BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09575.1
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910664 jgi|Araly1|910664|Al_scaffold_0001_918 1404 0.0
Ahg474846 jgi|Araly1|474846|fgenesh2_kg.1__4800__AT1G57610.2 512 2e-144
> Ahg910664 jgi|Araly1|910664|Al_scaffold_0001_918
Length=882
Score = 1404 bits (760), Expect = 0.0
Identities = 844/884 (95%), Gaps = 7/884 (1%)
Strand=Plus/Plus
Query 94 ATGTGGTCAATGGGTTTGATAAGGCGTACGGCAATGTCCAATGCCATTAGAGCTTCTTCG 153
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGTGGTCAATGGGTTTGATAAGGCGTACGGCAATGTCCAGCGCCATTAGAGCTTCTTCG 60
Query 154 CAAAGGACATGGCTTGGTCACGGTGGATTAAGAAGCTGCGTCACCGTCAAAACACCGTCG 213
|||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CAAAGGACATGGCTTGGTAATGGTGGATTAAGAAGCTGCGTCACCGTCAAAACTCCGTCG 120
Query 214 -GA--GGATGAAGAGGAGAAGAAGAAAGAGATAACTATAGCGGAAGCGAAGAAGCTAATG 270
| ||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCATCGGAGGAGGAAGAGAAGAAGAAAGAGATAACTATAGCGGAAGCGAAGAAGCTAATG 180
Query 271 AGGCTTGTGAATGTTGAAGACATGAAGAAGAAGCTTGTTGGTGTGGCTGATAGAGATGTT 330
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 181 AGGCTTGTGAATGTTGAAGACATGAAGAAGAAGCTTGTTGGTATAGCTGATAGAGATGTC 240
Query 331 GTCTCTTACTCTACACTTTTAGAAGCTTCTCAAGGAATGGGTATCGCTAGATCTCCCGAT 390
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GTCCCTTACACTACACTTTTAGAAGCTTCTCAAGGAATGGGTATCGCTAGATCTCCTGAT 300
Query 391 GAAGCTCATGTCTTTGCTCGTGTTCTTGACGATGCTGGCGTTGTCTTGATCTTTCGTGAT 450
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 301 GAAGCTCATATCTTTGCTCGTGTTCTTGACGATGCCGGCGTTGTCTTGATCTTTCGAGAT 360
Query 451 AAAGTCTATCTTCACCCAGACAAGGTGGTGGATCTGATTAGAAGAGCGATGCCTTTGGAC 510
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAAGTCTTTCTTCACCCAGACAAGGTGGTGGATCTGATTAGAAGAGCGATGCCTTTGGAA 420
Query 511 CAGAATCCAGAGGAAGATCAAATCAAGGAAGAATTCAACAAA-TTGAGAATCATGAAAGA 569
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 421 CAGAATCCAGAGGAAGATCAAATCAAGGAAGAATTCAACAAACTT-AGAATCATGAAAGA 479
Query 570 AGAGATTGATGTTTTGGCTCATAGACAAGTGAGGAAGATTCTTTGGTGTGGTTTAGCTAC 629
|||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 AGAGATTGATGTGTTAGCGCATAGACAAGTGAGGAAGATTCTTTGGTGCGGTTTAGCTAC 539
Query 630 TTCGATGGTTCAAATTGGACTCTTTTTTAGATTAACTTTCTGGGAATTCTCATGGGATGT 689
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 540 TTCGATGGTTCAAATTGGGCTCTTTTTTAGACTAACTTTCTGGGAATTCTCATGGGATGT 599
Query 690 GATGGAACCAATCACTTTCTTCGCTACAGCGACTGGAATCATTGTGGGTTATGCTTATTT 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GATGGAACCAATCACTTTCTTCGCTACAGCGACTGGAATCATTGTGGGTTATGCTTATTT 659
Query 750 CTTGATGACTTCGAGAGATCCGACATATCAGGATTTCATGAAGAGGCTCTTCTTGTCGAG 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CTTGATGACTTCGAGAGATCCGACATATCAGGATTTCATGAAGAGGCTCTTCTTGTCGAG 719
Query 810 ACAGAGGAAGTTGTTGAAGAGTCATAAGTTTGACTGCGAGAGGTTTAAGGAATTGGAGAG 869
|||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||
Sbjct 720 ACAGAGGAAGTTGTTGAAAAGTCATAAGTTTGATTGTGATAGGTTTAAGGAATTGGAGAG 779
Query 870 GTTATT-TAAAATGACGTCGTCTTGTCATGCAGCTGCGTCTATAAGGAATCGTGTTGGAT 928
| | || |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAT-TTGTAAAATGACGTCATCTTGTCATGCAGCTGCGTCTATAAGGAATCGTGTTGGAT 838
