BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09486.1
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475457 jgi|Araly1|475457|fgenesh2_kg.2__587__AT1G57860.1 344 9e-94
Ahg474849 jgi|Araly1|474849|fgenesh2_kg.1__4803__AT1G57660.1 339 4e-92
Ahg471057 jgi|Araly1|471057|fgenesh2_kg.1__1011__AT1G09590.1 250 2e-65
Ahg915742 jgi|Araly1|915742|Al_scaffold_0008_493 52.8 6e-06
> Ahg475457 jgi|Araly1|475457|fgenesh2_kg.2__587__AT1G57860.1
Length=559
Score = 344 bits (186), Expect = 9e-94
Identities = 202/210 (96%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 463 AGAACAAGAGATCTGTTCGCGAGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACT 522
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 43 AGAACAAGAGATCTGTTTGCGAGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACT 102
Query 523 TACCTCATAACCTTCAAGGTCGGCGATTACGTCGATGTCAAGGTTAATGGAGCTATTCAC 582
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 TATCTCAGAACCTTCAAGGTCGGCGATTACGTCGATGTCAAGGTTAATGGAGCTATTCAC 162
Query 583 AAGGGTATTCCTCATAAGTTCTACCATAGTCGTATTGGTCGTATCTGGAATCTCACTAAG 642
|||||||| |||||||||||||||||| |||||| |||||| ||||||||| ||||||||
Sbjct 163 AAGGGTATGCCTCATAAGTTCTACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAG 222
Query 643 CGTGCCGTTGGTGTTGAAGTCAACAAACAG 672
||||||||||||||||||||||||||||||
Sbjct 223 CGTGCCGTTGGTGTTGAAGTCAACAAACAG 252
Score = 176 bits (95), Expect = 3e-43
Identities = 105/110 (95%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 991 ACAGAATTATAAGGAAGAGGATACATGTACGTGTGGAGCATGTGCAACAGTCAAGGTGTG 1050
||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 260 ACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAGCAGTCAAGGTGTG 319
Query 1051 ATGAGGAGTTTAATCTCAGGAAGAAGCAGAACGATGTGCTTAAGGCTGCA 1100
|||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 320 CTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTAAGGCTGCA 369
> Ahg474849 jgi|Araly1|474849|fgenesh2_kg.1__4803__AT1G57660.1
Length=687
Score = 339 bits (183), Expect = 4e-92
Identities = 201/210 (96%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 463 AGAACAAGAGATCTGTTCGCGAGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACT 522
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 71 AGAACAAGAGATCTGTTCGCAAGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACT 130
Query 523 TACCTCATAACCTTCAAGGTCGGCGATTACGTCGATGTCAAGGTTAATGGAGCTATTCAC 582
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 131 TACCTCAGAACCTTCAAGGTCGGCGATTACGTCGATGTCAAGGTTAATGGAGCTATCCAC 190
Query 583 AAGGGTATTCCTCATAAGTTCTACCATAGTCGTATTGGTCGTATCTGGAATCTCACTAAG 642
|||||||| || ||||||||||||||| |||||| |||||| ||||||||| ||||||||
Sbjct 191 AAGGGTATGCCGCATAAGTTCTACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAG 250
Query 643 CGTGCCGTTGGTGTTGAAGTCAACAAACAG 672
||||||||||||||||||||||||||||||
Sbjct 251 CGTGCCGTTGGTGTTGAAGTCAACAAACAG 280
Score = 261 bits (141), Expect = 9e-69
Identities = 187/209 (89%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 1097 TGCAACAGTCAAGGTGTGATGATGAGTTTAGTCTCAGGAAGAAGCAAAACGATGTGTTTA 1156
|||| ||||||||||||| ||| ||||||| |||||||||||||| ||||||||| |||
Sbjct 330 TGCAGCAGTCAAGGTGTGCTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTA 389
Query 1157 AGACTGCTGCTAAAGCTAGATGTGAGACTATTAGCACTAAGAGACAACCTAAAGGTCCTA 1216
|| |||| |||||||||||| | |||||||| ||||| |||||||| |||||||||||||
Sbjct 390 AGGCTGCAGCTAAAGCTAGAGGAGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTA 449
Query 1217 AACCTTGTTTCATGGTTGAAGGTATGACCTTGGAGACTGTCACTCCCATTCCC-A--ATG 1273
|||| |||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 450 AACCGGGTTTCATGGTTGAAGGTATGACCTTGGAGACTGTTACTCCCATTCCTTACGATG 509
Query 1274 TTGTCAACGATCTCAAAGGTGGCTATTGA 1302
|||||||||||||||| ||||||||||||
Sbjct 510 TTGTCAACGATCTCAAGGGTGGCTATTGA 538
Score = 176 bits (95), Expect = 3e-43
Identities = 105/110 (95%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 991 ACAGAATTATAAGGAAGAGGATACATGTACGTGTGGAGCATGTGCAACAGTCAAGGTGTG 1050
||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 288 ACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAGCAGTCAAGGTGTG 347
Query 1051 ATGAGGAGTTTAATCTCAGGAAGAAGCAGAACGATGTGCTTAAGGCTGCA 1100
|||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 348 CTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTAAGGCTGCA 397
> Ahg471057 jgi|Araly1|471057|fgenesh2_kg.1__1011__AT1G09590.1
Length=617
Score = 250 bits (135), Expect = 2e-65
Identities = 186/211 (88%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 463 AGAACAAGAGATCTGTTCGCGAGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACT 522
||||| || |||||||||||||| |||||||||||||||||||| |||||||| || |||
Sbjct 59 AGAACGAGGGATCTGTTCGCGAGGCCATTCAGGAAGAAGGGTTACATTCCACTATCGACT 118
Query 523 TACCTCATAACCTTCAAGGTCGGCGATTACGTCGATGTCAAGGTTAATGGAGCTATTCAC 582
||||| | ||||||||||||||||||||||||||||| ||||| ||||| || || |||
Sbjct 119 TACCTGAGGACCTTCAAGGTCGGCGATTACGTCGATGTGAAGGTGAATGGTGCGATCCAC 178
Query 583 AAGGGTATTCCTCATAAGTTCTACCATAGTCGTATTGGTCGTATCTGGAATC-TCACTAA 641
|||||||| ||||| ||||||||||| |||||| ||||||| ||||||| | |||| ||
Sbjct 179 AAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTGTCTGGAA-CGTCACCAA 237
Query 642 GCGTGCCGTTGGTGTTGAAGTCAACAAACAG 672
||| ||||| |||||||||||||||||||||
Sbjct 238 GCGCGCCGTCGGTGTTGAAGTCAACAAACAG 268
> Ahg915742 jgi|Araly1|915742|Al_scaffold_0008_493
Length=180
Score = 52.8 bits (28), Expect = 6e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 82 TTTAGTCTGTTCGTTTCGTCGCCGCAGG 109
||||||||||||||||||||||||||||
Sbjct 173 TTTAGTCTGTTCGTTTCGTCGCCGCAGG 146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48682965009
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5