BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09510.1
Length=1078
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471046 jgi|Araly1|471046|fgenesh2_kg.1__1000__AT1G09510.1 1567 0.0
Ahg471045 jgi|Araly1|471045|fgenesh2_kg.1__999__AT1G09500.1 712 0.0
Ahg471042 jgi|Araly1|471042|fgenesh2_kg.1__996__AT1G09490.1 597 5e-170
> Ahg471046 jgi|Araly1|471046|fgenesh2_kg.1__1000__AT1G09510.1
Length=1062
Score = 1567 bits (848), Expect = 0.0
Identities = 971/1032 (94%), Gaps = 2/1032 (0%)
Strand=Plus/Plus
Query 1 ATTAGAGAAAGATGGCTGACGGAGGAAAAATGGTTTGCGTCACTGGAGCGTCCGGTTACG 60
|||||||| ||||||||||| |||||||||||||||||||||| ||||| || |||||||
Sbjct 1 ATTAGAGAGAGATGGCTGACAGAGGAAAAATGGTTTGCGTCACCGGAGCTTCTGGTTACG 60
Query 61 TTGCGTCTTGGATTGTTAAGCTTTTGCTCCTCCGTGGCTACACTGTTAGGGCCACCGTTC 120
| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 61 TAGCGTCTTGGATTGTTAAGCTTTTGCTTCTCCGTGGCTACACCGTTAGGGCCACCGTTC 120
Query 121 GAGACCCAAGTGATGAAAAGAAAACAGAACATCTTCTTGCACTAGACGGTGCAAAAGAAA 180
||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||
Sbjct 121 GAGACCCAAGTGATGCAAAGAAAACAGAACATCTTCTTGCACTGGAGGGTGCAAAAGAAA 180
Query 181 AACTCAAACTGTTCAAAGCAGATCTTCTGGAAGAAGGTTCTTTCGAGCAAGCTATTGAAG 240
||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||
Sbjct 181 GACTCAAACTGTTCAAAGCAGATCTTTTGGAAGAATCTTCTTTCGAGCAAGCAATTGAAG 240
Query 241 GTTGTGACGCTGTCTTCCATACCGCTTCTCCAGTTTCACTAACTGTAACTGATCCTCAGA 300
| ||||||||||||||||| |||||||||||||||||| ||||||| ||||||| |||||
Sbjct 241 GATGTGACGCTGTCTTCCACACCGCTTCTCCAGTTTCATTAACTGTGACTGATCATCAGA 300
Query 301 TTGAGCTGATTGACCCGGCAGTAAAGGGAACACTTAACGTCCTTAAAACTTGCGCTAAAG 360
||||||||||||| ||||| || ||||||||||||||||||||| | ||||| |||||||
Sbjct 301 TTGAGCTGATTGATCCGGCCGTTAAGGGAACACTTAACGTCCTTGACACTTGTGCTAAAG 360
Query 361 TTTCATCTGTTAAGAGGGTCATCGTAACATCGTCCATGGCCGCAGTTCTCTTTCGTGAGC 420
| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 361 TGTCATCTGTTAAGAGGGTCATCGTAACATCGTCCATGGCCGCAGTTTTGTTTCGTGTGC 420
Query 421 CTACCTTGGGACCAAACGACTTAGTAGACGAGAGTTGCTTCTCGGATCCAAACTTTTGCA 480
|| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 421 CTCCCTTGGGACCAAACGACTCAGTAGACGAGAGTTGCTTCTCGGATCCAAATTTTTGCA 480
Query 481 CTGAGAAAAAGCTTTGGTATGCGCTCTCAAAGACTTTGGCCGAAGATGAAGCATGGCGAT 540
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 CTGAGAATAAGCTTTGGTATGCACTCTCAAAGACTTTGGCCGAAGATGAAGCATGGCGAT 540