Query 929 TAGAACTTGATCTCGAGGATGCTTTGCAGAGTCGCAGGGACTGA 972
||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 839 TAGAACTTGATCTCGAGGATGCTTTGCAGAGTCGCAGAGACTGA 882
> Ahg474846 jgi|Araly1|474846|fgenesh2_kg.1__4800__AT1G57610.2
Length=1247
Score = 512 bits (277), Expect = 2e-144
Identities = 623/780 (80%), Gaps = 63/780 (8%)
Strand=Plus/Plus
Query 219 TGAAGAGGAGAAGAAGAAAGAGATAACTATAG-CGGAAGCGAAGAAGCTAATGAGGCTT- 276
|||||| ||| | || ||||| || ||| | | |||||| |||||| |||||| | ||
Sbjct 302 TGAAGATGAG-A-AA-AAAGATATGACTGT-GATGGAAGCTAAGAAGTTAATGA-GATTA 356
Query 277 GTGAATGTTGAAGACATGAAGAAGAAGCTTGTTGGTGTG-GCTGATAGAGATGTTGTCTC 335
|| ||||||||||| ||||||||||||||| ||||| || | ||||| ||| | || ||
Sbjct 357 GTCAATGTTGAAGATATGAAGAAGAAGCTTATTGGTATGAG-TGATAAAGAAATGGTTTC 415
Query 336 TTACT-CTACACTT-TTAGAAGCTTCTCAAGGAATGGGTATCGCTAGATCTCCCGATGAA 393
||| | |||||||| || ||| | |||||||| | |||||||||| ||||| ||||||
Sbjct 416 TTA-TACTACACTTATT-GAATCATCTCAAGGTTTAGGTATCGCTAAATCTCTTGATGAA 473
Query 394 GCTCATGTC-TTTGCTCGTGTTCTTGACGATGCTGGCGTTGTCTTGATCTTTCGTGATAA 452
||||||| | ||||||||||||||||| |||||||| ||| | ||||| |||||||||||
Sbjct 474 GCTCATG-CTTTTGCTCGTGTTCTTGATGATGCTGGTGTTATTTTGATTTTTCGTGATAA 532
Query 453 AGTCTATCTTCACCCAGACAAGGTGGTGGATCTGATTAG-AAGAGCGA-TGCCTTT-GGA 509
|||||||||||| || | |||||||||||| |||| || ||| || | ||||||| ||
Sbjct 533 AGTCTATCTTCATCCTCATAAGGTGGTGGATTTGATAAGAAAG-GC-AGTGCCTTTAGG- 589
Query 510 CCAGAATCCAGAGGAAGATCAAATCAAG-GAAGAATTCAACAA-ATTGAGAA-TCATGAA 566
|||||||||||| ||| || || ||||| || | || | |||||| | |||||
Sbjct 590 TTTGAATCCAGAGGATGATTTGAT-TAGAGAAGAGTTTGATAAGA-TGAGAAGT-ATGAA 646
Query 567 AGAAGAGATTGATGTTTTGGCTCAT-AGACAAGTGAGGAAGATTCTTTGGTGTGGT-TTA 624
|||||||||||||| || |||||| | |||||||||||||||||| ||| ||||| ||
Sbjct 647 GGAAGAGATTGATGTGTTAGCTCATCA-ACAAGTGAGGAAGATTCTATGGGGTGGTCTTG 705
Query 625 GCTACTTCGA-TGGTTCAAATTGG-ACTCTTTTTTAGATTAAC-TTTCTGGGAATTCTCA 681
| || ||| | ||||||| ||||| | ||||| |||| ||||| ||| ||||| || ||
Sbjct 706 GTTA-TTC-AGTGGTTCAGATTGGTA-TCTTTGTTAGGTTAACGTTT-TGGGAGTTTTCT 761
Query 682 TGGGATGTGATGGAACCAATCAC-TTTCTTCGCTACAGCGACTGGAATCATTGTGGGTTA 740
|||||||||||||||||||| || ||| ||| ||||||| ||||| || |||||||||||
Sbjct 762 TGGGATGTGATGGAACCAATAACGTTT-TTCACTACAGCTACTGGGATTATTGTGGGTTA 820
Query 741 TGCTTATTTCTTGATGACTTCGAGAGATCCGACATATCAGGATTTCATGAAGAGGCTCTT 800
||||||||||||||||||||| ||||| || || ||||| ||||||||||| ||| | ||
Sbjct 821 TGCTTATTTCTTGATGACTTCTAGAGACCCAACGTATCAAGATTTCATGAAAAGGTTGTT 880
Query 801 -CTTGTCGAGACAGAGGAAGTTG-TTGAAGAGTCATAAGTTTGACTGC-GAGAGGTTTAA 857
||| || || |||||||||||| || ||||||||||||||||| || |||||||||||
Sbjct 881 TCTT-TCTAGGCAGAGGAAGTTGCTT-AAGAGTCATAAGTTTGA-TGTTGAGAGGTTTAA 937
Query 858 GGAA-TTGGAGAGGTTATTT-AA-A-A-TGAC--G-TCGTCTTGT-CATGC-A-GC---T 903
|||| ||| ||| | | | || | | || | | || |||| | | ||| | || |
Sbjct 938 GGAACTTG-AGAA-TAAGTGGAAGATAATGTCTTGCTCTTCTTCTTCGTGCCACGCAAAT 995
Query 904 GCGTCTATAAGGAATCGTGTTGGA-TTAGAACTTGATCTCGAGGATGCTTTGCAGAGTCG 962
|| || || ||||||||||||| || || |||||| | |||||| |||||||||||||
Sbjct 996 GCATCGATTCGGAATCGTGTTGGTCTT-GATCTTGATTTGGAGGATTCTTTGCAGAGTCG 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42964527459
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5