BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09630.1
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919721 jgi|Araly1|919721|scaffold_101002.1 1173 0.0
> Ahg919721 jgi|Araly1|919721|scaffold_101002.1
Length=695
Score = 1173 bits (635), Expect = 0.0
Identities = 676/696 (97%), Gaps = 2/696 (0%)
Strand=Plus/Plus
Query 118 TCCTCG-AGAAAAGTGTAACAATGGCGAGAAGACCGGACGAAGAATACGACTACTTGTTT 176
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCCTCGAAG-AAAGTGTAACAATGGCGAGAAGACCGGACGAAGAATACGACTACTTGTTT 59
Query 177 AAAGTGGTTTTGATCGGAGACTCCGGTGTCGGCAAGTCTAATCTCCTCTCTAGATTCACT 236
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 60 AAAGTGGTTTTGATCGGAGACTCCGGTGTCGGCAAGTCAAATCTCCTCTCTAGATTCACT 119
Query 237 CGCAACGAGTTCTGCTTAGAATCCAAATCCACCATTGGTGTCGAATTCGCTACTCGTACT 296
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 120 CGCAACGAGTTCTGCTTAGAATCCAAATCCACCATCGGTGTCGAATTCGCTACTCGTACT 179
Query 297 CTCCAAGTGGAAGGAAGGACTGTGAAAGCTCAGATATGGGACACGGCTGGGCAAGAACGA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTCCAAGTGGAAGGAAGGACTGTGAAAGCTCAGATATGGGACACGGCTGGGCAAGAACGA 239
Query 357 TACAGAGCCATAACTAGCGCCTATTACAGAGGTGCACTTGGAGCTCTTTTGGTCTATGAT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TACAGAGCCATAACTAGCGCCTATTACAGAGGTGCACTTGGAGCTCTTTTGGTCTATGAT 299
Query 417 GTCACCAAGCCAACAACGTTTGAGAATGTAAGCAGGTGGTTAAAAGAACTAAGAGACCAT 476
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 GTCACTAAGCCAACAACGTTTGAGAATGTAAGCAGGTGGTTAAAAGAACTCAGAGACCAT 359
Query 477 GCAGATTCCAATATAGTGATCATGTTGATTGGGAACAAGACAGATCTGAAGCATCTCAGA 536
||||||||||| || || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 GCAGATTCCAACATCGTCATCATGTTGATTGGAAACAAGACAGATCTGAAGCATCTCAGA 419
Query 537 GCAGTTGCCACAGAGGATGCTCAGAGCTATGCAGAGAAAGAAGGCTTATCTTTCATCGAG 596
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 420 GCAGTTGCCACAGAGGATGCTCAGAGCTATGCAGAGAAAGAAGGCTTGTCTTTCATTGAG 479
Query 597 ACATCGGCTCTCGAGGCATTAAACGTAGAAAAGGCTTTTCAGACGATTCTCTCGGAGGTT 656
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 480 ACATCGGCTCTCGAGGCATTAAACGTAGAGAAGGCTTTTCAGACGATTCTCTCGGAGATT 539
Query 657 TATAGGATCATCAGCAAGAAGTCGATATCTTCAGACCAGACAACTGCAAATGCCAACATC 716
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 540 TATAGGATTATCAGCAAGAAGTCGATATCTTCAGACCAGACAACTGCAAATGCCAGCATC 599
Query 717 AAGGAAGGCCAAACAATTGATGTGGCTGCTACTTCTGAATCAAACGCTAAGAAGCCTTGT 776
|| |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||
Sbjct 600 AAAGAAGGCCAAACAATTGATGTTGCTGCTACTTCTGAATCAACCGCTAAGAAACCTTGT 659
Query 777 TGCTCATCGTCTTGAAAGGCTTTGTTTGTGTTGCAC 812
||||||||||||||||||||||||||||||||||||
Sbjct 660 TGCTCATCGTCTTGAAAGGCTTTGTTTGTGTTGCAC 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34806223221
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5