BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09610.1
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919718 jgi|Araly1|919718|scaffold_100999.1 1445 0.0
> Ahg919718 jgi|Araly1|919718|scaffold_100999.1
Length=896
Score = 1445 bits (782), Expect = 0.0
Identities = 860/898 (96%), Gaps = 3/898 (0%)
Strand=Plus/Plus
Query 74 TTCTTAAATTTCGAAGCAGACAATGAGGCCTAAAGCAAATCAAAACCACAAGCTGAAGGT 133
||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1 TTCTTTAATTTCGAATCAGACAATGAGGCCTAAAGCAAATCAAAGCCACAAGCTGAAGCT 60
Query 134 TCTCCTTGTTTTTCTTCTTGCCACCTTAATTCTCATCTTCATCGTGAGATCAACTCTGAC 193
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 61 TCTCCTTGTTTTTCTTCTTGCCACCTTAATTCTCATCTTCATCTTGAGAGCAACTCTGAC 120
Query 194 ATCTTCACAGGAACACCAGACTCCACAAGAGACAAGATCAACGCGTTGCTCTGGTGCCTG 253
||||||||| ||||| ||||||||| ||||||||||| || |||||||||||||||| ||
Sbjct 121 ATCTTCACATGAACAGCAGACTCCAGAAGAGACAAGAACAGCGCGTTGCTCTGGTGCTTG 180
Query 254 CAATAAGCTACCACGTTCCCTCGCACAAGCCCTGATCCATTACTCGACCTCAGTTATCAC 313
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 181 CAATAAGCTACCACGTTCCCTCGCACAAGCCCTGATCCATTACTCGACTTCGGTTATCAC 240
Query 314 ACCACAACAAACGCTCAAAGAGATAGCGGTAAGCAGTAGAGTACTCGGCAAGAAGTCACC 373
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 241 ACCACAACAAACGCTCAAAGAGATAGCGGTTAGCAGTAGAGTACTCGGCAAAAAGTCACC 300
Query 374 CTGCAATTTCTTGGTGTTTGGTCTAGGCCATGACAGCCTCATGTGGAGCTCTCTCAACTA 433
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 CTGCAATTTCTTGGTGTTTGGTCTAGGCCACGACAGCCTCATGTGGAGCTCTCTCAACTA 360
Query 434 TGGAGGCCGGACTGTGTTTCTTGAAGAAGATGAAGCATGGATAAAACAGATCAAGAGACG 493
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 TGGAGGCCGGACTGTATTTCTTGAAGAAGATGAAGCATGGATTAAACAGATCAAGAGACG 420
Query 494 GTTTCCGATGCTGGAATCGTACCATGTAACATATGACAGTAAAGTCAATCAAGCCGATAA 553
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 421 GTTTCCGATGCTGGAATCGTATCATGTAACATATGACAGTAAAGTCAATCAAGCGGATAA 480
Query 554 TCTCATAGAAGTCGGAAAAGGACCTGAATGCACAGCCATTGGAGATCCAAGGTACTCAAT 613
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTCATAGAAGTTGGGAAAGGACCTGAATGCACAGCCATTGGAGATCCAAGGTACTCAAT 540
Query 614 GTGTCAACTAGCACTCAAGGGTTTGCCTGCAGAAATTTATGAGACCGGTTGGGATCTAAT 673
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 541 GTGTCAACTAGCACTCAAGGGTTTGCCTGCAGAAATCTATGAGACTAGTTGGGATCTAAT 600
Query 674 CATGGTTGATGCACCGACTGGCTACTACGATGAGGCTCCTGGGAGAATGACAGCAATTTA 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATGGTTGATGCACCGACTGGCTACTACGATGAGGCTCCTGGGAGAATGACAGCAATTTA 660
Query 734 CACTGCGGGAATGATGGCAAGGAACAGGAAACAGGGAGGAGAGACTGATGTGTTTGTGCA 793
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CACAGCGGGAATGATGGCGAGGAACAGGAAACAGGGAGGAGAGACTGATGTGTTTGTGCA 720
Query 794 TGATGTTAACAGGGAAATAGAAGACAAGTTTTCTAAGGCTTTCTTGTGTGAAGGGTACAT 853
|||||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 721 TGATGTGAACAGGGAAATAGAAAACAAGTTCTCTAAGACTTTCTTGTGTGAAGGGTACAT 780
Query 854 GAAGAAACAGGAAGGGAGACTAAGGCATTTTATTATCCCTAGCTATAGAGATGGATCAGA 913
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 781 GAAGAAACAGGAAGGGAGACTAAGGCATTTTGTTATCCCTAGCTATAGAGATGGATCAGA 840
Query 914 ATCAGAATCAAATAGACCCTTTTGTCCATAGTGA-CACATGTTACCTAGAGATCTCCT 970
|||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||||
Sbjct 841 ATCAGAATCAAATAGACCCTTTTGTCCATAGTAAACACATGTAACCTAGA--TCTCCT 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44031969135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5