BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09640.1
Length=1795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471063 jgi|Araly1|471063|fgenesh2_kg.1__1017__AT1G09640.1 2732 0.0
Ahg474857 jgi|Araly1|474857|fgenesh2_kg.1__4811__AT1G57720.1 1478 0.0
> Ahg471063 jgi|Araly1|471063|fgenesh2_kg.1__1017__AT1G09640.1
Length=1766
Score = 2732 bits (1479), Expect = 0.0
Identities = 1683/1779 (95%), Gaps = 24/1779 (1%)
Strand=Plus/Plus
Query 4 ATACAGATTTTAAAAACCCTACTTCTTCATCATCATCCCTTCAACACTCCTTTATAGCTT 63
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1 ATACAGATTTTAAAAACCCTA---CTTCATCAGCATCCCTTCAACACTCCTTTATAGCTT 57
Query 64 TTCTCCGCCTCAACTTTTTGCTTCTTCTCTCTCGATTTGCTCTCACGGAAGATTCTT-CA 122
||||||||||| | |||||| ||| | ||||||||||||||||||||||||||| || ||
Sbjct 58 TTCTCCGCCTC-ATTTTTTGTTTC-T-TCTCTCGATTTGCTCTCACGGAAGATT-TTGCA 113
Query 123 GAATATCTGATCCGATATCAGAAGCCCCAAGTTCGCTTGAATTCCGTCTGAGCAATGGCT 182
||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 114 GAACATCTGATCCGATATCAGAAG-CCCAAGTTTACTTGAATTCCGTCTGAGCAATGGCT 172
Query 183 TTGGTCTTGCACACGTACAAGGGAAACAAAAGTGCTGAGAAGGCACTCATTGCAGCAGAG 242
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 173 TTGGTCTTGCACACGTACAAGGGAAACAAAAGTGCTGATAAGGCACTCATTGTAGCAGAG 232
Query 243 TACGTTGGTGTGCAGATCGATGTGCCCTCTGACTTTCAGATGGGTGTCACTAACAAAACC 302
||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 233 TACGTTGGTCTGCAGATCGATGTCCCCTCTGACTTTGAGATGGGTGTCACTAACAAAACC 292
Query 303 CCTGCGTTCCTCAAGATGAACCCTATTGGAAAGGTTCCTGTACTTGAGACTCCCGAGGGT 362
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 CCTGAGTTCCTCAAGATGAACCCTATTGGAAAGGTTCCTGTACTTGAGACTCCCGAGGGA 352
Query 363 TCAGTATTTGAAAGCAACGCAATTGCCCGTTATGTAAGCCGATTGAATGGTGACAACTCT 422
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 353 TCAGTATTTGAGAGCAACGCCATTGCCCGTTATGTAAGCCGATTGAACGGTGACAACTCT 412
Query 423 TTGAACGGATCCTCCCTGATCGAATATGCACAAATTGAGCAATGGATTGA-TTTCTCTTC 481
|||||||||||||||||||| |||||||||||| |||||||||||| || ||| ||||
Sbjct 413 TTGAACGGATCCTCCCTGATTGAATATGCACAAGTTGAGCAATGGAGCGACTTT-GCTTC 471
Query 482 ATTGGAGATCTATGCAAGTATCTTGAGGTGGTTCGGCCCAAGAATGGGCTTTATGCCATA 541
|||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 472 ATTGGAGATCTATGGAAACATCTTAAGGTGGTTTGGCCCAAGAATGGGCTTTATGCCATA 531
Query 542 CAGTGCTCCGGCTGAAGAAGGTGCGATCTCTACGTTGAAGAGAGCACTTGATGCTCTGAA 601
||||||||||||||| |||||| | |||||| | ||||||||||||||||||||||||||
Sbjct 532 CAGTGCTCCGGCTGAGGAAGGTACCATCTCTGCATTGAAGAGAGCACTTGATGCTCTGAA 591
Query 602 CACACATCTCACGTCTAACACTTACCTTGTCGGACACTCTATTACCCTTGCTGATATCAT 661
|||||||||| | || |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 592 CACACATCTCGCTTCCAACACTTACCTTGTTGGACACTCTATTACCCTTGCTGATATTAT 651
Query 662 CACTGTCTGCAACTTGAACTTGGGATTTGCTACTGTCATGACCAAGAAATTTACCTCTGA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CACTGTCTGCAACTTGAACTTGGGATTTGCTACTGTCATGACCAAGAAATTTACCTCTGA 711
