BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09450.1
Length=2096
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311988 jgi|Araly1|311988|fgenesh1_pm.C_scaffold_1000768 1823 0.0
> Ahg311988 jgi|Araly1|311988|fgenesh1_pm.C_scaffold_1000768
Length=1758
Score = 1823 bits (987), Expect = 0.0
Identities = 1120/1183 (95%), Gaps = 14/1183 (1%)
Strand=Plus/Plus
Query 664 ACTTCAGTTTTCCGGCTCATCCCGAGCTGCGATGAGAACTTGGCTGCCGAAGATGTGCCT 723
||||||||||||||||||||||| ||||| ||||| | |||||||||||| |||||||||
Sbjct 586 ACTTCAGTTTTCCGGCTCATCCCCAGCTGTGATGACAGCTTGGCTGCCGAGGATGTGCCT 645
Query 724 GTTAGAAAAATCAAGATGGAATCAATCGACCTTGAAGATGAGCTGAAGCGACTGTCTTTG 783
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 646 GTTAGAAAAATCAAGATGGAAGCAATCGACCTTGAAGATGAGCTGAAGCGGCTGTCTTTG 705
Query 784 ACATCTGATCTAATCCCCACTCATCAAGATTTTGATCAGCCAATTCTTGATCTATTGTCC 843
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 706 ACATCTGATCTAATCCCCACTCATCAAGATTTTGATCAGCCATTTCTTGATCTATTGTCC 765
Query 844 GCCTGTGGACAGATGCGACCATCAAACTTCATTGAAGCATTCTCTAAATTCTGTGAACCT 903
||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 766 GCCTGTGGACAGACGCAACCATCAAACTTCATGGAAGCATTCTCTAAATTCTGTGAACCT 825
Query 904 GAAAGCATTGTCAAGATTGGTGAAGGTACATATGGGGAGGCTTTTCGGGCTGGTTCTAGT 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GAAAGCATTGTCAAGATTGGTGAAGGTACATATGGGGAGGCTTTTCGGGCTGGTTCTAGT 885
Query 964 GTCTGTAAAATAGTTCCAATTGATGGAGACTTCAGGGTTAATGGGGAAGTACAGAAGAGA 1023
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 886 GTCTGTAAAATAGTTCCAATTGATGGAGACGTCAGGGTTAATGGGGAAGTACAGAAGAGA 945
Query 1024 GCTGACGAACTACTTGAGGAAGTGATACTCTCATGGACTCTTAATCAACTAAGAGAATGT 1083
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 946 GCTGACGAACTACACGAGGAAGTGATACTCTCATGGACTCTTAATAAACTAAGAGAATGT 1005
Query 1084 GAGACT-ACAGCTCAGAATT-TGTGCCCGACGTACATAAAAACTCAAGATATAAAATTAT 1141
|||||| | |||||| |||| | ||||| |||| |||||||||||||||||||||| |||
Sbjct 1006 GAGACTGA-AGCTCAAAATTCT-TGCCCAACGTTCATAAAAACTCAAGATATAAAAGTAT 1063
Query 1142 GTCAAGGTCCCTATGACCCTATACTGATAAAAGCATGGGAAGAATGGGATGCAAAACATG 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 GTCAAGGTCCCTATGACCCTATACTGATAAAAGCATGGGAAGAATGGGATGCAAAACATG 1123
Query 1202 GGTCTGAGAATGATCACCCAGATTTTCCGGAGAAACAATGTTATGTCATGTTTGTTCTGG 1261
| ||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||
Sbjct 1124 GCTCTGAGAATGATCACCCAGATTTCCCGGAAAAACAACGTTATGTCATGTTTGTTCTGG 1183
Query 1262 AACATGGTGGCAAAGACCTTGAAAGCTTTGTTCTTTTGAACTTTGATGAAGCAAGGAGCT 1321
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1184 AACATGGTGGCAAAGACCTTGAAAGCTTTGTTCTTTTGAACTTTGGTGAAGCCCGGAGCT 1243
Query 1322 TACTGGTTCAGGCCACCGCTGGCCTGGCTGTTGCTGAAGCTGCTTTTGAGTTCGAGCACA 1381
|| |||| || | ||||||||||||||||| ||||||| ||||||||| |||||||
Sbjct 1244 TATTGGT-CACG-----GCTGGCCTGGCTGTTGCCGAAGCTGGTTTTGAGTTTGAGCACA 1297
Query 1382 GGGACCTGCACTGGGGAAACATTCTTCTCAGTCGTAATAACTCG-GATACTCTGCCTTTT 1440
| ||||||||||||||||||||||| || ||||||||||||||| | |||||||||||||
Sbjct 1298 GAGACCTGCACTGGGGAAACATTCTACTGAGTCGTAATAACTCGAG-TACTCTGCCTTTT 1356
Query 1441 ATTCTTGA-GGGAAAACAAGTTTGCATCAAAACTTTCGGAGTACAGATATCCATAATCGA 1499
||||| || |||||| ||||||| |||||||||||| ||||| ||| |||||||||||||
Sbjct 1357 ATTCTCGAAGGGAAA-CAAGTTTTCATCAAAACTTTTGGAGTGCAGGTATCCATAATCGA 1415
