BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09650.1
Length=1478
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471065 jgi|Araly1|471065|fgenesh2_kg.1__1019__AT1G09650.1 1696 0.0
Ahg897462 jgi|Araly1|897462|Al_scaffold_0005_1428 741 0.0
Ahg911014 jgi|Araly1|911014|Al_scaffold_0001_1268 396 3e-109
Ahg914216 jgi|Araly1|914216|Al_scaffold_0001_4470 388 5e-107
Ahg910955 jgi|Araly1|910955|Al_scaffold_0001_1209 224 1e-57
Ahg893541 jgi|Araly1|893541|Al_scaffold_0006_1537 159 4e-38
> Ahg471065 jgi|Araly1|471065|fgenesh2_kg.1__1019__AT1G09650.1
Length=1275
Score = 1696 bits (918), Expect = 0.0
Identities = 1190/1313 (91%), Gaps = 51/1313 (4%)
Strand=Plus/Plus
Query 21 CCTTGATCTGATGAAAAGGAAGTGTTGAGTTTTGAGAAACGGAAAGTGTTGAGTTTTGTC 80
||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||||| |
Sbjct 1 CCTTGATCTGATGAAAAGGTAGTATTGAGTTTTAAGAAACGGCAAGTGTTGAGTTTT-AC 59
Query 81 TTTTCTATAGAAGATTTTTGTTTTCCTGTTTTATCTATAAATAAGCCTCTTAAATCTCTT 140
|||||| || |||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 60 TTTTCTGTACAAGATTTTTGTTTTCCTGTTTTATCTATAAATAAACCTCTTTAATCTCTT 119
Query 141 CATCAACAATGACTTGTCTGCAATTACAAGAATGTCGAAAAAGCAACGTTGCTTGATGAT 200
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 CATCAACAATGACTTGTCTGCAATCACAAGAATGTCGAAAAAGCAACGTTGCTTGATGAT 179
Query 201 GGAATCGCTGCCCCACGAGGTCGTAGAGTGCATCCTAGAGAGACTTGATGCGGATCCTCT 260
|||||| ||||||||||| ||||||||| |||||||||||||||| | || |||||||||
Sbjct 180 GGAATCCCTGCCCCACGATGTCGTAGAGCGCATCCTAGAGAGACTGGCTGTGGATCCTCT 239
Query 261 GCTGAGATTCAAGGCTGTATCGAAACAATGGAAATCAACTATTGAATCTCCATTCTTCCA 320
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 240 GCTGAGATTCAAGGCTGTATCAAAACAATGGAAATCAACTATCGAATCTCCATTCTTCCA 299
Query 321 GCGAAGACAGTT-CACACAGCGTCAGCAATCAGGTAATCCAGATGTTCTCATGGTCT-CC 378
|||||||||||| || |||||| ||||||||||||||||||||||||||| |||||| ||
Sbjct 300 GCGAAGACAGTTCCA-ACAGCGACAGCAATCAGGTAATCCAGATGTTCTCTTGGTCTCCC 358
Query 379 -----CGTTGTGCTGATATTAATTCGGAAATAGAAGCTCTTACTACATTGGTGTTGGGTT 433
|||| || || ||||||| | || |||||||||||| ||||||||||||||||||
Sbjct 359 TATGTCGTTATGATGTTATTAATCCCGATATAGAAGCTCTTGCTACATTGGTGTTGGGTT 418
Query 434 CATCATCATCTGTCAAGATCCCTACTCCTTGggaggaggaggaggaggaggaCAAAGAAT 493
||||||||||||||||||||||||||||||||||||| || |||||||| ||| | ||
Sbjct 419 CATCATCATCTGTCAAGATCCCTACTCCTTGGGAGGA-GA--AGGAGGAGAACACTGTAT 475
Query 494 ACTCT-GTTTCCCAG-GATAGCTGTGACGGTCTCGTTTGTCTCTTCGATA-AATTCAAAT 550
||| | ||||||| | |||||||||||||||||||||||||||||||||| | ||||
Sbjct 476 ACT-TAGTTTCCC-GTGATAGCTGTGACGGTCTCGTTTGTCTCTTCGATATCA-GGAAAT 532
