BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09500.1
Length=1150
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471045 jgi|Araly1|471045|fgenesh2_kg.1__999__AT1G09500.1 1520 0.0
Ahg471042 jgi|Araly1|471042|fgenesh2_kg.1__996__AT1G09490.1 621 3e-177
> Ahg471045 jgi|Araly1|471045|fgenesh2_kg.1__999__AT1G09500.1
Length=1120
Score = 1520 bits (823), Expect = 0.0
Identities = 979/1055 (93%), Gaps = 8/1055 (1%)
Strand=Plus/Plus
Query 23 CACACTAATTCTACTCGCCAAAT-AAAGTGAAAAGAGATGGCTGATGGAGGAAAGGTGGT 81
||||||||||||||| ||| || |||||| |||||||||| |||||||||| |||||
Sbjct 14 CACACTAATTCTACTTACCAGATAAAAGTG--AAGAGATGGCCCATGGAGGAAAAGTGGT 71
Query 82 CTGCGTAACCGGAGCTTCCGGTTACATAGCGTCTTGGATCGTCAAGCTTTTGCTCTTCCG 141
||| || |||||||||||||| |||||||| |||||||| || |||||||||||| ||||
Sbjct 72 CTGTGTCACCGGAGCTTCCGGATACATAGCATCTTGGATTGTTAAGCTTTTGCTCCTCCG 131
Query 142 TGGCTACACCATCAATGCCACCGTTCGAGACCCAAAAGATCGAAAGAAAACAGATCACCT 201
|||||||||| ||||||| |||||| |||| ||||| |||||||||||||||||||||||
Sbjct 132 TGGCTACACCGTCAATGCAACCGTTAGAGATCCAAACGATCGAAAGAAAACAGATCACCT 191
Query 202 TCTAGCACTTGACGGCGCAAAAGAAAGACTCAAATTATTCAAAGCAGATCTTCTAGATGA 261
||| || || |||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 192 TCTTGCGCTGGACGGCGCAAAAGAAAGACTCAAATTATTCAAAGCAGATCTTTTAGAAGA 251
Query 262 AGGTTCTTTTGAGC-TCGCAATTGATGGATGCGAGACTGTCTTCCACACTGCTTCACCGG 320
||||||||| || | | ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 252 AGGTTCTTTCGAACAT-GCAATTGATGGATGCGATACTGTCTTCCACACTGCTTCACCGG 310
Query 321 TTGCAATCACTGTCAAGACTGATCCTCAGGTTGAGCTGATCAATCCAGCCGTCAATGGTA 380
|| ||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 311 TTATGATCACTGTCAATACTGATCCTCAGGTTGAGCTGATTGATCCAGCCGTCAAGGGTA 370
Query 381 CTATTAACGTCCTAAGAACTTGCACTAAAGTGTCTTCTGTCAAGAGGGTCATCTTAACAT 440
||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 371 CTATTAACGTCCTGAGAACTTGCACTAAGGTGTCTTCTGTCAAGAGGGTCATCGTAACAT 430
Query 441 CGTCCATGGCCGCAGTTCTTGCGCCTGAGACCAAGTTGGGACCAAACGATGTAGTAGACG 500
| || ||||| ||||||||||| ||| ||||||||||||||||||| || ||||||||||
Sbjct 431 CATCTATGGCAGCAGTTCTTGCTCCTAAGACCAAGTTGGGACCAAATGACGTAGTAGACG 490
Query 501 AAACCTTCTTCACTAATCCAAGTTTTGCTGAGGAGAGAAAGCAATGGTATGTACTTTCTA 560
|||||||||||||| |||||||||||||||||| || ||||||||||||| ||||||| |
Sbjct 491 AAACCTTCTTCACTGATCCAAGTTTTGCTGAGGGGAAAAAGCAATGGTATATACTTTCGA 550
Query 561 AGACTTTGGCCGAAGATGCAGCATGGCGATTTGCCAAGGACAATGAGATCGACTTGATCG 620
|||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||
Sbjct 551 AGACTTTGGCCGAAGATGCAGCATGGCGATTTGCCACGGCCAATCAGATCGACTTGATCG 610
Query 621 TACTGAATCCGGGACTTGTGACTGGACCAATCTTGCAGCCAACTCTTAATTTCTCGGTAG 680