Query 541 TCGCAAAGGAAAAAGGGCTCGACTTGGTCGTAATAAATCCAGGACTTGTGCTCGGACCGC 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCGCAAAGGAAAAAGGGCTTGACTTGGTCGTAATAAATCCAGGACTTGTGCTCGGACCGC 600
Query 601 TCTTGAAACCAAGCCTTACTTTCTCAGTAAATGTGATTGTGGAACTTATTACAGGTAAGG 660
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 601 TCTTGAAACCAAGTCTTACTTTCTCAGTAAATGTGATTGTGGATCTTATTACAGGTAAGG 660
Query 661 ACAATTTCATCAACAAGGATTTTAGGCTCGTCGATGTGAGGGATGTTGCCCTCGCTCATA 720
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACAATTTCATTAACAAGAATTTTAGGCTCGTCGATGTGAGGGATGTTGCCCTCGCTCATG 720
Query 721 TCAAAGCGTTCGAGACTCCTTCAGCCAACGGTAGATATATTATTGAGGGTCCGGTTGTGA 780
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 721 TCAAAGCGTTCGAGACTCCTTCTGCCAACGGTAGATATATCATTGAGGGTCCGGTGGTGA 780
Query 781 CGATAAATGACATTGAGAAGATTTTGCGTGAATTCTTTCCTGACTTGAATCTCGGTAACA 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 781 CGATAAATGACATTGAGAAGATTTTGCGTGAATTCTTTCCTGACTTGAATCTCGTTAACA 840
Query 841 AGGGTGAAGCAAGTGAGATCATTCCAGTGATATACAAGCTATGTGTTGAGAAAGTGAAGA 900
|| |||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 841 AGAATGAAGCAATTGAGATCATTCCAGTGATTTACAAGCTATGTGTTGAAAAAGTGAAGA 900
Query 901 GTTTGGGAATTGAGTTCACTCCCACAGAAGCAACCCTTAGAGACACTATTCTTAGCCTCA 960
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 901 GTTTGGGAATTGAGTTCACTCCTACAGAAGCAACCATTAGAGACACTATTCTTAGCCTCA 960
Query 961 AAGAGAAATGTCTTGTGTGATCATCCTATCTTGTTATTGCTT-TCCTGTCCTTTACAATT 1019
||||||||||||||||||||| ||| |||||||||||||| | || |||||||| ||||
Sbjct 961 AAGAGAAATGTCTTGTGTGATGATCATATCTTGTTATTGCCTCTC-TGTCCTTTTTAATT 1019
Query 1020 GTACTATTGAAC 1031
|||||||||||
Sbjct 1020 TTACTATTGAAC 1031
> Ahg471045 jgi|Araly1|471045|fgenesh2_kg.1__999__AT1G09500.1
Length=1120
Score = 712 bits (385), Expect = 0.0
Identities = 820/1024 (80%), Gaps = 54/1024 (5%)
Strand=Plus/Plus
Query 7 GAA-AGATGGCTGACGGAGGAAAAATGGTTTGCGTCACTGGAGCGTCCGGTTACGTTGCG 65
||| ||||||| | ||||||||| |||| || ||||| ||||| ||||| ||| | ||
Sbjct 43 GAAGAGATGGCCCATGGAGGAAAAGTGGTCTGTGTCACCGGAGCTTCCGGATACATAGCA 102
Query 66 TCTTGGATTGTTAAGCTTTTGCTCCTCCGTGGCTACACTGTTAGGGCCACCGTTCGAGAC 125
|||||||||||||||||||||||||||||||||||||| || | || |||||| ||||
Sbjct 103 TCTTGGATTGTTAAGCTTTTGCTCCTCCGTGGCTACACCGTCAATGCAACCGTTAGAGAT 162
