BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09540.1
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919710 jgi|Araly1|919710|scaffold_100991.1 1775 0.0
> Ahg919710 jgi|Araly1|919710|scaffold_100991.1
Length=1144
Score = 1775 bits (961), Expect = 0.0
Identities = 1089/1150 (95%), Gaps = 12/1150 (1%)
Strand=Plus/Plus
Query 155 TTGCAGCTGTGAATAACTAAATGGGGAGACATTCTTGCTGTTACAAACAAAAGCTGAGGA 214
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TTGCAGCTGTGTATAACTAAATGGGGAGACATTCTTGCTGTTACAAACAAAAACTGAGGA 60
Query 215 AAGGGCTTTGGTCTCCTGAAGAAGACGAGAAGCTTCTTACTCACATCACCAATCACGGCC 274
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 AAGGGCTTTGGTCTCCTGAAGAAGATGAGAAGCTTCTTACTCACATCACCAATCACGGCC 120
Query 275 ATGGCTGCTGGAGCTCTGTCCCTAAACTCGCTGGTTTGCAGAGATGTGGGAAGAGTTGTC 334
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGGCTGCTGGAGCTCTGTCCCTAAACTCGCTGGTTTGCAGAGATGTGGGAAGAGTTGTA 180
Query 335 GACTAAGATGGATCAATTACTTGAGACCTGATTTAAAGAGAGGAGCTTTTTCTCCTGAAG 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 181 GACTAAGATGGATCAATTACTTGAGACCTGATTTAAAGAGAGGAGCTTTTTCTCCAGAGG 240
Query 395 AAGAGAATCTCATCGTCGAACTTCATGCCGTCCTTGGAAACAGATGGTCACAGATTGCGT 454
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 241 AGGAGAATCTCATCGTCGAGCTTCATGCCGTCCTCGGAAACAGATGGTCACAGATTGCGT 300
Query 455 CAAGGCTTCCGGGTAGAACCGACAACGAGATCAAGAATCTATGGAACTCAAGCATCAAGA 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAAGGCTTCCGGGTAGAACCGACAACGAGATCAAGAATCTATGGAACTCAAGCATCAAGA 360
Query 515 AGAAACTGAAACAAAGAGGCATTGACCCAAACACACACAAGCCCATCTCTGAAGTTGAGA 574
|||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||
Sbjct 361 AGAAACTGAAACAAAGAGGCATTGACCCAAACACACACAAACCCATCTCCGAACTTGAGA 420
Query 575 GTTTTAGCGACAAAGACAAACCAACAACAAGCAACAACAAAAGAAGCGGTAACGATCACA 634
| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 421 GCTTTAGCGACAAAGACAAACCAACAACAAGCAACAACAAAATAAGCGGTAACGACCACA 480
Query 635 AGTCTCCTAGTTCCTCTTCTGCGACTAACCAAGACTTCTTCCTCGAAAGGCCATCTGATT 694
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 481 AGTCTCCTAGTTCCTCTTCTGCGACTAACCAAGACTTCTTCATAGAAAGGCCATCTGAAT 540
Query 695 TATCCGACTACTTCGGATTTCAGAAGCTTAACTTCAACTCCAATCTAGGACTCTCTGTTA 754
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 541 TCTCCGACTACTTCGGATTTCAGAAGCTTAACTTCAACTCCAATCTCGGACTCTCTGTGA 600
Query 755 CAACTGATTCTTCACTCTGCTCGATGATTCCGCCGCAGTTTAGCCCCGGGAACATGGTTG 814
|||||||| ||||||||||||| |||||||| |||||||||||| |||| ||||||||||
Sbjct 601 CAACTGATACTTCACTCTGCTCAATGATTCCACCGCAGTTTAGCTCCGGAAACATGGTTG 660
Query 815 GTTCTGTCCTTCAGACACCAGTATGCGTAAAGCCCTCGATTAGTCTTCCTCCCGACAACA 874
|||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||
Sbjct 661 GTTCTGTCTTTCAGACACCAGTATGCGTAAAGCCCTCAATTAATCTTCCTCCTGACAACA 720
Query 875 ACAGTTCGAGTCCTATCTCCGGAGGAGATCATGTGAAATTGGCTGCACCAAACTGGGAAT 934
||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ACAGTTCAAGTCCGGTCTCTGGAGGAGATCATGTGAAATTGGCTGCACCAAACTGGGAAT 780
Query 935 TTCAGACAAACAACAATAATACCTCAAATTTCTTCGACAATGGCGGATTCTCATGGTCTA 994
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct 781 TTCAGACAAACAACAACA---CCTCAAATTTCTTCGACAATGGCGGATTCTCATGGTCAA 837
Query 995 TCCCAAATTCTTCTACTTCTTCTTCACAAGTCAAACCAAATCATAACTTCGAAGAAATAA 1054
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 838 TCCCAAATTCTTCTACTTCTTCTTCACAAGTCAAACCAAATCATAACTTGGAAGAAATAA 897
Query 1055 AATGGTCAGAGTATTTGAACACACCGTTCTTCATAGGGAGTACTGTACAGAGTCAAACCT 1114
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 898 AATGGTCAGAGTATTTGAACACACCGTTCTTCATAGGGAACACTGTACAGAGTCAAAGCT 957
Query 1115 CTCAACCAATCTACATCAAATCAGAAACAGATTACTTAGCCAATGTTTCAAACATGACAG 1174
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 958 CTCAACCAATCTACATTAAATCAGAGACAGATTACTTAGCCAATGTTTCAAACATGACAG 1017
Query 1175 ATCCTTGGAGCCAAA---A---CGAGAACTTGGGCACAACTGAAACTAGTGACGTGTTCT 1228
||||||||| ||||| | ||| |||||||||||| |||| |||||||||||||||
Sbjct 1018 ATCCTTGGACCCAAACCCAAAACGAAAACTTGGGCACAGCTGATACTAGTGACGTGTTCG 1077
Query 1229 CCAAGGATCTTCAGAGAATGGCCGTCTCTTTTGGTCAGTCCctttagcttttttctttct 1288
|||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||| |
Sbjct 1078 CCAAGGATCTTCAGAGAATGGCCGTCTCATTTGGTCAGTCCCTTTAGTTTTTTT-TTT-T 1135
Query 1289 ttctttctta 1298
|| |||||||
Sbjct 1136 TT-TTTCTTA 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56068840640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5