|||| ||||| |||||||||| ||||||||||||||| ||||||||||| ||||||||||
Sbjct 611 TACTAAATCCAGGACTTGTGATTGGACCAATCTTGCATCCAACTCTTAACTTCTCGGTAG 670
Query 681 CTGTGATTGTGGAACTTATGAAAGGCAAGAATCCTTTTAATACTACACATCATAGGTTCG 740
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 671 CTGTGATTGTGGAACTTATGAAAGGTAAGAATCCTTTTAATACTAGACATCATAGGTTCG 730
Query 741 TGGACGTGAGAGATGTTGCTCTAGCTCATGTAAAGGCACTCGAGACTCCTTCAGCCAATG 800
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 731 TGGACGTGAGAGATGTTGCTCTAGCTCATGTCAAGGCACTCGAGACTCCTTCAGCCAATG 790
Query 801 GCAGATATATCATTGATGGTCCGGTTGTGACAATAAAAGACATTGAAAACGTTTTGCGCG 860
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 791 GCAGATATATCATTGATGGTCCGGTTGTGACAATAAAAGACATTGAAAAAGTTTTGCGCG 850
Query 861 AATTCTTTCCTGATTTGTGTATTGCTGATAGGAATGAAGACATTACTGAGCTGAATTCAG 920
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 851 AATTCTTTCCTGATTTGTGCATTGCTGATAGGAATGAAGACATTACTGAGATGAATTCAG 910
Query 921 TGACTTTCAATGTGTGTCTGGATAAAGTGAAAAGTTTGGGAATAATTGAGT-TCACTCCT 979
|||||| ||| ||||||||||| |||||||||||||||||||||| ||| | ||||||||
Sbjct 911 TGACTTACAAAGTGTGTCTGGAGAAAGTGAAAAGTTTGGGAATAACTGA-TCTCACTCCT 969
Query 980 ACAGAAACAAGCCTTAGAGACACTGTTCTTAGTCTCAAGGAGAAATGTCTTGTGTGATCT 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 ACAGAAACAAGCCTTAGAGACACTGTTCTTAGTCTCAAGGAGAAATGTCTTGTGTGATCT 1029
Query 1040 TCTTTATTGTTTTTGGTTACTTGTTATTCCTTGCA 1074
||||||||||||| ||| |||||||||||| ||||
Sbjct 1030 TCTTTATTGTTTTGGGT-ACTTGTTATTCCATGCA 1063
> Ahg471042 jgi|Araly1|471042|fgenesh2_kg.1__996__AT1G09490.1
Length=1036
Score = 621 bits (336), Expect = 3e-177
Identities = 792/1003 (79%), Gaps = 68/1003 (7%)
Strand=Plus/Plus
Query 68 GGAGGAAAGGTGGTCTGCGTAACCGGAGCTTCCGGTTACATAGCGTCTTGGATCGTCAAG 127
||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 15 GGAGGAAAGGTTGTCTGCGTTACCGGAGCTTCCGGTTACATAGCGTCTTGGATTGTCAAG 74
Query 128 CTTTTGCTCTTCCGTGGCTACACCATCAATGCCACCGTTC-GAGACCCAAAAGATC-GAA 185
||||||||| |||||||||||||| |||||||||| || | ||||||||| || | | |
Sbjct 75 CTTTTGCTCCTCCGTGGCTACACCGTCAATGCCACTGT-CAGAGACCCAACGGA-CAGGA 132
Query 186 AGAAAACAGATCACCTTCTAGCACTTGACGGCGCAAAAGAAAGACTCAAATTATTCAAAG 245
|||||||||| || ||||| ||||| || || |||||||||||||||||||| |||||||
Sbjct 133 AGAAAACAGAACATCTTCTTGCACTAGAGGGTGCAAAAGAAAGACTCAAATTGTTCAAAG 192
Query 246 CAGATCTTCTAGATGAAGGTTCTTTTGAGCTCGCAATTGATGGATGCGA-GACTGTCTTC 304
|||||||| | || ||| ||||| || | || || | || || || | ||||||||
Sbjct 193 CAGATCTTTTGGAAGAATCCTCTTTCGAACAAGCTATCCAAGGCTGTGACG-CTGTCTTC 251
Query 305 CACACTGCTTCACCGGTTGCAAT-CACTGTCAAGACTGATCCTCAGGTTGAGCTGATCAA 363
||||| ||||| || || | || ||| |||| | ||||||||| ||||||||| |