Query 722 ATTTCCTCATGTTGAGAGGTACTTCTGGACTGTGGTTAACCAACCAAACTTCACTAAAGT 781
||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 712 ATTCCCTCATGTTGAGCGGTACTTCTGGACTGTGGTTAACCAACCAAACTTCAAGAAAGT 771
Query 782 GTTGGGTGATGTCAAACAGACTGAAGCTGTCCCTCCTATTGCTTCCAAGAAAGCTGCCCA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GTTGGGTGATGTCAAACAGACTGAAGCTGTCCCTCCTATTGCTTCCAAGAAAGCTGCCCA 831
Query 842 GCCTGCAAAGCCCAAAGAAGAGCCTAAGAAAAAGGAAGCCCCAGTAGCAGAGGCACCTAA 901
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GCCTGCGAAGCCCAAAGAAGAGCCTAAGAAAAAGGAAGCCCCAGTAGCAGAGGCACCTAA 891
Query 902 GCTTGCTGAAGAGGAAGAGGCACCAAAGCCCAAAGCCAAGAACCCTCTTGACTTGCTACC 961
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GCTTGCCGAAGAGGAAGAGGCACCAAAGCCCAAAGCCAAGAACCCTCTTGACTTGCTACC 951
Query 962 ACCAAGCCCTATGGTTCTAGATGATTGGAAGAGGCTTTACTCAAACACCAAATCTAACTT 1021
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 ACCAAGCCCTATGGTACTAGATGATTGGAAGAGGCTTTACTCAAACACCAAATCTAACTT 1011
Query 1022 CCGCGAGGTTGCTATTAAAGGATTCTGGGACATGTATGACCCAGAGGGATACTCACTATG 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1012 CCGCGAGGTTGCTATTAAAGGATTCTGGGACATGTATGACCCAGAGGGATACTCACTTTG 1071
Query 1082 GTTCTGTGACTACAAGTACAACGATGAGAACATGGTGTCATTTGTCACGCTCAACAAGGT 1141
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1072 GTTCTGTGACTACAAGTACAACGATGAGAACATGGTATCATTTGTCACACTCAACAAGGT 1131
Query 1142 TGGTGGGTTCCTTCAGCGTATGGACTTGGCACGTAAATACTCCTTTGGAAAGATGCTGAT 1201
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GGGTGGGTTCCTTCAGCGTATGGACTTGGCACGTAAATACTCCTTTGGAAAGATGCTGAT 1191
Query 1202 TTGTGGGTCAGAGGGTCCGTTCAAGGTGAAGGGTTTATGGCTGTTCCGTGGACCAGAGAT 1261
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TTGCGGGTCAGAGGGTCCGTTTAAGGTGAAGGGTTTATGGCTGTTCCGTGGACCAGAGAT 1251
Query 1262 CCCAAAGTTCATAATGGACGAGGTGTACGACATGGAGCTGTATGAGTGGACTAAGGTTGA 1321
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1252 CCCAAAGTTCATAATGGACGAGGTGTATGACATGGAGCTGTACGAGTGGACTAAGGTTGA 1311
Query 1322 TATCTCAGATGAAGCCCAGAAGGAGCGTGTTAGCCAGATGATTGAAGACGCAGAGCCATT 1381
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1312 TATCTCAGATGAAGCCCAGAAGGAGCGTGTTAGCCAGATGATCGAAGATGCAGAGCCATT 1371
Query 1382 TGAAGGTGAGGCTCTCTTGGACGCCAAGTGCTTCAAGTGAGAAGAGAGAATGGTTTGGTA 1441
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1372 TGAAGGTGAGGCTCTCTTGGATGCCAAGTGCTTCAAGTGAAAAGAGAGAATGGTTTGGTA 1431
Query 1442 CTTCCATTTACAGGTTTTGCAGCTG--GGG-CTTTACATATCTTTCTATCTGTCTGTCTC 1498
||||||||||| ||||||||||||| ||| |||||||||||||||||||| | | ||||
Sbjct 1432 CTTCCATTTACCGGTTTTGCAGCTGCTGGGGCTTTACATATCTTTCTATCTCTGTCTCTC 1491
Query 1499 ACATAGGGGTTTTGCTCTGTGAC--GTGTCGCATAGACTGtttttttCTTTTCTAATCGA 1556
||||||||||||| |||||||| |||||||||||||||||||| |||| ||||| ||
Sbjct 1492 CCATAGGGGTTTTGGTCTGTGACTTGTGTCGCATAGACTGTTTTT--CTTT-CTAATTGA 1548
Query 1557 GTGTCAAGGACAAGTCTTTTTAGTTCTTTGTTAATGTTTCGCCTCCGT-CCAGAATTGTT 1615
