BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09530.1
Length=1957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471048 jgi|Araly1|471048|fgenesh2_kg.1__1002__AT1G09530.2 2283 0.0
> Ahg471048 jgi|Araly1|471048|fgenesh2_kg.1__1002__AT1G09530.2
Length=1882
Score = 2283 bits (1236), Expect = 0.0
Identities = 1545/1686 (92%), Gaps = 53/1686 (3%)
Strand=Plus/Plus
Query 184 AAGATTGTTTCTGTAAAACGCAACACCATGCCTCTGTTTGAGCTTTTCAGGCTCACCAAA 243
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 199 AAGATTGTCTCTGTAAAACGCAACACCATGCCTCTGTTTGAGCTTTTCAGGCTCACCCAA 258
Query 244 GCTAAGCTTGAATCTGCTCAAGACAGGAACCCTTCTCCACCTGTAGATGAAGTTGTGGAG 303
||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 259 GCTAACCTCGAATCTGCTCAAGACAACAACCCTTCTCCACCTGTAGATGAAGTTGTGGAA 318
Query 304 CTGGTGTGGGAAAATGGTCAGATATCAACTCAAAGTCAGTCAAGTAGATCGAGGAACATT 363
|| ||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||
Sbjct 319 CTAGTGTGGGAAAACGGTCAGATTTCAACTCAGAGTCAGTCAAGCAGGTCGAGGAACATT 378
Query 364 CCTCCACCACAAGCAAACTCTTCTAGAGCTAGAGAGATTGGAAATGGCTCAAAGACGACT 423
|||||||||||||||||||||||||| |||||||||||||| |||||||||||| | ||
Sbjct 379 CCTCCACCACAAGCAAACTCTTCTAGGGCTAGAGAGATTGGGAATGGCTCAAAGGCAACG 438
Query 424 ATGGTGGACGAGATCCCTATGTCAGTGCCATCACTAATGACGGGTTTGAGTCAAGACGAT 483
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 ATGGTGGATGAGATCCCTATGTCAGTGCCATCACTAATGACGGGTTTGAGTCAAGACGAT 498
Query 484 GACTTTGTTCCATGGTTGAATCATCATCCCTCCCTTGATGGATATTGCTCTGATTTCTTG 543
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 499 GACTTTGTTCCATGGTTGAATCATCATCCATCCCTCGATGGATATTGTTCTGATTTCTTG 558
Query 544 CGTGATGTGTCGTCTCCTGTTACTGTCAACGAGCAAGAGAGTGATATGGCGGTAAACCAA 603
||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 559 CGTGA--TGT-GTCTCCTGTTACTGTCAACGAGCAAGAGAGCGATATGGCGGTAAATCAA 615
Query 604 ACTGCTTTCCCGTTGTTTCAGAGAAGAAAGGATGGCAATGAATCAGCTCCTGCTGCTTCT 663
|||| |||||||||||||||||||||||| |||||||||| |||||| |||||||||||
Sbjct 616 ACTGTTTTCCCGTTGTTTCAGAGAAGAAACAATGGCAATGAGTCAGCTTCTGCTGCTTCT 675
Query 664 TCGTCGCAGTATAACGGTTTCCAATCGCATTCTCTGTATGGAAGTGATAGAGCTAGAGAT 723
|| ||||||||||||||||| ||||| || ||| |||||||||||||||||||||| |||
Sbjct 676 TCATCGCAGTATAACGGTTTTCAATCTCAATCTGTGTATGGAAGTGATAGAGCTAGGGAT 735
Query 724 CTTCCTAGCCAACAAACCAATCCGGATCGGTTTACTCAGACGCAGGAACCACTAATTAC- 782
| | |||||| |||| |||| ||||||| ||||||||||||||||||||||||| | |
Sbjct 736 CCTGCTAGCCTACAAGCCAAACCGGATCAATTTACTCAGACGCAGGAACCACTAA-TCCT 794
Query 783 TAGTAACAAGCCTAGTTTGGTCAACTTTTCACATTTCTTACGCCCTGCAACTTTTGCGAA 842
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 795 TAGTAACAAGCCCAGTTTGGTCAACTTTTCGCATTTCTTACGCCCTGCAACTTTGGCTAA 854
Query 843 GACTACTAATAATAACCTTCATGACACTAAAGAAAAGAGTCCTCAAAGCCCGCCAAATGT 902
| || |||||||| ||||| || |||||| |||||||||||||||||||| |||||
Sbjct 855 G---AC---TAATAACCCTCATGGCAGTAAAGAGAAGAGTCCTCAAAGCCCGCCGAATGT 908
Query 903 GTTTCAGACCAGAGTTCTTGGAGCTAAAGACTCTGAAGATAAGGTTCTTAACGAGTCTGT 962
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 909 GTTTCAGACCAGAGTTCTTGGAGCTAAGGACTCTGAAGATAAGGTTCTTAACGAGTCTGT 968
Query 963 TGCTTCTGCTACGCCTAAAGATAACCAAAAGGCTTGCC-TAATATCAGAGGACTCATGTA 1021
||||||||||| |||||| ||||||||||||||||||| || || |||||||||||||||
Sbjct 969 TGCTTCTGCTATGCCTAAGGATAACCAAAAGGCTTGCCTTATTA-CAGAGGACTCATGTA 1027
Query 1022 GAAAAGACCAAGAGAGTGAAAAAGCAGTTGTATGTTCTTCTGTTGGCTCGGGTAATAGTC 1081
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1028 GAAAAGACCAAGAGAGTGAAAAGGCAGTTGTGTGTTCTTCTGTTGGCTCGGGTAATAGTC 1087
