BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G09580.1 Length=921 Score E Sequences producing significant alignments: (Bits) Value Ahg471056 jgi|Araly1|471056|fgenesh2_kg.1__1010__AT1G09580.1 1230 0.0 > Ahg471056 jgi|Araly1|471056|fgenesh2_kg.1__1010__AT1G09580.1 Length=870 Score = 1230 bits (666), Expect = 0.0 Identities = 782/836 (94%), Gaps = 16/836 (2%) Strand=Plus/Plus Query 7 AAAGATCTGGCCACCACAACACAACGATCGACGAATACAATAGGAAAATTTGAAATCTCG 66 |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 AAAGATCTGGCCACTTCAACACAACGATCGACGAATACAATCGGAAAATTTGAAATCTCG 60 Query 67 TCGATGAAGATGACTGCTAAGATGCGCCGTGAATTCCCGACGGCGTTCCTTCTCTTGTTT 126 |||| |||||||||||||||||| ||||||| ||||||||||||||||| | || || | Sbjct 61 TCGACGAAGATGACTGCTAAGATTCGCCGTGTATTCCCGACGGCGTTCC-T-TC-TG--T 115 Query 127 CTGGTTCCGGTGATGATTCCGGTCGGTGAGGCTGTATGGCTAGATGTGCCTCCCACCGGA 186 | ||| | || | |||||||||||||||| || |||||||||||||||||||||||| Sbjct 116 -T-GTTTC--TG--G-TTCCGGTCGGTGAGGCGGTGTGGCTAGATGTGCCTCCCACCGGA 168 Query 187 ACAAAGTGTGTATCTGAAGAAATCCAGAGCAATGTCGTCGTTTTGGCTGATTACCTCATC 246 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 169 ACAAAGTGTGTATCTGAAGAAATCCAGAGCAATGTCGTCGTTTTGGCCGATTACCTCATC 228 Query 247 ATCTCCGAGGATCACGAGGTCATGCCCACTATATCCGTCAAGGTGACATCCCCATATGGC 306 ||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||| Sbjct 229 ATCTCCGAGGATCACGACGTCATGCCCACTATTTCCGTCAAGGTGACGTCCCCGTATGGC 288 Query 307 AACAATCTGCACAATATGGAAAACGTAACGCATGGCCAATTTGCATTTACAACCCAAGAA 366 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 289 AACAATCTGCACAACATGGAAAATGTAACGCATGGCCAATTTGCATTTACAACCCAAGAA 348 Query 367 TCAGGGAACTACTTGGCGTGCTTTTGGGCAGATGAAAAGAGTCACGGAAACAAAAATGTT 426 || || ||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| Sbjct 349 TCCGGCAACTACTTGGCATGCTTTTGGGCTGATGCAAAGAGTCACGGAAACAAAAATGTT 408 Query 427 AGCATCAACATTGACTGGAGAACTGGAATCGCTGCTAAGGATTGGGCCTCTATTGCTAAG 486 ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 409 AGCATCAACATTGACTGGAAAACTGGAATCGCTGCTAAGGATTGGGCCTCTGTTGCTAAG 468 Query 487 AAAGAGAAGATCGAGGGTGTGGAGCTGGAGATCAGGAAACTCGAAGGCGCAGTCGAAGCC 546 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 469 AAAGAGAAGATCGAGGGTGTGGAGCTGGAGATCAGGAAACTAGAAGGCGCAGTGGAAGCC 528 Query 547 ATCCATGAAAATATACTCTACCTAAGAAACAGAGAAGCAGACATGAGGACAATGAGTGAG 606 |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 529 ATCCATGAAAATCTACTATACCTAAGAAACAGAGAAGCAGACATGAGGACAATGAGTGAG 588 Query 607 AAAACGAACTCGCGGGTGGCTTGGTACAGTATAATGTCACTAGGTGTTTGCATTGCTGTC 666 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 589 AAAACGAACTCGCGGGTGGCTTGGTATAGTATAATGTCGCTAGGTGTTTGCATTGCTGTC 648 Query 667 TCTGGTTTCCAGGTACTCTACTTGAAGCAGTACTTTGAGAAGAAGAAGCTTATATAGAGA 726 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 649 TCTGGTTTACAGGTACTCTACTTGAAGCAGTACTTTGAGAAGAAGAAGCTTATATAGAGA 708 Query 727 TTCCCTGATATTCAGGTCCTTTAATGAGAGTTTCTTCTTAAAGAATAATATTCAATTCAT 786 ||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 709 TTCACTGATATTCAGTTCCTTTAAAGAGAGTTTCCTCTTAAAGAATAATATTCAATTCAT 768 Query 787 CTCCTTTCTTTCCTCTTT----ACACGCCTCCTTTTTACTGACGCTGTAAAATTTT 838 |||||||| ||| | ||| ||||||||||| |||||||||||||||||||||| Sbjct 769 CTCCTTTCCTTCTTGTTTGTTTACACGCCTCCTATTTACTGACGCTGTAAAATTTT 824 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34158133632 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5