Query 551 CCGGTTTTGTGTTCAATCCCGCCACTAGATGGTATCACCCTCTTCCT-CTCTGCCAATTA 609
||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 533 CCGGTTTTGTGGTCAATCCCACCACTAGATGGTATCACCCTCTTCCTCCT-TGCCAATTA 591
Query 610 CAACAACTCCTTATTGCCATAGGCGACGGTTTCTACGATCTTGGATACAGAGTCTCTAGG 669
||||||||| ||| || | |||| ||| ||||||||||||||||||||||| |||||| |
Sbjct 592 CAACAACTCATTACTGGCTTAGGGGACAGTTTCTACGATCTTGGATACAGACTCTCTAAG 651
Query 670 CTTGGATTCGGTAAAGACAAACTCACAGGCACATACAAGCCCGTTTGGTTATACAACTCT 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CTTGGATTCGGTAAAGACAAACTCACAGGCACATACAAGCCCGTTTGGTTATACAACTCT 711
Query 730 ATAGAAATTGGCCTAGAAAACGCTACTACATGCGAGGTTTTCGACTTTAGCACCAACGCT 789
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TTAGAAATTGGCCTAGAAAACGCTACTACATGCGAGGTTTTCGACTTTAGCACCAACGCT 771
Query 790 TGGAGGTATGTTTCACCAGCTGCTCCTTATAGGATTGTTGGTTGCCCCGCACCTGTCTGC 849
|||||||||||||| || |||||||| ||| ||||||||||||||||| |||||||||||
Sbjct 772 TGGAGGTATGTTTCTCCCGCTGCTCCGTATCGGATTGTTGGTTGCCCCTCACCTGTCTGC 831
Query 850 GTAGATGGGTCGCTTCATTGGTTCACCGAGTGCGAGGAAACCAAAATTCTTTCGTTCGAT 909
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 832 GTAGATGGGTCGCTTCATTGGTTCACCGAGTGCGAGGAGACCAAAATTCTATCGTTTGAT 891
Query 910 CTTCACACCGAAACCTTTCAAGTTGTCTCTAAAGCTCCCTTTGCCAATGTAGATGGATTC 969
|||||||||||||| |||||||| || ||||||||||| ||||||||||| |||||||||
Sbjct 892 CTTCACACCGAAACTTTTCAAGTCGTTTCTAAAGCTCCATTTGCCAATGTTGATGGATTC 951
Query 970 GATATAGTCATGTGCAACCTCGACAACCGCTTGTGCGTTTCCGAGATGAAGCTGCCCAAC 1029
|| | | ||||||||||||||||||||||||||||||||| |||||||
Sbjct 952 --------CA----C--C-TCGACAACCGCTTGTGCGTTTCCGAGATGAAGCGGCCCAAC 996
Query 1030 CAAGTGATATGGTCATTCAATTCAGGTAACAAGACATGGCACAAAATGTGTTCCATTAAT 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 997 CAAGTGATATGGTCATTCAATTCAGGTAACAAGACATGGCACAAAATGTGTTCCATTGAT 1056
Query 1090 CTGGATATAACTTCTCGTTGGTTTGGTCCT-ACTCAAGTATGCGCCGTCTTGCCACTAGC 1148
|||||||||||||||| ||||||||||| | || | ||||||| ||| ||||||||||
Sbjct 1057 CTGGATATAACTTCTCATTGGTTTGGTCGTCAC-C---TATGCGCGGTCATGCCACTAGC 1112
Query 1149 ACTTTTGGATGGgaagaagaagaagaagaaAAAGTTGTTGTTTTATTGTCGTGTA-CGAA 1207
||||||||||||||||||||||||| ||||||||||||||||||| | ||||
Sbjct 1113 ACTTTTGGATGGGAAGAAGAAGAAG---------TTGTTGTTTTATTGTCGTG-AGCGAA 1162
Query 1208 AACGAACAATGGTGGTACATGATGACGAAACCAAATCATATGATGTTGCTTTCGAGGCTG 1267
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1163 GTCGAACATTGATGGTACATGATCACGAAACCAAATCATATGATGTTGCTTTCGAGGCTG 1222
Query 1268 ACTCCATCGGTCATCCTGTCTGTTATTTCCCGAGTTTAATATCTATTTCATAA 1320