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1549 GTGTCAAGGACAAGTCTTTTTAGTTCTTTGTTAATGTTTCGCCTCTGTGCCAGAATTGTT 1608
Query 1616 TACTATACCAGTTTTCGAAATCCTGACCGGCCAGTCTACCCTGGCAATAGGCAATACATG 1675
||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1609 TAC-ATACCAGTTTTCGAAGTTCTGACCGGCCAGTCTACCCTGGCAATAGGCAATACATG 1667
Query 1676 GTCTGGTTTATTTGTTTTACGGTAATTTTGCCTTGA-TTGATTTTCTTTGACGCGTTTCG 1734
|||||||||||||||||||| |||||||| ||||| || |||| ||| |||||||||||
Sbjct 1668 GTCTGGTTTATTTGTTTTACAGTAATTTTACCTTGGGTTTATTTGCTTCGACGCGTTTCG 1727
Query 1735 GTCAACTTATATA--CATTGGTCTTTGAGTTGAACATTT 1771
||||| ||||||| ||||||||||||||||||||||||
Sbjct 1728 GTCAAATTATATATACATTGGTCTTTGAGTTGAACATTT 1766
> Ahg474857 jgi|Araly1|474857|fgenesh2_kg.1__4811__AT1G57720.1
Length=1502
Score = 1478 bits (800), Expect = 0.0
Identities = 1182/1363 (87%), Gaps = 39/1363 (3%)
Strand=Plus/Plus
Query 85 TTCT-TCTCTCTCGATTTGCTCTCACGGAAGATTCTT-CAG-AA--TATCTGATCCGATA 139
|||| |||| |||| ||||||||| ||||| ||| || ||| || | ||| ||| || |
Sbjct 30 TTCTCTCTCGCTCGCTTTGCTCTCTCGGAAAATT-TTGCAGAAAGCTCTCTCATCTGA-A 87
Query 140 -TCAG--AAGCCCCAAGTTCGCT-TGA--AT-TCCGTCTGAGCAATGGCTTTGGTCTTGC 192
|||| || | || |||||| | | | | ||||| ||||||||||| ||||| ||||
Sbjct 88 CTCAGAAAATCTCCGAGTTCG-TAT-ATCTTCTCCGTTTGAGCAATGGCGTTGGTGTTGC 145
Query 193 ACACGTACAAGGGAAACAAAAGTGCTGAGAAGGCACTCATTGCAGCAGAGTACGTTGGTG 252
|||||||||||||||||||| |||| | |||||||| ||||| || ||||| | ||||
Sbjct 146 ACACGTACAAGGGAAACAAAGGTGCCAATAAGGCACTTATTGCTGCGGAGTATGCGGGTG 205
Query 253 TGCAGATCGATGTGCCCTCTGACTTTCAGATGGGTGTCACTAACAAAACCCCTGCGTTCC 312
|| ||||||| | | |||| |||||||||||||| ||||||||||| | || | |||||
Sbjct 206 TGAAGATCGAGGAGGCCTCAGACTTTCAGATGGGCGTCACTAACAAGTCACCAGAGTTCC 265
Query 313 TCAAGATGAACCCTATTGGAAAGGTTCCTGTACTTGAGACTCCCGAGGGTTC-AGTATTT 371
| |||||||||||||||||||||||||| || ||||||||||| || ||| | | | |||
Sbjct 266 TTAAGATGAACCCTATTGGAAAGGTTCCCGTGCTTGAGACTCCTGAAGGTCCTA-TCTTT 324
Query 372 GAAAGCAACGCAATTGCCCGTTATGTAAGCCGAT-TGAATGGTGACAACTCTTTGAACGG 430
|| ||||| || |||||||| || || ||||| | ||||||||||||||||||||| ||
Sbjct 325 GAGAGCAATGCCATTGCCCGATACGTGAGCCG-TAAGAATGGTGACAACTCTTTGAATGG 383
Query 431 ATCCTCCCTGATCGAATATGCACAAATTGAGCAATGGATTGATTTCT-CTTCATTGGAGA 489
||||||||| || ||||| || || |||||||||||||| ||||| | | || |||||||
Sbjct 384 ATCCTCCCTCATTGAATACGCTCACATTGAGCAATGGATCGATTT-TGCCTCGTTGGAGA 442
Query 490 TCT-ATGC-AAGTATCTTGAGGTGGTTCGGC-CCAAGAATGGGCTTT-ATGCCATACAGT 545
| | |||| | || |||| ||||||| || |||||| |||||||| | || | | |
Sbjct 443 T-TGATGCTCA-CATGTTGAAGTGGTTC-GCTCCAAGATTGGGCTTTGCT-CCCTTCTCT 498
Query 546 GCTCCGGCTGAAGAAG-GTGCGATCTCTACGTTGAAGAGAGCACTTGATGCTCTGAACAC 604
||||| ||||| |||| | || || ||| | |||||||||| |||||| |||||||||||
Sbjct 499 GCTCCAGCTGAGGAAGCG-GCAATTTCTGCATTGAAGAGAGGACTTGAGGCTCTGAACAC 557
Query 605 ACATCTCACGTCTAACACTTACCTTGTCGGACACTCTATTACCCTTGCTGATATCATCAC 664
