BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09460.1
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910654 jgi|Araly1|910654|Al_scaffold_0001_908 1548 0.0
Ahg471040 jgi|Araly1|471040|fgenesh2_kg.1__994__AT1G09470.1 154 2e-36
> Ahg910654 jgi|Araly1|910654|Al_scaffold_0001_908
Length=990
Score = 1548 bits (838), Expect = 0.0
Identities = 945/996 (95%), Gaps = 9/996 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAAACAGAGTTActtcttcgtcttca-c--cttcttgtttctttctcttctctca 57
|||||||||||||||||| || | |||||| | |||||| ||||||||||||||||||
Sbjct 1 ATGGCGAAACAGAGTTAC-TC--CATCTTCACCTTCTTCTTCTTTCTTTCTCTTCTCTCA 57
Query 58 tactgttcttcAACAACTACACATCATGATGTGTTAAACCCACCAACGGTCTTTCCTACA 117
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TCCTGTTCTTCAACAACTACACATCATGATGTGTTAAACCCACCAACGGTCTTTCCTACA 117
Query 118 AACCCCACAACTACACCGACGGCTACATTTCCTCCGGTGACCATAACGCCAACAAATCCA 177
||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| |||
Sbjct 118 AACCCTACAACTACACCGCCGGCTACATTTCCTCCGGTTACCATAACGCCAACAAACCCA 177
Query 178 GCCACAACAGTTCCTATTGTTCCTCCAGTCACAACTATTCCACCTCCTACACTCACACCA 237
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 178 GCCACAACAGTTCCTATTGTTCCTCCTGTCACAACTATTCCTCCTCCTACACTCACACCA 237
Query 238 CCTCCAGTCATAACAATTCCTCCTCCTACACTCACACCACCTGTGACAAACCCAGTAACC 297
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 238 CCTCCAGTCACAACAATTCCTCCTCCTACACTCACACCACCTGTGACAAACCCAGTTACC 297
Query 298 AACCCAGTGACTCAGTATCCTCCAACACAACCCTCAGGGACGGTCCCAGTACCTGTTCCT 357
||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||
Sbjct 298 AACCCAGTGACTCAGTATCCTCCAACACAACCCTCAGGGGCGGTTCCAGTTCCTGTTCCT 357
Query 358 GTGGTTGCACCGCCTGTTGTCTCAAACTCTCCATCGGTTTCAGGCCAAAGCTGGTGTGTG 417
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||
Sbjct 358 GTGGTTGCACCGCCTGTTGTCTCAAACTCTCCATCGGTTCCAGGTCAAAGCTGGTGCGTG 417
Query 418 GCCAAGCCTGGAGCCTCTCAAGTCTCACTCCAACAGGCTCTTGACTATGCCTGCGGGATC 477
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 418 GCAAAGCCTGGAGCCTCTCAAATCTCACTCCAACAGGCTCTTGACTATGCCTGCGGGATC 477
Query 478 GCGGATTGCTCTCAACTACAGCAAGGCGGCAATTGTTATTCTCCTATCAGTCTTCAGAGT 537
||||||||||||||| ||||||||||||| || |||||||||||||||| |||||||| |
Sbjct 478 GCGGATTGCTCTCAATTACAGCAAGGCGGTAACTGTTATTCTCCTATCAATCTTCAGAAT 537
Query 538 CATGCCTCATTTGCCTTCAACAGCTATTACCAGAAGAATCCTTCTCCACAAAGCTGTGAT 597
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 538 CATGCCTCATTTGCCTTCAACAGCTATTACCAGAAGAACCCTTCTCCACAAAGCTGCGAT 597
Query 598 TTTGGCGGTGCAGCCTCATTAGTTAACACCAACCCAAGCACTGGTTCTTGTATATACCAG 657
|||||||||| |||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 598 TTTGGCGGTGTAGCCTCGGTAGTTAACACCAACCCAAGCACTGGTTCTTGCATTTACCAG 657
Query 658 ACAGGTTCATCGACATCAACACCAATGACAGCAGGAACAACAACACCAACTCCATCAACA 717
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 658 ACAGGCTCATCGACATCAACACCGATGACAGCAGGAACAACAACACCAACTCCATCAACA 717
Query 718 CAAACAGTGAACCAGCCTCCTGTCACATCAACACCTATAATACCAACAGGAGGCGGGATA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CAAACAGTGAACCAGCCTCCTGTCACATCAACACCTATAATACCAACAGGAGGCGGGATA 777
Query 778 ATCGGGGTTGGAACTCCGCCAGCGATTTTTAACCCCGCAAATCCTACATCAAATACGCTA 837
||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||||
Sbjct 778 ATCGGGGTTGGAACTCCACCAGCGATCTTCAACCCCGCGAATCCTACATCAAATACGCTA 837
Query 838 AACAATCCATCCTCAGGAGGTTTAGCGGGTGGTTACGGTTTTGATGGTTCGCCAAATGAG 897
|||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||| |
Sbjct 838 AACAATCCATCCTCAGGAGGTTTAACGGGT--T-ACGGTTTTGATGGTTCACCAAATGGG 894
Query 898 AACAATCCAACATCATCAGACTCTACACACTTGAAGATTCACTTTGGTCATGCTATGGTG 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 895 AACAATCCAACATCATCAGACTCTACACACTTGAAGATTCACTTTGGTCATGCTATAATG 954
Query 958 GCAACATTGATTCTTCACGCAGTGCTATTTCATTAG 993
||||||||||||||||||||||||||||||||||||
Sbjct 955 GCAACATTGATTCTTCACGCAGTGCTATTTCATTAG 990
> Ahg471040 jgi|Araly1|471040|fgenesh2_kg.1__994__AT1G09470.1
Length=1187
Score = 154 bits (83), Expect = 2e-36
Identities = 104/114 (91%), Gaps = 1/114 (1%)
Strand=Plus/Minus
Query 1151 GGTTGATTTGTTTTAAATATATCTCTTTAGGACCAAAAGCGGAAACTCAGACATTGTAAC 1210
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 GGTTGTTTTGTTTTAAATATATCTCTTTAGGACCAAAAGCGGAAACTCAGACATTGTAAC 1128
Query 1211 AAAGAGGTGTA-TCTTAATCCTTCATACACTGGAGGGTACTGTCTAACTATTTT 1263
||||||||||| | ||| |||| ||||||||| ||| ||| ||||| ||| |||
Sbjct 1127 AAAGAGGTGTAATATTATTCCTCCATACACTGTAGGATACGGTCTATCTACTTT 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5