||||| ||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1223 ACTCCGTCGGTTATCCTGTTTGTTATTTCCCGAGTTTAATATCTATTTCATAA 1275
> Ahg897462 jgi|Araly1|897462|Al_scaffold_0005_1428
Length=1089
Score = 741 bits (401), Expect = 0.0
Identities = 830/1029 (81%), Gaps = 62/1029 (6%)
Strand=Plus/Plus
Query 195 GATGATGGAATCGCTGCCCCACGAGGTCGTAGAG-TGCATCCTAGAGAGACTTGATGCG- 252
|||||||||||||||||||||||| | ||||||| | ||||| ||||||||| |||
Sbjct 27 GATGATGGAATCGCTGCCCCACGATGCCGTAGAGCT-TATCCTGGAGAGACTTCCGGCGA 85
Query 253 GATCCTCTGCTGAGATTCAAGGCTGTATCGAAACAATGGAAATCAACTATTGAATCTCCA 312
|| |||||||||||||||||||||||||||| |||||||||||||| || ||| |||
Sbjct 86 AAT-CTCTGCTGAGATTCAAGGCTGTATCGAAGCAATGGAAATCAACGATCCAATG-CCA 143
Query 313 T-TCTTCCAGCGAA-GACAGTTCACACAGCGTCAGCAATCAGGTAATCCAGATGTTCTCA 370
||||||| ||| |||| || | ||||||||||||| ||| |||||||||| ||||
Sbjct 144 ACTCTTCCAA-GAAAGACACTTGAGGCAGCGTCAGCAATTAGGGGATCCAGATGTCCTCA 202
Query 371 TGGTCTCCC---GTTGTGCTGATATTA--ATTC-GGAAATAGAAGCTCTTACTACATTGG 424
|||| |||| || ||| ||| ||| | | ||| || ||| |||| || |||||||
Sbjct 203 TGGTGTCCCTACGTCGTGAGGATGTTATCAACCCGGACATCGAATCTCTAACAACATTGG 262
Query 425 TGTTGGGTTCATCATCATCT--G-TCAAGATCCCTACTCCTTGggaggaggaggaggagg 481
|||||||||||||||| || | ||||||||| ||||||||||||| | ||||| |
Sbjct 263 TGTTGGGTTCATCATCGTCACCGGTCAAGATCCATACTCCTTGGGAG-A--AGGAG-A-- 316
Query 482 aggaCAAAGAATACTCT-GTTTCCCAG-GATAGCTGTGACGGTCTCGTTTGTCTCTTCGA 539
| ||| || |||| | |||||||| | |||||||||||||||||||||||||| | |
Sbjct 317 AC-ACA--GATTACT-TAGTTTCCCATAG-TAGCTGTGACGGTCTCGTTTGTCTCTACAA 371
Query 540 TAAATTCAAATCCGGTTTTGTG-TTCAATCCCGCCACTAGATGGTATCACCCTCTTCCTC 598
| | | |||||||| ||| || |||||| ||||||||||| ||| |||||||||
Sbjct 372 TCCCCACCATTCCGGTTTCGTGGTT-AATCCCACCACTAGATGGCATCGGCCTCTTCCTG 430
Query 599 TCTGCCAATTACAACAACTCCTTATTGCCATAGGCGACGGTTTCTACGATCTT-GGATAC 657
||||| |||||||||||||| |||| | | || | ||| |||||||| || | ||||||
Sbjct 431 TCTGCGAATTACAACAACTCATTATCGACTTACGAGACAGTTTCTACC-TCCTCGGATAC 489
Query 658 AGAGTCT-CTAGGCTTGGATTCGGTAAAGACAAACTCACAGGCACATACAAGCCCGTTTG 716
|| | | | || ||||||||||||||||||||| |||| ||||| |||||||| |||||
Sbjct 490 GGACTATACAAG-CTTGGATTCGGTAAAGACAAATTCACCGGCACTTACAAGCCTGTTTG 548
Query 717 GTTATACAACTCTATAGAAATTGGCCTAGAAAACGCTACTACATGCGAGGTTTTCGACTT 776
||||||||||||| ||||||| ||| |||||||||| ||||||||||| |||||||||||
Sbjct 549 GTTATACAACTCTCTAGAAATAGGCTTAGAAAACGCCACTACATGCGAAGTTTTCGACTT 608
Query 777 TAGCACCAACGCTTGGAGGTATGTTTCACCAGCTGCTCCTTATAGGATTGTTGGTTGCCC 836
||||||||| |||||||||||||| | || |||||||||||| || ||||| || |||