Query 1500 CTTTACTCTTTCAAGAATCAATACAGGTGAAAAGATACTCTTTCTGGACCTTACTTCTGA 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1416 CTTTACTCTTTCAAGAATCAATACAGGTGAAAAGATACTCTTTCTGGACCTTACTTGTGA 1475
Query 1560 TCCATACCTTTTCAAAGGACCAAAAGGAGATAAACAATCGGAAACTTACCGAAAAATGAA 1619
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1476 TCCATACCTTTTCAAAGGACCAAAAGGAGATAAACAATCAGAAACTTACAGAAAAATGAA 1535
Query 1620 GGCGGTTACTGAAGATTACTGGGAAGGAAGCTTTGCTCGAACAAATGTTCTCTGGCTAAT 1679
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1536 GGCAGTTACTGAAGATTACTGGGAAGGAAGCTTTGCTCGAACAAATGTTCTCTGGCTAAT 1595
Query 1680 TTATCTCGTGGATATCTTACTTACCAAGAAGTCATTTGAACGGTCTTCAAAACACGAAAG 1739
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1596 TTATCTCGTGGATATCTTACTTACCAAGAAGTCATTTGAACGGTCTTCAAAAGACGAAAG 1655
Query 1740 AGAACTACGATCACTAAAGAAGCGAATGGAGAAGTATGAATCAGCTAAAGAGGCTGTGTC 1799
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1656 AGAACTACGGTCACTGAAGAAGCGGATGGAGAAGTATGAATCAGCTAAAGAGGCTGTTTT 1715
Query 1800 AGATCCTTTCTTCTCAGATATGTTGATGGACCAAATATCATGA 1842
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1716 AGATCCTTTCTTCTCAGATATGTTGATGGACCAAATATCATGA 1758
Score = 915 bits (495), Expect = 0.0
Identities = 555/585 (95%), Gaps = 0/585 (0%)
Strand=Plus/Plus
Query 43 ATGGGGCAGAGAGTTGATCTATGGTCTGAGGTCATTAAATCTGAGGAAGAAGACGGAGAT 102
||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1 ATGGGACAGAGAGTTGATCTTTGGTCTGAGGTCATGAAATCCGAGGAAGAAGACGGAGAT 60
Query 103 ATACCTAAGATTGAAGCCGTTTTTCAGAGAAGAAAGAAGCCTGATAAATCCTCAGAAGCT 162
||||| |||||||||||||||| ||||||||||||||| ||||| |||||||| ||| ||
Sbjct 61 ATACCCAAGATTGAAGCCGTTTATCAGAGAAGAAAGAAACCTGAGAAATCCTCCGAACCT 120
Query 163 GTCAATTTTGGCTGGTTGGTGAAAGGGGCTCGTACTAGTTCGGTCAATGGACCCAAGAGA 222
|| ||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GTAAATTTAGGATGGTTGGTCAAAGGGGCTCGTACTAGTTCGGTCAATGGACCTAAGAGA 180
Query 223 GATAGCTGGGCTCGTTCCCTTTCCACCAGAGGGAGAGAGAGTATTGCAGTGCGCGCTTAT 282
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATAGCTGGGCTCGTTCACTTTCCACCAGAGGGAGAGAGAGTATTGCAGTGCGCGCTTAT 240
Query 283 GTCAACAATCAGCCTCAGAAGAAGGCAGCCGGGAGAAAAAAGCCCCCTATTCCAAAGGGA 342
||||||||||||||||| |||||| ||||| ||||||| |||||| ||||||||||||||
Sbjct 241 GTCAACAATCAGCCTCAAAAGAAGCCAGCCAGGAGAAATAAGCCCGCTATTCCAAAGGGA 300
Query 343 AAAGTTGTTAAAGCTCCAGACTTCCAGAAAGAGAAGGAGTACTTTCGTGATATTGATGCT 402
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 AAAGTTGTTAAAGCTCCAGACTTCCAGAAAGAGAAGGAATACTTTCGTGATATTGATGCT 360
Query 403 TTTGAGCTTCTAGAAGAGAGTCCTTCTCCCAATAAATCTAGTACATGGACCATGGGTGAA 462
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 361 TTTGAGCTTCTGGAAGAGAGTCCTTCTCCCAATAAATCTAGTACATGGACCCTGGGAGAA 420
Query 463 CAAGTTGTTCCTGAGATGCCACATCTGTCCACAAGATTAGAAAAATGGCTAATTTCGAAG 522
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 CAAGTTGTTCCTGAGATGCCACATCTGTCCACAAGATTAGAAAAATGGCTAATTTCAAAG 480
Query 523 AAGTTAAATCATACTTGTGGTCCTTCGAGCACACTCTCTAAGATACTTGAAAACTCAGCC 582
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGTTAAATCGTACTTGTGGTCCTTCGAGCACACTCTCTAAGATACTTGAAAACTCAGCC 540
Query 583 ATACACCAGGAGTCAGTATGTGATAATGATGCCTTTGATTCATTG 627
| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 ACACACCAGGAGTCAACATGTGATAATGATGCCTTTGATTCATTG 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78846807150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5