BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09550.1
Length=1240
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311997 jgi|Araly1|311997|fgenesh1_pm.C_scaffold_1000777 1668 0.0
> Ahg311997 jgi|Araly1|311997|fgenesh1_pm.C_scaffold_1000777
Length=1092
Score = 1668 bits (903), Expect = 0.0
Identities = 1026/1086 (94%), Gaps = 6/1086 (1%)
Strand=Plus/Plus
Query 158 TTCAACGAGTCCAATGGAACAAATGCAAATGTCCTGATGGTAGGACTCACGCTCGTCCAA 217
|||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 10 TTCAACGATTTCAATGGAACAAATGCAAATGTCCTGATGGTAGGACTCACTCTCGTCCAA 69
Query 218 GCCGCTGCTGCTAAAGGAGCGGTGTGTCTGGATGGGTCAGTGCCTGGATATCATTTGTGT 277
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 70 GCCGCTGCTGCTAAAGGAGCGGTGTGTCTGGATGGGTCAGTGCCTGGATATCATTTGTAT 129
Query 278 CGCGGGTATGGTTCAGGAGCAAACAACTGGATCATTCAGTTGCAGGGAGGTGCATGGTGT 337
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 130 CGCGGGTATGGTTCAGGAGCTAACAACTGGATCATTCAGTTGCAGGGAGGTGCATGGTGT 189
Query 338 GACAGCATACAAAACTGTCAGAGCCGTAAAGGGAGTGGTTATGGATCATCTACCTTAATG 397
|||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 190 GACAGCATACAAAATTGTCAGAACCGTAAAAGGAGTGGTTATGGATCATCTACCTTAATG 249
Query 398 GAGAAAGAGTTGGCATTTTTAGGATTACTAAGCAATAAAGCCGCTGAAAATCCAGACTTT 457
||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 250 GAGAAAGAGGTGGCGTTTTTAGGATTACTAAGCAATAAAGCGGCTGAAAATCCAGACTTT 309
Query 458 TACAATTGGAACAAAGTAAAAGTCCGGTATTGTGATGGTGCATCCTTTGA-TGGTGACAG 516
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 310 TACAATTGGAACAAAGTAAAAGTCCGGTATTGTGATGGTGCATCCTTT-AGCGGTGATAG 368
Query 517 CGAAAACAAGGCGGCACAACTTCAGTATAGAGGAAAGCGTATATTTTTAGCTGTCATGGA 576
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 369 CGAAAACAAGGCGGCGCAACTTCAGTTTAGAGGAAAGCGTATATTTTTAGCTGTCATGGA 428
Query 577 AGATTTGATGGAAAAGGGAATGCGTCAGGCAAAACAGGCTTTGCTCAGCGGATGTTCTTC 636
||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 429 AGATTTGATGGCACAGGGAATGCGTCAGGCAAAACAGGCTTTGCTCAACGGATGTTCTGC 488
Query 637 TGGGGGTCTTTCTGCCATTTTACGATGCGATGATTTCAATAACTTGTTTCCTCCTACCAC 696
||||||||||| || |||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 489 CGGGGGTCTTTCAGCGATTTTACGATGCGATGATTTCAGTAATTTGTTTCCTCCTACCAC 548
Query 697 CACAGTAAAATGCATGAGCGATGCTGGCTTCTTCCTCGACGCCGTTGATGTATCTGGAGG 756
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 CAAAGTAAAATGCATGAGCGATGCTGGCTTCTTCCTCGACGCCGTTGATGTATCTGGAGG 608
Query 757 TCATTCTTTAAGGCGTATGTATTCTGGTGTTGTGAACACTCAGGGTTTGCAAAACACACT 816
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 609 TCATTCTTTAAGGCGTATGTATTCTGGTGTCGTGAACACTCAGGGTTTGCAAAACACTCT 668
Query 817 TCCTCCCACTTGTACAAGCCATATCAAACCATTTTTGTGTTTTTTCCCTCAATACATAAT 876
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 669 TCCTCCCACTTGTACAAGCCATATTAAACCAACTTTGTGTTTTTTCCCTCAATACATAAT 728
Query 877 CAACCAAGTCAAGACCCCGTTGTTTATTCTCAACTCGGGATTTGATTCGTGGCAGATTGG 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 CAACCAAGTCAAGACCCCGTTGTTTATTCTCAACTCGGGATTTGATTCGTGGCAGATTGG 788
Query 937 AAATAGTTTAGCCCCACCATCTGCTGAT--AAGAGTGGCAGTTGGCATAACTGCAGTTTT 994
|||||||||||| ||||||||||||||| || | ||| ||||||| ||||||||| |
Sbjct 789 AAATAGTTTAGCTCCACCATCTGCTGATCCAA-A-TGGTAGTTGGCGTAACTGCAGCTCC 846
Query 995 AGCTTTAGGTGCACTGCCTCTCAGATGCACTTCTTAGAAGGTTTCAAGATGAGCATGTTA 1054
||||| ||||||||||||||||||| ||| ||||| || |||||||||||||||||||||
Sbjct 847 AGCTTCAGGTGCACTGCCTCTCAGAAGCAGTTCTTGGATGGTTTCAAGATGAGCATGTTA 906
Query 1055 GATGCGTTGAAGACCTTTTCGAAGTTTAGCAAGAATGGAGTTTTAATTACCTCGGGATGG 1114
||||| ||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||
Sbjct 907 AATGCGGTGAAGACCTTTTCCAAGTTTAGCAAGAACGGAGTGTTAATTACCTCTGGATGG 966
Query 1115 GCTCATTGTCAAGCGGAGAGACAAGATACTTGGTTTCCTGGATACTCTGGAGCGGGCAAA 1174
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 967 GCTCATTGTCAAGCGGAGAGACAAGATACTTGGTTTCCTGGAAACTCTGGTGCGGGTAAA 1026
Query 1175 GCTAAGGGGATTGCTGTGGCTGTTGGAGATTGGTATTTCGAAAGAACAAAACAGAATAGC 1234
| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||
Sbjct 1027 GTTAAGGGGATTGCTGTGGCTGTTGGAGATTGGTATTTCGAAAGAATAAAAAAGAAAAGC 1086
Query 1235 TCATAG 1240
||||||
Sbjct 1087 TCATAG 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46319344155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5