Sbjct 252 CACACCGCTTCTCCAGTC-CTATTCACCGTCAC-A--GATCCTCAGACTGAGCTGATTGA 307
Query 364 TCCAGCCGTCAATGGTACTATTAACGTCCT-AAGAACTTGCACTA-AAGTGTCTTCTGTC 421
||||||| | || ||||||||||||||||| || | | |||| | |||| || ||||||
Sbjct 308 TCCAGCCTTAAAGGGTACTATTAACGTCCTTAATA-CATGCAA-ACAAGTTTCCTCTGTC 365
Query 422 AAGAGGGTCAT-CTTAACATCGTCCATGGCCGCAGTTCT-TGCGCCTGAGAC-CA-AGTT 477
||||| ||||| || | |||| |||| ||| || ||||| | | | | || | | | ||
Sbjct 366 AAGAGAGTCATTCTGA-CATCTTCCACGGCTGCGGTTCTCT-CTCGTCAGCCTCCTA-TT 422
Query 478 GGGACCAAACGATGTAGTAGACGAAACCTTCTTCACTAATCCAAGTTT-TGCTGAGGAGA 536
||| |||||||| || || |||||||| |||||| | |||||||| | ||| | |||||
Sbjct 423 GGG-CCAAACGACGTGGTGGACGAAACTTTCTTCTCCGATCCAAGTCTATGCAG-GGAGA 480
Query 537 GAAAGCAAT-GGTATGT-ACTTTCTAAGACTTTGGCCGAAGA-TGCAGCATGGCGATTTG 593
|||| ||| ||||| | ||| || ||||||||||| || || |||||| |||| |||||
Sbjct 481 CAAAG-AATTGGTAT-TCACTCTCCAAGACTTTGGCAGA-GAATGCAGCTTGGCAATTTG 537
Query 594 CCAAGGACAATGAGA-TCGACTTGATCGTACTGAATCCGGGACTTGT--GACTGGACCAA 650
|||| ||||||| || ||||| || | || ||||||| ||| || | | | ||||||
Sbjct 538 CCAAAGACAATG-GAATCGACATGGTTGTGTTGAATCCAGGATTTATTTG-C-GGACCAC 594
Query 651 TCTTGCAGCCAACTCTTAATTTCTCGGTAGCTG-TGATTGTGGAACTT-ATGAAAGGCAA 708
||||||| |||||||||||||| ||||||| | | |||||||| || || || || ||
Sbjct 595 TCTTGCAACCAACTCTTAATTTTTCGGTAGA-GCTAATTGTGGAT-TTCATCAATGGTAA 652
Query 709 GAATCCTTTT-AATACTACACA-TCATAGGTTCGTGGACGTGAGAGATGTTGCTCT-AGC 765
||| |||||| |||| | | | | | |||||||||||||| |||||||| || || |||
Sbjct 653 GAA-CCTTTTCAATAAAAGATACT-ACAGGTTCGTGGACGTAAGAGATGTCGC-CTTAGC 709
Query 766 TCATGT-AAAGGCACTCGAGACTCCTTCAGCCAATGGCAGATATATCATTGATGGTCCG- 823
|||| | |||| | | |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 710 TCATATCAAAG-CGTTGGAGACTCCTTCAGCCAATGGCAGATACATCATCGATGGTCCAA 768
Query 824 GTTGTGACAATAAAAGACATTGAAAACGTTT-TGCGCGAATTCTTTCCT-GATTTGTGTA 881
|| ||| |||| |||||| | | | || |||| || | ||||| ||||||| ||
Sbjct 769 GTA-TGAGTGTAAACGACATTTTAGA-GATTCTGCGGGAGCT-TTTCCCAGATTTGTCTA 825
Query 882 TTGCTGATAGGAATGAAGACATTACTGAGCTGAATTCAGTGACTTT-CAATGTGTGTCTG 940
||||||||| ||||| ||| | | |||| ||||| | ||| | | ||| |||||| ||
Sbjct 826 TTGCTGATACGAATGGAGA-A--AGTGAGATGAATGAAATGA-TATGCAAAGTGTGTGTG 881
Query 941 GATAAAGTGAA-AAGTTTGGGAATAATTGAGTTCACTCCTACAGAAA-CAAGCCTTAGAG 998
|| |||||||| || ||||||| | ||||||||||||| |||| ||||||||||||
Sbjct 882 GAGAAAGTGAAGAA-TTTGGGAGTG---GAGTTCACTCCTAT-GAAAACAAGCCTTAGAG 936
Query 999 ACACTGTTCTTAGTCTCAAGGAGAAATGTCTTGTGTGAT-CTT 1040
||||| || |||| |||||||| ||||||||| | |||| |||
Sbjct 937 ACACTATTGTTAGCCTCAAGGATAAATGTCTTTTATGATTCTT 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42888281625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5