BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G09440.1 Length=1593 Score E Sequences producing significant alignments: (Bits) Value Ahg311987 jgi|Araly1|311987|fgenesh1_pm.C_scaffold_1000767 2108 0.0 > Ahg311987 jgi|Araly1|311987|fgenesh1_pm.C_scaffold_1000767 Length=1446 Score = 2108 bits (1141), Expect = 0.0 Identities = 1257/1314 (96%), Gaps = 3/1314 (0%) Strand=Plus/Plus Query 193 ATGGCTGGACTTAAGATCTGGCAAGCCATCTTTATCACCATTGCACTGATCATCATTGTC 252 ||| |||||||||||||||||||||||||| ||||| ||||||| ||| ||| ||||||| Sbjct 1 ATGTCTGGACTTAAGATCTGGCAAGCCATCGTTATCGCCATTGCGCTGTTCACCATTGTC 60 Query 253 GTACTCTCTGTTCTTTCATTTTGTCTCATTTGGAAAAAGAAATCAAGAAGATCCAAAACC 312 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATACTCTCTGTTCTTTCATTTTGTCTCATTTGGAAAAAGAAATCAAGAAGATCCAAAACC 120 Query 313 TTAAGTCTTCCCATCATACAAACCCCTGTGGTGTCAAAGGAGATCAAGGAAGTCAGGATC 372 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 121 TTAAGTCTTCCCATCATCCAAACCCCTGTGGTGTCAAAGGAGATCAAGGAAGTCAGAATT 180 Query 373 GAGCATGTTGTCTCAACGAGTAGTAACTTCGATCCTCAGGATGAAAACAACAATGAATCT 432 ||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 181 GAGCA---TGTCTCAACGAGTAGTAACTTCGACCCTCAGGACGAAAACAACAATGAATCT 237 Query 433 GACAAATTCTTGCTTAATTTGGAAATGGAGAAGAACAGAGAGAATGGTTTGAGTAGTAGC 492 ||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| Sbjct 238 GACAAATTCTTGCTTAATTTGGATATGGAGAAGAAGACAGAGAATGGTTTGAGTAGTAGC 297 Query 493 CGGTCTGGTTCAGGCAAAGAAGGTTATTTATGTGTTGCAAACCGGTCTACTTCATCATTG 552 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 298 CGGTCTGGTTCAGGCAAAGAAGGTTATCTATGTGTTGCAAACCGGTCTTCTTCATCATTG 357 Query 553 TATGAGATGGCTACACCATCACCATCACCTCTTTCTGGTTTACCTGAGTCACACCTTGGA 612 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 358 TATGAGATGGCTACACCATCACCATCACCTCTTTCCGGTTTACCTGAGTCACATCTTGGA 417 Query 613 TGGGGTCATTGGTTTACTCTGAGAGATCTTGAGATAGCAACAAACAGATTCTCAAAGGAA 672 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 418 TGGGGTCATTGGTTTACTCTGAGAGATCTTGAAATAGCAACAAACAGATTCTCAAAGGAA 477 Query 673 AATGTGATTGGTGAAGGAGGCTATGGAGTTGTTTACCGAGGCGAGTTGGTCAATGGGAGT 732 |||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||| | Sbjct 478 AATGTGATTGGTGAAGGAGGATATGGAATTGTATACCGAGGAGAGTTGGTCAATGGGTCT 537 Query 733 CTTGTTGCCGTGAAAAAGATCCTAAACCACTTGGGACAAGCAGAGAAAGAGTTTAGAGTA 792 | ||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 538 CATGTCGCCGTGAAAAAGATCCTGAACCACTTGGGACAAGCTGAGAAAGAGTTTAGAGTA 597 Query 793 GAGGTAGATGCTATAGGTCATGTGCGTCACAAGAACTTGGTACGTCTTCTAGGATACTGC 852 ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 598 GAGGTTGATGCTATTGGTCATGTGCGTCACAAGAACTTGGTACGGCTTCTAGGATACTGC 657 Query 853 ATTGAAGGCACAAACAGGATATTGGTTTATGAGTATATGAACAATGGGAACCTTGAAGAA 912 