BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09520.1
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471047 jgi|Araly1|471047|fgenesh2_kg.1__1001__AT1G09520.1 1238 0.0
> Ahg471047 jgi|Araly1|471047|fgenesh2_kg.1__1001__AT1G09520.1
Length=1096
Score = 1238 bits (670), Expect = 0.0
Identities = 971/1105 (88%), Gaps = 66/1105 (6%)
Strand=Plus/Plus
Query 10 AGAGAGACACTATGAATCTTCCATCGTCAACGACGGCGACGTCAACCTCCGCGACTTCCG 69
||| ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 1 AGACAGACACTATGAATCTCCCATCGTCAACGACGGCAACGTCAACCTCCGCTTCTTCCG 60
Query 70 ATGCAGCGGCGAATTCCACCGAAAGATGCGATGATTGCGGAAG-CTCAGACGCCTGGGTG 128
||||||||||| |||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 61 ATGCAGCGGCGGATTCCACCGAGAGATGCGATGATTGCGGAAGCCT-AGACGCCTGGGTG 119
Query 129 ATACACACAGTACGTCTCCGTGCATCTCTCCGCTTCTTCTGCACTCATTGTCTCCTCCGC 188
|||||||||||| ||||||| ||||||||||||||||||||| ||||| |||||||||
Sbjct 120 ATACACACAGTAAAACTCCGTGGATCTCTCCGCTTCTTCTGCACACATTGCCTCCTCCGC 179
Query 189 AACCATCCGGCGTCGTTTTGTCCCGGTTGCTTCGCCTTGTACGATTCATCTCCGCCG--T 246
||||||||| |||||||||||||| |||||||||||| |||||||||||||||||| |
Sbjct 180 AACCATCCGACGTCGTTTTGTCCCTCTTGCTTCGCCTTCTACGATTCATCTCCGCCGAAT 239
Query 247 -CTTTTCGCCGCGTCTCTTGTTCC-ATT-AAAGGGTGCCACTCCTTGACTCACATTCACT 303
|||||||||||||| |||| ||| ||| || ||||| |||||||||||||||||| |
Sbjct 240 ACTTTTCGCCGCGTCGCTTGCTCCAATTCCAA--GTGCCCCTCCTTGACTCACATTCATT 297
Query 304 GTGCCGGCGATG-AAAGT-CACC-T-TTCTTATCTCTGTCCTCCTTGCC-GAGACCCTAA 358
| |||||||||| ||| | | || | ||||||||||||||||||||||| || ||||||
Sbjct 298 GCGCCGGCGATGCAAA-TCCCCCTTCTTCTTATCTCTGTCCTCCTTGCCTGA-ACCCTAC 355
Query 359 TTCCTTCTCCTTCTTCCGCCCTATCGTCGACGAAAACGGCTCTCGCTTCGTCGATAAAGC 418
||| |||||||||||||||||||| ||||||| |||||||||||||| |||||||||| |
Sbjct 356 TTCTTTCTCCTTCTTCCGCCCTATTGTCGACGCAAACGGCTCTCGCTCCGTCGATAAATC 415
Query 419 ACTCTCCGAAGCTTTCTTATGCGCTGCTAAGATCGCTGCTTCTTCAATGAACAAAGCTGT 478
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 416 TCTCTCCCAAGCTTTCTTATGCGCCGCTAAGATCGCTGCTTCTTCAATGAACAAAGCTGT 475
Query 479 TATGACCGCTAAGTGTGAAACTGACCGGAGAGGAAAAGAAGCTGCTTTGGCGAAGAAGAG 538
|||| ||||||| ||||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 476 TATGGCCGCTAAATGTGATGCTGATCGGAGAGGAAGAGAAGCTGCTTTGGCGAAGAAGAG 535
Query 539 AGCTCGCGAGGCTCTTGAGCAGGTTGTCATGCTTGATGCCAAGGAGAAGGCAAGATCGGT 598
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 536 AGCTCGCGAGGCTCTTGAGCATGTTGTCATGCTTGACGCCAAGGAGAAGGCAAGATCGGT 595
Query 599 TGTTCCTAAGCTTAAAGAAGCTCCCGTTGATCAGAAACCAAAACTGAGTCCTGCATCAAA 658
|||||| ||||| ||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 596 TGTTCCAAAGCTGAAAGAAGCTTCCGTTGATCAGAAACCAAAACTCAGTCCTGCATCAAA 655
Query 659 TGGTGCTACTGTGAAAGAAACAGAGAGCTCTG-AT--ACTACTACTACTCCTACGACGAC 715
||||| |||||||||||||||||||||||||| | |||||||||||| |||| || ||
Sbjct 656 TGGTGATACTGTGAAAGAAACAGAGAGCTCTGCAACCACTACTACTACTACTACTACTAC 715
Query 716 TACGACTA--A-GAACAATGGAGGTACAGAGAAACAGAATCCGGCAACACAATTGGCTAA 772
|| |||| | |||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 716 TAATACTACCAAGAACAATGGAGGCACAGAGAAACAGAATCCGGCAATGCAATTGGCTAA 775
Query 773 AGTTAAGCAAGAAGCTGATGCGTCTAGGTGAAATCAATGTTTAAAGTTTCAGGTACCACA 832
||||||||||||||||||||| ||||| | || ||| || || | || |
Sbjct 776 AGTTAAGCAAGAAGCTGATGCCTCTAGAT-AA--CAAC-TTCAA-G---CA--T------ 819
Query 833 ACTTCAAGCATTTCGGCTTCTGATGAAAGAAA-CTGATTCTGATTCGATCTCAATGTAGA 891
||| | | | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 820 --TTC--G--T--C---TTCTGATGAAAGAAAGCTGATTCTGATTCGATCTCAATGTAGA 868
Query 892 TTGTAAGTTATC-CTTTTTTGGTTTGTTCATGTTTTTC-G-ATCGTTTAC--TATGTGTA 946
||||| |||||| ||||||| ||||||||||||||||| | ||||||||| ||||||||
Sbjct 869 TTGTACGTTATCTCTTTTTTTGTTTGTTCATGTTTTTCTGGATCGTTTACGCTATGTGTA 928
Query 947 GGAATCTTTGGAACTGTGAAGTGtttttttA---A-AATAAATCATATGTTTCTGTGTCT 1002
||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 929 GGAATCTCTGGAACTGTGAAGTGTTTTTTTTTTTATAATAAATCATATGTTTCTGTGTCT 988
Query 1003 TTACAAAAGCCACACTGTGTAACATAGCCTGGTGATGGTTTTAGTTACCGGTGATCGTCC 1062
|| ||||||||||||||||||||||||||||||||||||||||| | ||| | || |
Sbjct 989 G-ACTAAAGCCACACTGTGTAACATAGCCTGGTGATGGTTTTAGTTGCTGGT--T-GTTC 1044
Query 1063 AA---GTTGTGATGTGATTCTTGTT 1084
|| ||||||||||||||||||||
Sbjct 1045 AAATTGTTGTGATGTGATTCTTGTT 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41172750360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5