BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G09625.1

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919720 jgi|Araly1|919720|scaffold_101001.1                        243    1e-63


> Ahg919720 jgi|Araly1|919720|scaffold_101001.1
Length=262

 Score =  243 bits (131),  Expect = 1e-63
 Identities = 215/252 (85%), Gaps = 19/252 (8%)
 Strand=Plus/Plus

Query  1    ATGGAGATCCCAATCTGGGGATGGTGTATTATCGTCGCAGGAATAATAATGGTGACGGTT  60
            ||||||||||||||||||||||||||||||||||||||||  ||||||||  || |||||
Sbjct  21   ATGGAGATCCCAATCTGGGGATGGTGTATTATCGTCGCAGCTATAATAATCTTGGCGGTT  80

Query  61   TTATGC-AATTTGCTCG-ATAGGTGGTGCTCGAAACCTCTTGAGATAGAAGAAGATGGTA  118
            || | | ||||| |||| | ||| ||| || |||||||| ||||||||||||||||||||
Sbjct  81   TTGT-CTAATTTTCTCGGA-AGGCGGTACTTGAAACCTCGTGAGATAGAAGAAGATGGTA  138

Query  119  AAGCGTCGTCTTCTGTAACTTTGGAGAAGAAGGA---T---CCAGTGAAAGAAGATGGTA  172
            |||||||||||||||| |||||||||||||||||   |   || ||||||||||| ||||
Sbjct  139  AAGCGTCGTCTTCTGTGACTTTGGAGAAGAAGGAACCTGTTCCTGTGAAAGAAGACGGTA  198

Query  173  AGAGCAAGACGAACGAGAAGGCACAAGCTAAGCCAAATAATAATCTCGTTTGAAGAAAAt  232
            ||||||||||||||||||||||||  ||   |     | |||| ||||| ||||||||||
Sbjct  199  AGAGCAAGACGAACGAGAAGGCAC--GCG--G-----TGATAACCTCGTCTGAAGAAAAT  249

Query  233  tttcaatatatt  244
            ||||||||||||
Sbjct  250  TTTCAATATATT  261



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15529324723


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5