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 658 ATTGAAGGCACAAACAGGATATTGGTTTATGAGTATATGAACAATGGGAACCTCGAAGAA 717 Query 913 TGGCTTCACGGAGCAATGAAACATCATGGATATCTAACTTGGGAAGCTCGAATGAAAGTT 972 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 718 TGGCTTCACGGAGCAATGAAACATCACGGATATCTAACTTGGGAAGCTCGAATGAAAATT 777 Query 973 CTCACTGGAACATCCAAGGCTCTTGCATATCTACACGAGGCAATCGAACCAAAAGTGGTG 1032 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 778 CTCACTGGCACATCCAAGGCTCTCGCATATCTACACGAGGCAATCGAACCAAAAGTAGTG 837 Query 1033 CATAGAGACATCAAGTCGAGCAACATCTTGATCGATGATAGATTCAATGCAAAGATTTCT 1092 ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| Sbjct 838 CATAGAGACATCAAGTCAAGCAATATCTTGATCGATGATAGATTCAACGCAAAGATTTCG 897 Query 1093 GATTTTGGCCTTGCCAAGTTACTTGGAGATGGGAAAAGCCATGTGACTACTAGAGTCATG 1152 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 898 GATTTTGGCCTTGCCAAGTTACTTGGAGATGGGAAAAGCCATGTGACTACTCGAGTCATG 957 Query 1153 GGAACATTTGGGTATGTTGCTCCTGAGTATGCGAATACCGGACTTTTGAATGAAAAGAGT 1212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 GGAACATTTGGGTATGTTGCTCCTGAGTATGCGAATACCGGACTTTTGAATGAAAAGAGT 1017 Query 1213 GATGTGTACAGCTTTGGTGTCTTGGTCTTAGAAGCAATAACCGGAAGAGATCCTGTGGAT 1272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 GATGTGTACAGCTTTGGTGTCTTGGTCTTAGAAGCAATAACCGGAAGAGATCCTGTGGAT 1077 Query 1273 TACGCGCGGCCTGCTAATGAGGTGAATTTGGTTGAGTGGTTGAAGATGATGGTAGGATCT 1332 |||||||| |||||||||||||||||| | |||||||||||||| ||||||||||||||| Sbjct 1078 TACGCGCGTCCTGCTAATGAGGTGAATCTAGTTGAGTGGTTGAAAATGATGGTAGGATCT 1137 Query 1333 AAGAGATTAGAAGAAGTCATTGATCCAAACATAGCAGTTAGGCCAGCGACTAGAGCACTG 1392 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1138 AAGAGATTAGAAGAAGTCATTGATCCAAACATAGCGGTTAGGCCAGCGACTAGAGCACTG 1197 Query 1393 AAACGAGTACTTCTTACAGCACTTAGATGCATTGATCCTGATTCTGAAAAGAGACCTAAA 1452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 AAACGAGTACTTCTTACAGCACTTAGATGCATTGATCCTGATTCTGAAAAGAGACCTAAA 1257 Query 1453 ATGAGTCAAGTTGTGCGTATGCTGGAGTCTGAGGAATATCCTGTACCAAGAGAG 1506 ||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| Sbjct 1258 ATGAGCCAAGTTGTTCGTATGCTCGAGTCTGAGGAATATCCCATACCAAGAGAG 1311 Score = 143 bits (77), Expect = 4e-33 Identities = 85/89 (96%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 1505 AGGAGCGGAGAGTGCGCAGAACGCAAGAGGAAAACTCGGATACCGATAGAAGCAGACCGG 1564 |||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| Sbjct 1358 AGGAGCGGAGAGTGCGCAGAACTCAAGAGGAAAACTCAGATACCGATAGAAGCACACCGG 1417 Query 1565 TTTCAAGATCACAGAGCAAGAGACTGTAA 1593 |||||||||||||||||||||||| |||| Sbjct 1418 TTTCAAGATCACAGAGCAAGAGACAGTAA 1446 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59687413915 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5