BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09440.1
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311987 jgi|Araly1|311987|fgenesh1_pm.C_scaffold_1000767 2108 0.0
> Ahg311987 jgi|Araly1|311987|fgenesh1_pm.C_scaffold_1000767
Length=1446
Score = 2108 bits (1141), Expect = 0.0
Identities = 1257/1314 (96%), Gaps = 3/1314 (0%)
Strand=Plus/Plus
Query 193 ATGGCTGGACTTAAGATCTGGCAAGCCATCTTTATCACCATTGCACTGATCATCATTGTC 252
||| |||||||||||||||||||||||||| ||||| ||||||| ||| ||| |||||||
Sbjct 1 ATGTCTGGACTTAAGATCTGGCAAGCCATCGTTATCGCCATTGCGCTGTTCACCATTGTC 60
Query 253 GTACTCTCTGTTCTTTCATTTTGTCTCATTTGGAAAAAGAAATCAAGAAGATCCAAAACC 312
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATACTCTCTGTTCTTTCATTTTGTCTCATTTGGAAAAAGAAATCAAGAAGATCCAAAACC 120
Query 313 TTAAGTCTTCCCATCATACAAACCCCTGTGGTGTCAAAGGAGATCAAGGAAGTCAGGATC 372
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 TTAAGTCTTCCCATCATCCAAACCCCTGTGGTGTCAAAGGAGATCAAGGAAGTCAGAATT 180
Query 373 GAGCATGTTGTCTCAACGAGTAGTAACTTCGATCCTCAGGATGAAAACAACAATGAATCT 432
||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 181 GAGCA---TGTCTCAACGAGTAGTAACTTCGACCCTCAGGACGAAAACAACAATGAATCT 237
Query 433 GACAAATTCTTGCTTAATTTGGAAATGGAGAAGAACAGAGAGAATGGTTTGAGTAGTAGC 492
||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 238 GACAAATTCTTGCTTAATTTGGATATGGAGAAGAAGACAGAGAATGGTTTGAGTAGTAGC 297
Query 493 CGGTCTGGTTCAGGCAAAGAAGGTTATTTATGTGTTGCAAACCGGTCTACTTCATCATTG 552
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 298 CGGTCTGGTTCAGGCAAAGAAGGTTATCTATGTGTTGCAAACCGGTCTTCTTCATCATTG 357
Query 553 TATGAGATGGCTACACCATCACCATCACCTCTTTCTGGTTTACCTGAGTCACACCTTGGA 612
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 358 TATGAGATGGCTACACCATCACCATCACCTCTTTCCGGTTTACCTGAGTCACATCTTGGA 417
Query 613 TGGGGTCATTGGTTTACTCTGAGAGATCTTGAGATAGCAACAAACAGATTCTCAAAGGAA 672
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 418 TGGGGTCATTGGTTTACTCTGAGAGATCTTGAAATAGCAACAAACAGATTCTCAAAGGAA 477
Query 673 AATGTGATTGGTGAAGGAGGCTATGGAGTTGTTTACCGAGGCGAGTTGGTCAATGGGAGT 732
|||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||| |
Sbjct 478 AATGTGATTGGTGAAGGAGGATATGGAATTGTATACCGAGGAGAGTTGGTCAATGGGTCT 537
Query 733 CTTGTTGCCGTGAAAAAGATCCTAAACCACTTGGGACAAGCAGAGAAAGAGTTTAGAGTA 792
| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 538 CATGTCGCCGTGAAAAAGATCCTGAACCACTTGGGACAAGCTGAGAAAGAGTTTAGAGTA 597
Query 793 GAGGTAGATGCTATAGGTCATGTGCGTCACAAGAACTTGGTACGTCTTCTAGGATACTGC 852
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 598 GAGGTTGATGCTATTGGTCATGTGCGTCACAAGAACTTGGTACGGCTTCTAGGATACTGC 657
Query 853 ATTGAAGGCACAAACAGGATATTGGTTTATGAGTATATGAACAATGGGAACCTTGAAGAA 912
