BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G09645.1

Length=751
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919723 jgi|Araly1|919723|scaffold_101004.1                        523    6e-148


> Ahg919723 jgi|Araly1|919723|scaffold_101004.1
Length=358

 Score =  523 bits (283),  Expect = 6e-148
 Identities = 327/348 (94%), Gaps = 4/348 (1%)
 Strand=Plus/Plus

Query  193  GAGAGAGATGAGACAGAACTCAGCAACTGGTGGTCTTTCATGGCGGCGTTTACTGTTCTT  252
            ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct  14   GAGAGAGATGAGACAGAACTCAGCAA---GTGGTCTTTCATGGCGGCGTTTACTGTTCTT  70

Query  253  CGCTTCGATTGGTTTGCAGTTCTTCTTAGGTCTATCGGGTGATTCCAAGAACACGAATGC  312
            |||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct  71   CGCTTCGATTGGTTTGCAGTTCTTCTTAGGTCTATCCGGTGATTCCAAGAATACAAATGC  130

Query  313  AGGAGTTAAGACAGAATCTCATACTTCTTCCAGCAAAACAGGCACAAAAGTTATCCTTGT  372
            |||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||  |
Sbjct  131  AGGAGTCAAGGCAGAATCTCATACTTCTTCCAGCAAAACAGGCACAAAAGTAATCCTCAT  190

Query  373  TCTAGTTGGATTTGTGGCTGTGGCCATGTTCTCGTTCTTCCTATACAAGCTATGGCAAAA  432
             || ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||
Sbjct  191  ACTGGTTGGATTTGTGGCTGTGGCGGTGTTCTCGTTCTTTCTATACAAGCTATGGCAAAA  250

Query  433  GAAGAAAAGAGACGAGCAGTATGCTCGACTGTTGAAGCTGTTTGAGGAAGATGATGAACT  492
            ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct  251  GAAGAAAAGAGACGAGCAGTATGCTAGACTCTTGAAGCTGTTTGAGGAAGATGATGAACT  310

Query  493  CGAGGTTGAATTAGGTCTTCGAGATTAAAAA-CGCAAATTTGTCAACA  539
             |||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct  311  GGAGGTTGAATTAGGCCTTCGAGATTAAAAAACGCAAATTTGTCAACA  358



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27677237742


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5