Query 126 CCAAGTGAT-GAAAAGAAAACAGAACATCTTCTTGCACTAGACGGTGCAAAAGAAAAACT 184
|||| ||| |||| ||||||||| || |||||||| || ||||| |||||||||| |||
Sbjct 163 CCAAACGATCGAAA-GAAAACAGATCACCTTCTTGCGCTGGACGGCGCAAAAGAAAGACT 221
Query 185 CAAACTGTTCAAAGCAGATCTTCTGGAAGAAGGTTCTTTCGAGCAAGCTATTGAAGGTTG 244
|||| | ||||||||||||||| | ||||||||||||||||| || || ||||| || ||
Sbjct 222 CAAATTATTCAAAGCAGATCTTTTAGAAGAAGGTTCTTTCGAACATGCAATTGATGGATG 281
Query 245 TGACGCTGTCTTCCATACCGCTTCTCCAGTT-TCACTAACTGT-AA--CTGATCCTCAGA 300
|| |||||||||| || ||||| || ||| | | | ||||| || |||||||||||
Sbjct 282 CGATACTGTCTTCCACACTGCTTCACCGGTTATGA-TCACTGTCAATACTGATCCTCAGG 340
Query 301 TTGAGCTGATTGACCCGGCAGTAAAGGGAAC-ACTTAACGTCCTTAAAACTTGCGCTAAA 359
||||||||||||| || || || ||||| || | |||||||||| | ||||||| ||||
Sbjct 341 TTGAGCTGATTGATCCAGCCGTCAAGGGTACTA-TTAACGTCCTGAGAACTTGCACTAAG 399
Query 360 GTTTCATCTGTTAAGAGGGTCATCGTAACATCGTCCATGGCCGCAGTTCTCTT-TCGTGA 418
|| || ||||| |||||||||||||||||||| || ||||| |||||||| | || | |
Sbjct 400 GTGTCTTCTGTCAAGAGGGTCATCGTAACATCATCTATGGCAGCAGTTCT-TGCTCCTAA 458
Query 419 G-CCTACCTTGGGACCAAACGACTTAGTAGACGAGAG-TTGCTTCTCGGATCCAAACTTT 476
| || | ||||||||||| ||| |||||||||| | || |||| | ||||||| |||
Sbjct 459 GACCAAG-TTGGGACCAAATGACGTAGTAGACGAAACCTT-CTTCACTGATCCAAG-TTT 515
Query 477 TGCACTGAG---AAAAAGCTTTGGTATGCGCTCTCAAAGACTTTGGCCGAAGATGAAGCA 533
||| |||| ||||||| |||||| || || ||||||||||||||||||| ||||
Sbjct 516 TGC--TGAGGGGAAAAAGCAATGGTATATACTTTCGAAGACTTTGGCCGAAGATGCAGCA 573
Query 534 TGGCGATTCGCAAAGGAAAAAGGGCTCGACTTGGTCGTAATAAATCCAGGACTTGTGCTC 593
|||||||| || | || || | |||||||| ||||| ||||||||||||||||| |
Sbjct 574 TGGCGATTTGCCACGGCCAATCAGATCGACTTGATCGTACTAAATCCAGGACTTGTGATT 633
Query 594 GGACCGCTCTTGAAACCAAGC-CTTA-CTTTCTCAGTAAATGTGATTGTGGAACTTATTA 651
||||| ||||| | |||| | |||| ||| ||| ||| |||||||||||||||||| |
Sbjct 634 GGACCAATCTTGCATCCAA-CTCTTAACTT-CTCGGTAGCTGTGATTGTGGAACTTATGA 691
Query 652 CAGGTAAGGA-CAATTTCATCAACAAGG-ATTTTAGGCTCGTCGATGTGAGGGATGTTGC 709
||||||| | | ||| || | | || || |||| |||| || ||||| ||||||||
Sbjct 692 AAGGTAAGAATCCTTTTAAT-A-CTAGACATCATAGGTTCGTGGACGTGAGAGATGTTGC 749
Query 710 CCTCGCTCATATCAAAGCGTTCGAGACTCCTTCAGCCAACGGTAGATATATTATTGAGGG 769
|| |||||| |||| || ||||||||||||||||||| || |||||||| ||||| ||
Sbjct 750 TCTAGCTCATGTCAAGGCACTCGAGACTCCTTCAGCCAATGGCAGATATATCATTGATGG 809