Sbjct 609 TAGCACCAATGCTTGGAGGTATGTCACTCCCGCTGCTCCTTATCGGGTTGTTCATTTCCC 668
Query 837 CGCA-CCTGTCTGCGTAGATGGGTCGCTTCATTGGTTCACCGAGTGCGAGGAAACCAAAA 895
|| | ||||||| ||||||||||| ||||||||||||||||| ||| | |||||||||
Sbjct 669 CG-ATCCTGTCTATGTAGATGGGTCTCTTCATTGGTTCACCGACTGCCAAGAAACCAAAG 727
Query 896 TTCTTTCGTTCGATCTTCACACCGAAACCTTTCAAGTTGTCTCTAAAGCTCCCTTTGCCA 955
|| | || |||||||||||||| ||| | |||||||| |||||||||||||||||||||
Sbjct 728 TTGTATCCTTCGATCTTCACACTGAAGCGTTTCAAGTCATCTCTAAAGCTCCCTTTGCCA 787
Query 956 A---TGTAGATGGATTCGATATAGTCATGTGCAACCTCGACAACCGCTTGTGCGTTTCCG 1012
| || | || ||||| || ||||||||||||||||||||||| |||||||| |||
Sbjct 788 AGAATGAAAATCCTTTCGACATCGTCATGTGCAACCTCGACAACCGTTTGTGCGTATCCC 847
Query 1013 AG-ATGAAGCTG-CCCAACCAAGTGATATGGTCATTCAATTCAGGTAACAAGACATGGCA 1070
|| | |||| || ||||| ||||| |||||||| ||| ||||| |||||||| ||| |
Sbjct 848 AGCA-GAAG-TGGCCCAATCAAGTTATATGGTCCTTCCATTCAAACAACAAGACGTGGGA 905
Query 1071 CAAAATGTGTTCCATTAATCTGGATATAAC--TTCTCGTTGGTTTGGTC-CTACTCAAGT 1127
||||||| ||||| | | || |||| || || |||||| || | || | |
Sbjct 906 GAAAATGTACTCCAT-A----G-ATGTAACCGTT-TCTTTGGTTGGGAAGC-AC--A--T 953
Query 1128 ATGCGC-CGTCTTGCCACTAGCACTTTTGGATGGgaagaagaagaagaagaaAAAGTTGT 1186
|||||| | || ||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 954 ATGCGCAC-TCCCGCCACTAGCACTTTTGGATGGGAAGAAGAAGAAGAAGAAGAAGCTGC 1012
Query 1187 TGTTTTATT 1195
| |||||||
Sbjct 1013 TATTTTATT 1021
> Ahg911014 jgi|Araly1|911014|Al_scaffold_0001_1268
Length=534
Score = 396 bits (214), Expect = 3e-109
Identities = 365/434 (84%), Gaps = 25/434 (6%)
Strand=Plus/Plus
Query 671 TTGGATTCGGTAAAGACAAACTCACAGGCACATACAAGCCCGTTTGGTTATACAACTCTA 730
|||||||||||||||||||| |||| ||||||||||| |||||||||||||||| |||
Sbjct 110 TTGGATTCGGTAAAGACAAAATCACGGGCACATACAAACCCGTTTGGTTATACAGTTCTT 169
Query 731 TAGAAATTGGCCTAG-AAA----A------CG-C--T-ACTACATGCGAGGTTTTCGACT 775
||||||||||||| | ||| | || | | ||||||||||||||||||||||
Sbjct 170 TAGAAATTGGCCTTGAAAACGCGAGGTTTTCGACTTTAACTACATGCGAGGTTTTCGACT 229
Query 776 TTAGCACCAACGCTTGGAGGTATGTTTCACCAGCTGCTCCTTATAGGATTGTTGGTTGCC 835
||| |||| ||||||||||||||||||| ||||| ||||| ||| || || ||||| |
Sbjct 230 TTAACACCGACGCTTGGAGGTATGTTTCTCCAGCCGCTCCCTATCGGGTTTTTGGTAACT 289
Query 836 CCGCACCTGTCTGCGTAGATGGGTCGCTTCATTGGTTCACCGAGTGCGAGGAAACCAAAA 895
|| |||| | || |||||||||||||||||||||||| || ||||||||||||||||
Sbjct 290 CCAAACCTATTTGTATAGATGGGTCGCTTCATTGGTTCAATGACTGCGAGGAAACCAAAA 349
Query 896 TTCTTTCGTTCGATCTTCACACCGAAACCTTTCAAGTTGTCTCTAAAGCTCCCTTTGCCA 955
|||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||| | |
