATGTCTATGTATATAATATATATCA 1711
Score = 121 bits (65), Expect = 2e-26
Identities = 76/81 (94%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 1 TTGAGTTGGTGAGATCATCTTCTTCTCAACTTCATCGATCTTATCGTCTCGAAAATTGTC 60
||| |||| |||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1 TTGTGTTGATGAGATCATCTTCTGCTCAACTTCATCGATCTTATCGTCTCGAAAGTTGTC 60
Query 61 ACCTTTTCTTCTCAGCTACTT 81
||||||| |||||||||||||
Sbjct 61 ACCTTTT-TTCTCAGCTACTT 80
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69019523940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5