Query 770 TCCGGTTGTGACGATAAATGACATTGAGAA-GATTTTGCGTGAATTCTTTCCTGACTTGA 828
|||||||||||| ||||| |||||||| || | ||||||| |||||||||||||| |||
Sbjct 810 TCCGGTTGTGACAATAAAAGACATTGAAAAAG-TTTTGCGCGAATTCTTTCCTGATTTGT 868
Query 829 --ATCTCGGTAACAAGGG-TGAAG-CA--AGTGAGATCA-TTCCAGTGA-TATACAA-GC 879
|| | | | | | || ||||| || | |||||| | ||| ||||| | ||||| |
Sbjct 869 GCAT-T-GCTGATA-GGAATGAAGACATTACTGAGATGAATTC-AGTGACT-TACAAAG- 922
Query 880 TATGTGTTGAGAAAGTGAAGAGTTTGGGAAT---TGAGT-TCACTCCCACAGAAGCAACC 935
| ||| | ||||||||||| ||||||||||| ||| | ||||||| |||||| ||| |
Sbjct 923 TGTGTCTGGAGAAAGTGAAAAGTTTGGGAATAACTGA-TCTCACTCCTACAGAAACAAGC 981
Query 936 CTTAGAGACACTATTCTTAGCCTCAAAGAGAAATGTCTTGTGTGATCATCCTATCTTGTT 995
|||||||||||| ||||||| ||||| |||||||||||||||||||| || | | |||||
Sbjct 982 CTTAGAGACACTGTTCTTAGTCTCAAGGAGAAATGTCTTGTGTGATCTTCTT-TATTGTT 1040
Query 996 ATTG 999
|||
Sbjct 1041 -TTG 1043
> Ahg471042 jgi|Araly1|471042|fgenesh2_kg.1__996__AT1G09490.1
Length=1036
Score = 597 bits (323), Expect = 5e-170
Identities = 775/988 (78%), Gaps = 52/988 (5%)
Strand=Plus/Plus
Query 20 CGGAGGAAAAATGGTTTGCGTCACTGGAGCGTCCGGTTACGTTGCGTCTTGGATTGTTAA 79
||||||||| | || ||||| || ||||| ||||||||| | |||||||||||||| ||
Sbjct 14 CGGAGGAAAGGTTGTCTGCGTTACCGGAGCTTCCGGTTACATAGCGTCTTGGATTGTCAA 73
Query 80 GCTTTTGCTCCTCCGTGGCTACACTGTTAGGGCCACCGTTC-GAGACCCAA-GTGATGA- 136
|||||||||||||||||||||||| || | ||||| | || ||||||||| | || |
Sbjct 74 GCTTTTGCTCCTCCGTGGCTACACCGTCAATGCCACTG-TCAGAGACCCAACG-GA-CAG 130
Query 137 AAAGAAAACAGAACATCTTCTTGCACTAGACGGTGCAAAAGAAAAACTCAAACTGTTCAA 196
||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||
Sbjct 131 GAAGAAAACAGAACATCTTCTTGCACTAGAGGGTGCAAAAGAAAGACTCAAATTGTTCAA 190
Query 197 AGCAGATCTTCTGGAAGAAGGTTCTTTCGAGCAAGCTATTGAAGGTTGTGACGCTGTCTT 256
|||||||||| |||||||| |||||||| |||||||| |||| ||||||||||||||
Sbjct 191 AGCAGATCTTTTGGAAGAATCCTCTTTCGAACAAGCTATCCAAGGCTGTGACGCTGTCTT 250
Query 257 CCATACCGCTTCTCCAGTT-TCACTAACTGTAACTGATCCTCAGATTGAGCTGATTGACC 315
||| |||||||||||||| | | | || || || |||||||||| |||||||||||| |
Sbjct 251 CCACACCGCTTCTCCAGTCCT-ATTCACCGTCACAGATCCTCAGACTGAGCTGATTGATC 309
Query 316 CGGCAGTAAAGGGAAC-ACTTAACGTCCTTAAAACTTGCGCTA-AAGTTTCATCTGTTAA 373
| || ||||||| || | ||||||||||||| || ||| | ||||||| ||||| ||
Sbjct 310 CAGCCTTAAAGGGTACTA-TTAACGTCCTTAATACATGCAA-ACAAGTTTCCTCTGTCAA 367