Sbjct 350 TTCTATCGTTCGATCTGCACACCGAAACGTTTCAAGTGGTCTCTAAAGCTCCCTTTACAA 409
Query 956 ATGTAGATGGATTCGAT-ATAGTCATGTGCAACCTCGACAACCGCTTGTGCGTTTCCGAG 1014
||||| | | || ||| || ||||||||||| |||||||||||||| ||||||||| ||
Sbjct 410 ATGTAAACGCTTTTGATCATTGTCATGTGCAATCTCGACAACCGCTTCTGCGTTTCCAAG 469
Query 1015 ATGAAGCTGCCCAACCAAGTGATATGGTCATTCAATTCAGGTAACAAGACATGGCACAAA 1074
||||| ||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 470 ATGAA-CTG-----GC---TGATATGGTCATTCAATTCAGGCAACAAGACATGGCACAAA 520
Query 1075 ATGTGTTCCATTAA 1088
||||||||||||||
Sbjct 521 ATGTGTTCCATTAA 534
> Ahg914216 jgi|Araly1|914216|Al_scaffold_0001_4470
Length=1119
Score = 388 bits (210), Expect = 5e-107
Identities = 380/460 (83%), Gaps = 19/460 (4%)
Strand=Plus/Plus
Query 669 GCTTGGATTCGGTAAAGACAAACTCACAGGCACATACAAGCCCGTTTGGTTATACAACTC 728
||||| |||||||||||||| || | ||||| | ||||||||| ||| ||||||||||
Sbjct 384 GCTTGCATTCGGTAAAGACACTTTCTCCGGCACTTTCAAGCCCGTCTGGCTATACAACTC 443
Query 729 TAT-AGAAATTGGCCTAGAAAACGCTACTACATGCGAGGTTTTCGACTTTAGCACCAACG 787
| | ||| ||| || | ||||||||||||||||||| |||||||||||| |||||| |
Sbjct 444 T-TCAGAGATTAGCATCCAAAACGCTACTACATGCGAAGTTTTCGACTTTTCCACCAATG 502
Query 788 CTTGGAGGTATGTTTCACCAGCTGCTCCTTATAG-GATTGTTGGT-TGCCCCGCA-CCTG 844
||||||||||||| | || ||||||||||| | | | ||||| | ||| | | ||||
Sbjct 503 CTTGGAGGTATGTCACTCCCTCTGCTCCTTATCGTG-TCCTTGGTCT-CCCTG-ATCCTG 559
Query 845 TC-TGCGTAGATGGGTCGCTTCATTGGTTCACCGAGTGCGAGGAAACCAAAATTCTTTCG 903
|| | | ||||||| || ||||||||||||||||| ||| | |||||||||||||| ||
Sbjct 560 TCTTTC-TAGATGGCTCCCTTCATTGGTTCACCGACTGCCAAGAAACCAAAATTCTATCC 618
Query 904 TTCGATCTTCACACCGAAACCTTTCAAGTTGTCTCTAAAGCTCCCTTTGCC-A--ATGTA 960
| ||||||||||||||| |||||||||| |||||||||||||||||||| | ||||
Sbjct 619 ATGGATCTTCACACCGAAGCCTTTCAAGTCATCTCTAAAGCTCCCTTTGCCGACCATGTT 678
Query 961 GAT-GG-ATT-CGATATAGTCATGTGCAACCTCGACAACCGCTTGTGCGTTTCCGAGATG 1017
| | || || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 GTTAGGCCTTACGATATCGTCATGTGCAACCTCGACAACCGCTTGTGCGTTTCCGAGATG 738
Query 1018 AAGCTG-CCCAACCAAGTGATATGGTCATTCAATTCAGGTAACAAGACATGGCACAAAAT 1076
||| || ||||||||| | || ||||| ||||||||| |||||||||||| ||||| |
Sbjct 739 AAG-TGGCCCAACCAACTCATTTGGTCTTTCAATTCACC-AACAAGACATGGGACAAATT 796
Query 1077 GTGTTCCATTAATCTGGATATAACTTCTCGTTGGTTTGGT 1116
||||||||| |||| || | ||||||| | ||||||||
Sbjct 797 CTGTTCCATTGATCTTCATCTCACTTCTCATGGGTTTGGT 836
> Ahg910955 jgi|Araly1|910955|Al_scaffold_0001_1209
Length=1170
Score = 224 bits (121), Expect = 1e-57
Identities = 304/389 (78%), Gaps = 25/389 (6%)
Strand=Plus/Plus