Query 1082 TCGATGGCCCATCCGAAAGTCCTTCACTTTCTTTAAAGAGAAAGCATTCGAATATTCAAG 1141
| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1088 TTGATGGCCCATCCGAAAGTCCTTCACTTTCTTTAAAGAGAAAGCGTTCGGATATTCAAG 1147
Query 1142 ACATTGAC--T-GTCATAGTGAAGATGTGGAAGAAGAATCAGGAGATGGAAGAAAGGAAG 1198
|||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1148 ACATTGACTGTCGTCATAGTGAAGATGTTGAAGAAGAATCAGGAGATGGAAGAAAGGAAG 1207
Query 1199 CAGGTCCATCTCGAACGGGTTTGGGTTCAAAGAGAAGCCGCTCTGCAGAAGTGCATAATC 1258
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 CAGGTCCTTCTCGAACGGGTTTGGGTTCAAAGAGAAGCCGCTCTGCAGAAGTGCATAATC 1267
Query 1259 TGTCTGAAAGGAGACGGCGTGATAGGATCAACGAGAAGATGCGTGCCCTGCAAGAACTCA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 TGTCTGAAAGGAGACGGCGTGATAGGATCAACGAGAAGATGCGTGCCCTGCAAGAACTCA 1327
Query 1319 TTCCAAACTGTAACAAGGTGGACAAAGCTTCGATGCTAGATGAAGCCATCGAGTATCTCA 1378
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 TTCCAAACTGCAACAAGGTGGACAAAGCTTCGATGCTAGATGAAGCCATCGAGTATCTCA 1387
Query 1379 AGTCACTCCAACTTCAAGTGCAGATCATGTCAATGGCGTCTGGTTACTATC-TGCCACCG 1437
|||| |||||||||||||| ||||| ||||| ||||||||||||||||| | ||||||||
Sbjct 1388 AGTCCCTCCAACTTCAAGTACAGATTATGTCGATGGCGTCTGGTTACTA-CATGCCACCG 1446
Query 1438 GCGGTTATGTTCCCACCGGGTATGGGGCATTACCCGGCAGCAGCTGCTGCAATGGCAATG 1497
| |||||||||||| ||||||||||| |||||||| ||| |||||||||
Sbjct 1447 G---TTATGTTCCCACATGGTATGGGGCACTACCCGGC------TGC---AATGGCAATA 1494
Query 1498 GGTATGGGAATGCCTTATGCAATGGGCTTGCCTGATTTGAGCCGTGGTGGTTCATCGGTT 1557
|| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 1495 GGCATGGGAATGCCTTATGCAATGGGCTTGCCTGATTTAAGCCGGGGTGGATCATCGGTT 1554
Query 1558 AACCACGGACCACAGTTCCAAGTCTCGGGGATGCAACAACAACCAGTGGCGATGG-GTAT 1616
|||||||||||||||||||||||||||||| ||||||||| | ||||||||||| | ||
Sbjct 1555 AACCACGGACCACAGTTCCAAGTCTCGGGGTTGCAACAAC--C-AGTGGCGATGGCG-AT 1610
Query 1617 TCCACGTGTCTCTGGTGGTGGTATCTTTGCCG-GTTCTTCGACGAT-----TG-----G- 1664
|||||||||||||||||||||| ||||||| | || |||| ||||| || |
Sbjct 1611 TCCACGTGTCTCTGGTGGTGGTTTCTTTGCAGAGT-CTTCAACGATGGAGATGAATAAGA 1669
Query 1665 -C-A-A-TGGCTCGACTAGAGATTTATCTGGTTCTAAAGATCAAACAACGACGAATAACA 1720
| | | ||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1670 GCGACAATGGTTCGACTAGAGATTTATCGGGTTCTAAAGATCAAACAACGACGAATAACA 1729
Query 1721 ACAGTAACTTGAAACCAATAAAGAGAAAACAGGGGTCTTCTGATCAGTTTTGTGGATCGT 1780
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1730 ACAGTAACTTGAAACCAATAAAGAGAAAACATGCGTCTTCTGATCAGTTTTGTGGATCGT 1789
Query 1781 CGTGACATAAATACAAACTTATGAACTGATGTATTGTTTAT-TTGTAGCATTCAAACAAA 1839
| ||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct 1790 CATGACATAAATACAAACTGAAGAACTGATGTATTGTTTATCTTGTAGCATTCAAACAAA 1849
Query 1840 TCTATT 1845
|| |||
Sbjct 1850 TCAATT 1855
Score = 176 bits (95), Expect = 5e-43
Identities = 114/123 (93%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 40 tccgtcttgtgcgtcgatttgtctccatctccttctctctccGCCTACTTTCTCAGGACT 99
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 1 TCCGTCTTGTGCGTCGATTTGTCTCCATCTCC--CTCTCTCCGCCTACTTTCTCAAGATT 58
Query 100 ACTCCAATTCGCCGACTTTTTCTCCTCTGTTCTCTGCATTTGGATTGATGCCACTTTAAT 159
|||||||||||||| ||| ||||||||||||||||||||||||||||||| || |||| |
Sbjct 59 ACTCCAATTCGCCGTCTTCTTCTCCTCTGTTCTCTGCATTTGGATTGATGTCATTTTAGT 118
Query 160 ACT 162
|||
Sbjct 119 ACT 121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73552263095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5