BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09580.1
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471056 jgi|Araly1|471056|fgenesh2_kg.1__1010__AT1G09580.1 1230 0.0
> Ahg471056 jgi|Araly1|471056|fgenesh2_kg.1__1010__AT1G09580.1
Length=870
Score = 1230 bits (666), Expect = 0.0
Identities = 782/836 (94%), Gaps = 16/836 (2%)
Strand=Plus/Plus
Query 7 AAAGATCTGGCCACCACAACACAACGATCGACGAATACAATAGGAAAATTTGAAATCTCG 66
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 AAAGATCTGGCCACTTCAACACAACGATCGACGAATACAATCGGAAAATTTGAAATCTCG 60
Query 67 TCGATGAAGATGACTGCTAAGATGCGCCGTGAATTCCCGACGGCGTTCCTTCTCTTGTTT 126
|||| |||||||||||||||||| ||||||| ||||||||||||||||| | || || |
Sbjct 61 TCGACGAAGATGACTGCTAAGATTCGCCGTGTATTCCCGACGGCGTTCC-T-TC-TG--T 115
Query 127 CTGGTTCCGGTGATGATTCCGGTCGGTGAGGCTGTATGGCTAGATGTGCCTCCCACCGGA 186
| ||| | || | |||||||||||||||| || ||||||||||||||||||||||||
Sbjct 116 -T-GTTTC--TG--G-TTCCGGTCGGTGAGGCGGTGTGGCTAGATGTGCCTCCCACCGGA 168
Query 187 ACAAAGTGTGTATCTGAAGAAATCCAGAGCAATGTCGTCGTTTTGGCTGATTACCTCATC 246
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 169 ACAAAGTGTGTATCTGAAGAAATCCAGAGCAATGTCGTCGTTTTGGCCGATTACCTCATC 228
Query 247 ATCTCCGAGGATCACGAGGTCATGCCCACTATATCCGTCAAGGTGACATCCCCATATGGC 306
||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 229 ATCTCCGAGGATCACGACGTCATGCCCACTATTTCCGTCAAGGTGACGTCCCCGTATGGC 288
Query 307 AACAATCTGCACAATATGGAAAACGTAACGCATGGCCAATTTGCATTTACAACCCAAGAA 366
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 289 AACAATCTGCACAACATGGAAAATGTAACGCATGGCCAATTTGCATTTACAACCCAAGAA 348
Query 367 TCAGGGAACTACTTGGCGTGCTTTTGGGCAGATGAAAAGAGTCACGGAAACAAAAATGTT 426
|| || ||||||||||| ||||||||||| |||| |||||||||||||||||||||||||
Sbjct 349 TCCGGCAACTACTTGGCATGCTTTTGGGCTGATGCAAAGAGTCACGGAAACAAAAATGTT 408
Query 427 AGCATCAACATTGACTGGAGAACTGGAATCGCTGCTAAGGATTGGGCCTCTATTGCTAAG 486
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 409 AGCATCAACATTGACTGGAAAACTGGAATCGCTGCTAAGGATTGGGCCTCTGTTGCTAAG 468
Query 487 AAAGAGAAGATCGAGGGTGTGGAGCTGGAGATCAGGAAACTCGAAGGCGCAGTCGAAGCC 546
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 469 AAAGAGAAGATCGAGGGTGTGGAGCTGGAGATCAGGAAACTAGAAGGCGCAGTGGAAGCC 528
Query 547 ATCCATGAAAATATACTCTACCTAAGAAACAGAGAAGCAGACATGAGGACAATGAGTGAG 606
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 ATCCATGAAAATCTACTATACCTAAGAAACAGAGAAGCAGACATGAGGACAATGAGTGAG 588
Query 607 AAAACGAACTCGCGGGTGGCTTGGTACAGTATAATGTCACTAGGTGTTTGCATTGCTGTC 666
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 589 AAAACGAACTCGCGGGTGGCTTGGTATAGTATAATGTCGCTAGGTGTTTGCATTGCTGTC 648
Query 667 TCTGGTTTCCAGGTACTCTACTTGAAGCAGTACTTTGAGAAGAAGAAGCTTATATAGAGA 726
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TCTGGTTTACAGGTACTCTACTTGAAGCAGTACTTTGAGAAGAAGAAGCTTATATAGAGA 708
Query 727 TTCCCTGATATTCAGGTCCTTTAATGAGAGTTTCTTCTTAAAGAATAATATTCAATTCAT 786
||| ||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 709 TTCACTGATATTCAGTTCCTTTAAAGAGAGTTTCCTCTTAAAGAATAATATTCAATTCAT 768
Query 787 CTCCTTTCTTTCCTCTTT----ACACGCCTCCTTTTTACTGACGCTGTAAAATTTT 838
|||||||| ||| | ||| ||||||||||| ||||||||||||||||||||||
Sbjct 769 CTCCTTTCCTTCTTGTTTGTTTACACGCCTCCTATTTACTGACGCTGTAAAATTTT 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34158133632
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5