BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09560.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910662 jgi|Araly1|910662|Al_scaffold_0001_916 1053 0.0
Ahg891850 jgi|Araly1|891850|Al_scaffold_0007_3836 65.8 6e-10
Ahg891847 jgi|Araly1|891847|Al_scaffold_0007_3833 65.8 6e-10
Ahg890875 jgi|Araly1|890875|Al_scaffold_0007_2861 63.9 2e-09
> Ahg910662 jgi|Araly1|910662|Al_scaffold_0001_916
Length=660
Score = 1053 bits (570), Expect = 0.0
Identities = 631/661 (95%), Gaps = 2/661 (0%)
Strand=Plus/Plus
Query 58 ATGGCTTCACCAActcttactctcctcctcctcctcaccaccgtctccttcttcatctcc 117
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGGCTTCACCAACTCAAACTCTCCTCCTCCTCCTCACCACCGTCTTCTTCTTCATCTCC 60
Query 118 tcctccGCAGATCCTGACATGCTTCAAGATCTCTGCGTCGCTGATCTTCCCTCTGGAATC 177
| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GCTTCCGCAGATCCGGACATGCTTCAAGATCTCTGCGTTGCTGATCTTCCCTCTGGAATC 120
Query 178 AAAATCAATGGCTTCCCTTGCAAAGACGCAGCTACAGTCACATCAGCCGATTTCTTCTCA 237
|| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 121 AAGATCAATGGCTTCCCTTGTAAAGACGCAGCTACAGTCACATCGGCTGATTTCTTCTCA 180
Query 238 CAAGGATTAGCTAAACCAGGTCTTACCAACAACACATTCGGTGCCTTAGTCACAGGAGCT 297
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 CAAGGATTAGCTAATCCAGGTCTTACCAACAACACATTCGGTGCCTTGGTCACAGGAGCT 240
Query 298 AACGTTATGACAATCCCAGGACTCAACACACTTGGTGTCTCCCTCTCTCGTATCGACTAC 357
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 241 AACGTTATGACAATCCCAGGACTCAACACACTCGGTGTCTCTCTCTCTCGTATCGACTAC 300
Query 358 GCACCAGGAGGCTTAAACCCACCTCACACCCACCCACGTGCCACTGAGGTCGT-TTTCGT 416
||||| ||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||
Sbjct 301 GCACCCGGAGGCTTAAACCCACCTCACACCCACCCTCGTGCCACTGAAATCGTCTTT-GT 359
Query 417 CCTCGAAGGAACACTTGACGTTGGGTTTCTCACTACTGCCAATAAGCTAATCTCTCAATC 476
|||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||
Sbjct 360 CCTCGAAGGAACACTTGATGTTGGGTTCCTCACTACGGCCAATAAGCTCATCTCTCAATC 419
Query 477 TCTCAAGAAAGGAGATGTCTTTGCTTTCCCCAAAGGACTTGTCCATTTCCAGAAGAACAA 536
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 TCTCAAGAAAGGAGATGTCTTTGCTTTCCCTAAAGGACTTGTCCATTTCCAGAAGAACAA 479
Query 537 TGGTGATGTCCCTGCTTCTGTTATTGCAGCTTTCAATAGTCAGCTTCCTGGAACTCAATC 596
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGGTCATGTTCCTGCTTCTGTTATTGCAGCTTTCAATAGTCAGCTTCCTGGAACTCAATC 539
Query 597 TCTTGGTGCTACTTTGTTTGGTTCTACTCCTCCTGTTCCTGACAACATCTTGGCTCAAGC 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCTTGGTGCTACTTTGTTTGGTTCTACTCCTCCTGTTCCTGACAACATCTTGGCTCAAGC 599
Query 657 CTTTCAGACTTCTCCAGGAACTGTTAAACACATCAAATCCAAGTTCCAACCCAAGAAATG 716
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTTTCAGACCTCTTCAGGAACTGTTAAACACATCAAATCCAAGTTCCAACCCAAGAAATG 659
Query 717 A 717
|
Sbjct 660 A 660
> Ahg891850 jgi|Araly1|891850|Al_scaffold_0007_3836
Length=672
Score = 65.8 bits (35), Expect = 6e-10
Identities = 66/80 (83%), Gaps = 6/80 (8%)
Strand=Plus/Plus
Query 373 AACCCACCTCACACCCACCCACGTGCCACTGAGGTCGTT--TTCGTCCT-CGAAGGAACA 429
||||||||||||||||||||||||||||| ||| || || || ||| | ||||||||
Sbjct 328 AACCCACCTCACACCCACCCACGTGCCACGGAGATC-TTGGTT-GTCGAAC-AAGGAACA 384
Query 430 CTTGACGTTGGGTTTCTCAC 449
||| ||| |||||| ||||
Sbjct 385 CTTCTCGTAGGGTTTGTCAC 404
> Ahg891847 jgi|Araly1|891847|Al_scaffold_0007_3833
Length=672
Score = 65.8 bits (35), Expect = 6e-10
Identities = 66/80 (83%), Gaps = 6/80 (8%)
Strand=Plus/Plus
Query 373 AACCCACCTCACACCCACCCACGTGCCACTGAGGTCGTT--TTCGTCCT-CGAAGGAACA 429
||||||||||||||||||||||||||||| ||| || || || ||| | ||||||||
Sbjct 328 AACCCACCTCACACCCACCCACGTGCCACGGAGATC-TTGGTT-GTCGAAC-AAGGAACA 384
Query 430 CTTGACGTTGGGTTTCTCAC 449
||| ||| |||||| ||||
Sbjct 385 CTTCTCGTAGGGTTTGTCAC 404
> Ahg890875 jgi|Araly1|890875|Al_scaffold_0007_2861
Length=669
Score = 63.9 bits (34), Expect = 2e-09
Identities = 76/95 (80%), Gaps = 8/95 (8%)
Strand=Plus/Plus
Query 315 AGGACTCAACACACTTGGTGTCTCCCT-CTCTCGTATCGACTACGCA-CCAGGA-GGCTT 371
|||| | ||||| ||||| |||| || | |||||| ||||| ||| ||| | || |
Sbjct 270 AGGATTAAACACCCTTGGAATCTCACTAGT-TCGTATAGACTATGCACCCA--ACGG-TC 325
Query 372 A-AACCCACCTCACACCCACCCACGTGCCACTGAG 405
| ||||||||||||||||||||||||||||| |||
Sbjct 326 AGAACCCACCTCACACCCACCCACGTGCCACCGAG 360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5