Query 669 GCTTGGATTCGGTAAAGACAAACTCACAGGCACATACAAGCCCGTTTGGTTATACAACTC 728
|||||||||||||| ||||||| | | ||||||||||||||||||||||| || || ||
Sbjct 522 GCTTGGATTCGGTAGAGACAAAGTAAGGGGCACATACAAGCCCGTTTGGTTGTATAATTC 581
Query 729 TAT-AGAAAT-TGGCCTAGAAAACGCTACTACATGCGAGGTTTTCGACTTTAGCACCAAC 786
|| | ||| ||||||||||||| ||| || || || |||||||||||||||||||||
Sbjct 582 -ATCTG-AATATGGCCTAGAAAACATTACCACTTGTGAAGTTTTCGACTTTAGCACCAAC 639
Query 787 GCTTGGAGGTATGTTTCACCA-GCTGCTCCTTATAGGATT-GTTGGTTGCCCCGCACCT- 843
|||||||||| | ||| ||| ||| ||| |||| ||||| || ||| | | |||
Sbjct 640 GCTTGGAGGT-TCCTTCTCCAAGCTTCTCTTTATCGGATTCGT-GGT-GATCATTACCCA 696
Query 844 GTCTGCGTAGATGGGTCGCTTCATTGGTTCACCGAGTGCGAGGAAACCAAAATTCTT-TC 902
|| | |||| ||||| ||| | |||||||| ||||| || |||||||| || || ||
Sbjct 697 GTGTATTTAGAGGGGTCACTTTACTGGTTCACTGAGTGTGAAGAAACCAAGGTT-TTATC 755
Query 903 GTTCGATCTTCACACCGAAACCTTTCAAGTTGTCTCTAAAGCTCCCTTTGCCAATGTA-G 961
|||||||||||||||||||| |||||||| |||| ||| |||||||| || |||| |
Sbjct 756 TTTCGATCTTCACACCGAAACTTTTCAAGTCATCTCAAAAACTCCCTTTCCCCATGTGCG 815
Query 962 ATGGA---T-TCGA-TAT-AGTCATGTGCAACCTCGACAACCGCTTGTGCGTTTCCGAGA 1015
|| | | ||| | | | |||||||| |||||| |||||||||||||| || ||||
Sbjct 816 -TG-ACCCTCTCGGCT-TCAA-CATGTGCATCCTCGATAACCGCTTGTGCGTATCTGAGA 871
Query 1016 TGAAGCTG-CCCAACCAAGTGATATGGTC 1043
|| || |||| |||||| ||||||||
Sbjct 872 CAAAT-TGGCCCACCCAAGTCATATGGTC 899
> Ahg893541 jgi|Araly1|893541|Al_scaffold_0006_1537
Length=963
Score = 159 bits (86), Expect = 4e-38
Identities = 198/247 (80%), Gaps = 28/247 (11%)
Strand=Plus/Plus
Query 846 CTGCGTAGATGGGTCGCTTCATTGGTT---C---ACCGAGTGCGAGGAAACCAAAATTCT 899
||||| ||||||||||||||||||||| | ||||||||| | ||||||||| || |
Sbjct 501 CTGCG-AGATGGGTCGCTTCATTGGTTCACCGAGACCGAGTGCCAAGAAACCAAAGTTAT 559
Query 900 TTCGTTCGATCTTCACACCGAAACCTTTCAAGTTGTCTCTAAAGCTCCCTTTGCCAATGT 959
|| |||||||||||||||||| | | || | |||||||||||| |||| |||| |
Sbjct 560 ATCTTTCGATCTTCACACCGAAGC-T--CA--T---CTCTAAAGCTCCTTTTGTCAAT-T 610
Query 960 A-GATGGATT-CGATATAGTCATGTGCAACCTCGACAACCGCTTGTGCGTTTCCGAGATG 1017
||| || ||| || ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 611 CCGATCC-TTACGAGATCGTCATGTGCAATCTCGACAACCGCTTGTGCGTATCCGAGATG 669
Query 1018 AAGCTG-CCCAACCAAGTGATATGGTCATTC-------AATTCAGGTAACAAGACATGGC 1069
||| || |||| ||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 670 AAG-TGGCCCACCCAAGTGATATGGTCGTTCCTCGTTCAATTCAGACAACAAGACATGGG 728
Query 1070 ACAAAAT 1076
|||||||
Sbjct 729 ACAAAAT 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55307035740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5