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 658 ATTGAAGGCACAAACAGGATATTGGTTTATGAGTATATGAACAATGGGAACCTCGAAGAA 717
Query 913 TGGCTTCACGGAGCAATGAAACATCATGGATATCTAACTTGGGAAGCTCGAATGAAAGTT 972
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 718 TGGCTTCACGGAGCAATGAAACATCACGGATATCTAACTTGGGAAGCTCGAATGAAAATT 777
Query 973 CTCACTGGAACATCCAAGGCTCTTGCATATCTACACGAGGCAATCGAACCAAAAGTGGTG 1032
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 778 CTCACTGGCACATCCAAGGCTCTCGCATATCTACACGAGGCAATCGAACCAAAAGTAGTG 837
Query 1033 CATAGAGACATCAAGTCGAGCAACATCTTGATCGATGATAGATTCAATGCAAAGATTTCT 1092
||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 838 CATAGAGACATCAAGTCAAGCAATATCTTGATCGATGATAGATTCAACGCAAAGATTTCG 897
Query 1093 GATTTTGGCCTTGCCAAGTTACTTGGAGATGGGAAAAGCCATGTGACTACTAGAGTCATG 1152
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 898 GATTTTGGCCTTGCCAAGTTACTTGGAGATGGGAAAAGCCATGTGACTACTCGAGTCATG 957
Query 1153 GGAACATTTGGGTATGTTGCTCCTGAGTATGCGAATACCGGACTTTTGAATGAAAAGAGT 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GGAACATTTGGGTATGTTGCTCCTGAGTATGCGAATACCGGACTTTTGAATGAAAAGAGT 1017
Query 1213 GATGTGTACAGCTTTGGTGTCTTGGTCTTAGAAGCAATAACCGGAAGAGATCCTGTGGAT 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GATGTGTACAGCTTTGGTGTCTTGGTCTTAGAAGCAATAACCGGAAGAGATCCTGTGGAT 1077
Query 1273 TACGCGCGGCCTGCTAATGAGGTGAATTTGGTTGAGTGGTTGAAGATGATGGTAGGATCT 1332
|||||||| |||||||||||||||||| | |||||||||||||| |||||||||||||||
Sbjct 1078 TACGCGCGTCCTGCTAATGAGGTGAATCTAGTTGAGTGGTTGAAAATGATGGTAGGATCT 1137
Query 1333 AAGAGATTAGAAGAAGTCATTGATCCAAACATAGCAGTTAGGCCAGCGACTAGAGCACTG 1392
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1138 AAGAGATTAGAAGAAGTCATTGATCCAAACATAGCGGTTAGGCCAGCGACTAGAGCACTG 1197
Query 1393 AAACGAGTACTTCTTACAGCACTTAGATGCATTGATCCTGATTCTGAAAAGAGACCTAAA 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AAACGAGTACTTCTTACAGCACTTAGATGCATTGATCCTGATTCTGAAAAGAGACCTAAA 1257
Query 1453 ATGAGTCAAGTTGTGCGTATGCTGGAGTCTGAGGAATATCCTGTACCAAGAGAG 1506
||||| |||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 1258 ATGAGCCAAGTTGTTCGTATGCTCGAGTCTGAGGAATATCCCATACCAAGAGAG 1311
Score = 143 bits (77), Expect = 4e-33
Identities = 85/89 (96%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 1505 AGGAGCGGAGAGTGCGCAGAACGCAAGAGGAAAACTCGGATACCGATAGAAGCAGACCGG 1564
|||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||
Sbjct 1358 AGGAGCGGAGAGTGCGCAGAACTCAAGAGGAAAACTCAGATACCGATAGAAGCACACCGG 1417
Query 1565 TTTCAAGATCACAGAGCAAGAGACTGTAA 1593
|||||||||||||||||||||||| ||||
Sbjct 1418 TTTCAAGATCACAGAGCAAGAGACAGTAA 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59687413915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5