||||||| | || |||||||||||||| ||||||||| |||||||||||||||| ||||
Sbjct 558 ACATCTCGCCTCCAACACTTACCTTGTTGGACACTCTGTTACCCTTGCTGATATTGTCAC 617
Query 665 TGTCTGCAACTTGAACTTGGGATTTGCTACTGTCATGACCAAGAAATTTACCTCTGAATT 724
|||||||||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 618 CATCTGCAACTTGAACTTGGGATTTGCTACAGTGATGACCAAGAAATTTACCTCTGCATT 677
Query 725 TCCTCATGTTGAGAGGTACTTCTGGACTGTGGTTAACCAACCAAACTTCACTAAAGTGTT 784
|||||||||||||| ||||||||||| |||||||||| |||||||||| || |||||
Sbjct 678 CCCTCATGTTGAGAGATACTTCTGGACAATGGTTAACCAGCCAAACTTCAAGAAGGTGTT 737
Query 785 GGGTGATGTCAAACAGACTGAAGCTGTCCCTCCTA-TTGCTTCCAAGAAAGCTGCC-CAG 842
|||||||| |||||| ||||||||||||||||| | || | || ||||||||| || |||
Sbjct 738 GGGTGATGCCAAACAAACTGAAGCTGTCCCTCC-AGTTCCATCTAAGAAAGCT-CCACAG 795
Query 843 CCTGCAAAGCCCAAAGAAGAGCCTAAGAAAAAGGAAGCCCCAGTAGCAGAGGCACCTAAG 902
|||||||||||||| || ||||||||| |||| ||||| || ||||||||||| |||
Sbjct 796 CCTGCAAAGCCCAAGGAGGAGCCTAAG---AAGGCGGCCCCTGTTGCAGAGGCACCAAAG 852
Query 903 CTTGCTGAAGAGGAAGAGGCACCAAAGCCCAAAGCCAAGAACCCTCTTGACTTGCTACCA 962
| |||||| |||||||| ||||||||||| ||||||||||| ||||| || |||||||||
Sbjct 853 CCTGCTGAGGAGGAAGAAGCACCAAAGCCTAAAGCCAAGAATCCTCTCGATTTGCTACCA 912
Query 963 CCAAGCCCTATGGTTCTAGATGATTGGAAGAGGCTTTACTCAAACACCAAATCTAACTTC 1022
|||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 913 CCAAGCCCAATGGTTCTTGATGACTGGAAGAGGCTTTACTCGAACACCAAATCCAACTTC 972
Query 1023 CGCGAGGTTGCTATTAAAGGATTCTGGGACATGTATGACCCAGAGGGATACTCACTATGG 1082
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 973 CGTGAGGTTGCTATTAAAGGATTCTGGGACATGTATGACCCAGAGGGGTACTCACTATGG 1032
Query 1083 TTCTGTGACTACAAGTACAACGATGAGAACATGGTGTCATTTGTCACGCTCAACAAGGTT 1142
||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||
Sbjct 1033 TTCTGTGACTACAAGTACAACGATGAGAACATGGTCTCCTTTGTTACACTCAACAAGGTA 1092
Query 1143 GGTGGGTTCCTTCAGCGTATGGACTTGGCACGTAAATACTCCTTTGGAAAGATGCTGATT 1202
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1093 GGAGGGTTCCTTCAGCGTATGGACTTGGCACGTAAATACTCCTTCGGAAAGATGCTGATT 1152
Query 1203 TGTGGGTCAGAGGGTCCGTTCAAGGTGAAGGGTTTATGGCTGTTCCGTGGACCAGAGATC 1262
|| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1153 TGCGGGTCAGAGGGTCCTTTCAAGGTGAAGGGTTTATGGCTCTTCCGTGGACCAGAGATC 1212
Query 1263 CCAAAGTTCATAATGGACGAGGTGTACGACATGGAGCTGTATGAGTGGACTAAGGTTGAT 1322
|| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1213 CCTAAGTTCATAATGGATGAGGTGTACGACATGGAGCTGTACGAGTGGACTAAGGTTGAT 1272
Query 1323 ATCTCAGATGAAGCCCAGAAGGAGCGTGTTAGCCAGATGATTGAAGACGCAGAGCCATTT 1382
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1273 ATCTCAGATGAAGCACAGAAGGAGCGTGTTAGCCAGATGATTGAAGACGCCGAGCCATTT 1332
Query 1383 GAAGGTGAGGCTCTCTTGGACGCCAAGTGCTTCAAGTGAGAAG 1425
||||| |||||||| ||||||||||| ||||| |||||| |||
Sbjct 1333 GAAGGCGAGGCTCTTTTGGACGCCAAATGCTTTAAGTGAAAAG 1375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67381643405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5