Query 374 GAGGGTCAT-CGTAACATCGTCCATGGCCGCAGTTCTCTTTCGTGAGCCTACCT-T-GGG 430
||| ||||| | | ||||| |||| ||| || ||||||| |||| ||||| ||| | |||
Sbjct 368 GAGAGTCATTC-TGACATCTTCCACGGCTGCGGTTCTCTCTCGTCAGCCT-CCTATTGGG 425
Query 431 ACCAAACGACTTAGTAGACGAGAGTTGCTTCTCGGATCCAAA-CTTTTGCACTGAGAAAA 489
||||||||| | || ||||| | || |||||| ||||||| || | ||| |||| ||
Sbjct 426 -CCAAACGACGTGGTGGACGAAACTTTCTTCTCCGATCCAAGTCTAT-GCAGGGAGACAA 483
Query 490 AGCTTTGGTATGCGCTCTCAAAGACTTTGGCCGAAGA-TGAAGCATGGCGATTCGC-AAA 547
|| ||||||| | ||||| ||||||||||| || || || ||| |||| ||| || |||
Sbjct 484 AGAATTGGTATTCACTCTCCAAGACTTTGGCAGA-GAATGCAGCTTGGCAATTTGCCAAA 542
Query 548 GGAAAAAGGGCTCGACTTGGTCGTAATAAATCCAGGACTTGTGCT-CGGACCGCTCTTGA 606
| | || || ||||| |||| || | ||||||||| || | | |||||| ||||||
Sbjct 543 G-ACAATGGAATCGACATGGTTGTGTTGAATCCAGGATTTATT-TGCGGACCACTCTTGC 600
Query 607 AACCAAGC-CTTACTTTCTCAGTAAATG-TGATTGTGGAACTT-ATTACA-GGTAAGGAC 662
|||||| | |||| ||| || ||| | | | |||||||| || || | | |||||| ||
Sbjct 601 AACCAA-CTCTTAATTTTTCGGTAGA-GCTAATTGTGGAT-TTCATCA-ATGGTAAGAAC 656
Query 663 AATTTCA-TCAACAAGGATTTTA--GGCTCGTCGATGTGAGGGATGTTGCCCTCGCTCAT 719
||||| | || ||| || || || |||| || || || ||||| ||| | ||||||
Sbjct 657 CTTTTCAAT-AA-AAG-ATACTACAGGTTCGTGGACGTAAGAGATGTCGCCTTAGCTCAT 713
Query 720 ATCAAAGCGTTCGAGACTCCTTCAGCCAACGGTAGATATATTATTGAGGGTCCG-GT-TG 777
||||||||||| ||||||||||||||||| || ||||| || || || ||||| || ||
Sbjct 714 ATCAAAGCGTTGGAGACTCCTTCAGCCAATGGCAGATACATCATCGATGGTCCAAGTATG 773
Query 778 TGACGATAAATGACATTG-AGAAGATTTTGCGTGAATTCTTTCCT-GACTTGAATCTCGG 835
| | |||| |||||| ||| |||| |||| || | ||||| || ||| | | |
Sbjct 774 AGT-G-TAAACGACATTTTAGA-GATTCTGCGGGAGCT-TTTCCCAGATTTGTCTATTGC 829
Query 836 TAACAAGGGTGAAGCAAGTGAGATCATTCCAGTGATATACAA-GCTATGTGTTGAGAAAG 894
| | | | || || ||||||||| | | | |||||| ||| | | ||||| |||||||
Sbjct 830 TGATACGAATGGAGAAAGTGAGATGAATGAAATGATATGCAAAG-TGTGTGTGGAGAAAG 888
Query 895 TGAAGAGTTTGGGAATTGAGTTCACTCCCAC-AGAAGCAACCCTTAGAGACACTATTCTT 953
|||||| ||||||| | ||||||||||| | | || ||| |||||||||||||||| ||
Sbjct 889 TGAAGAATTTGGGAGTGGAGTTCACTCCTATGAAAA-CAAGCCTTAGAGACACTATTGTT 947
Query 954 AGCCTCAAAGAGAAATGTCTTGTGTGAT 981
|||||||| || ||||||||| | ||||
Sbjct 948 AGCCTCAAGGATAAATGTCTTTTATGAT 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40143431601
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5