BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09660.1
Length=1387
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471067 jgi|Araly1|471067|fgenesh2_kg.1__1021__AT1G09660.1 1910 0.0
> Ahg471067 jgi|Araly1|471067|fgenesh2_kg.1__1021__AT1G09660.1
Length=1329
Score = 1910 bits (1034), Expect = 0.0
Identities = 1245/1342 (93%), Gaps = 34/1342 (3%)
Strand=Plus/Plus
Query 10 taaacacaaaaatagaaaatatcgaaaaTgagatgagagagagaggaggagTCTCTCATC 69
||| |||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 3 TAAGCACAAAAATAGAAAATATCGAAAATGAGAT--GAGAGAGA-GAGGACTCTCTCATC 59
Query 70 GTGAGTAGGGCTTTTGACTCCCT-CCCTACTTTGCCTACTTCTT-CTTCTTCCTCTGTGG 127
||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| | |||
Sbjct 60 GTGCGTAGGGCTTTTGACTCCCTCCCCTACTTTGCCTACTTCTTCCTTCTTCCT-T-TGG 117
Query 128 CCACTCTACACAGTCCACACCTACTTCAAGACACCTTTCTCATCCTTGAGATCGGCGTCA 187
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 118 CCACTCTACACAGTCCACACCTACTT--AGACACCTTTCTCAACCTTGAGATCGGCGTCA 175
Query 188 GATCCTCCGCCGCTTCTCCTCTTCACTATCTCCGTGTTAAAGATGATGGAATCTGGCGCT 247
||||||||||||| ||| |||||||||||||||||||| |||||||||||||| || |||
Sbjct 176 GATCCTCCGCCGCATCTTCTCTTCACTATCTCCGTGTTTAAGATGATGGAATCCGGAGCT 235
Query 248 GGTTTCGTGGCCATGGAAGAGAGGATCTCTCCTGGAAGTTTCTTCCAGTATCCTCTTTCT 307
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 236 GGTTTCGCGGCCATGGAAGAGAGGATCTCTCCTGGAAGTTTCTTCCAGTTTCCTCTTTCT 295
Query 308 GGATTCCGTGCTTCTCCTAATCGATCCCCTTGTCCTCCCTCTGATCGTGAAAGGTACTTG 367
|||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 296 GGATTCCGCGCTTCTCCCAATCGATCCCCTTGTCCTCCCACTGATCGTGAAAGGTACTTG 355
Query 368 ACTGAATTATTGCAAGAGAGACAAAAGTTGGGTCCCTTTTTGCAAGTTATGCCAAATTGC 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ACTGAATTATTGCAAGAGAGACAAAAGTTGGGTCCCTTTTTGCAAGTTATGCCAAATTGC 415
Query 428 TGCAGACTGCTTAATCATGAAATCAGGAGGGTCTCTAGTTTTCCTGATCTTGATAGATAT 487
||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 416 TGCAGACTGCTAAATCAAGAAATCAGGAGGGTCTCTAGTTTTCCTGATCCTGATAGATAT 475
Query 488 GAGCATGGCAGTCCATTTAGATCGCTTGGTCAGCCGACAAATGGAAAGCTTGATTTAGAG 547
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 476 GAGCATGGCAGTCCATTTAGATCGCTTGGCCAGCCGACAAATGGAAAGCTTGATTTAGAG 535
Query 548 GGATGGTCGATGATGCAAGCCGAGGAAAACTGTCACCTCCAGAGAGCTTCTCCATTTCGC 607
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 536 GGATGGTCGATGATGCAAGCGGAGGAAAACTGTCACCTCCAGAGAGCTTCTCCATTTCGT 595
Query 608 GGTCCTTCCCCAGTGGGCTGGATTGGGATGCCGGGACTCCCTAACCCACCCATTGTGAAA 667
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 596 TCTCCTGCCCCAGTGGGCTGGATTGGGATGCCAGGACTCCCTAACCCACCCATTGTGAAA 655
Query 668 AAAGTGATTAGACTTGATGTCCCAGTGGATAAATATCCAAGCTATAATTTTGTTGGGAGG 727
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 656 AAAGTGATTAGACTTGATGTGCCAGTGGATAAATATCCAAGCTATAATTTTGTTGGGCGG 715
Query 728 ATTCTTGGGCCACGTGGAAACTCCCTAAAAAGAGTTGAGCTAGCAACCCACTGCAGGGTG 787
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATTCTCGGTCCACGTGGAAACTCCCTAAAAAGAGTTGAGCTAGCAACCCACTGCAGGGTG 775
Query 788 TTTATCAGAGGACGAGGATCTGTGAAGGATACTGTCAAGGAGGAAAAA-TTAAAAGGTAA 846
||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 776 TTTATTAGAGGGCGAGGATCTGTGAAGGATACTGTCAAGGAGGAAAAACTTAAA-GGTAA 834
Query 847 GCCAGGGTACGAGCATCTCTGCGAGCCACTACATGTACTGATCGAGGCCGAGCTTCCAGA 906
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 835 GCCAGGGTACGAGCATCTCTGTGAGCCACTACATGTACTGATCGAGGCCGAGCTTCCAGA 894
Query 907 AGACATAATAAACTCTCGATTGGAGCATGCAGTGCATTTCCTGGAATCACTCCTGAAGCC 966
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 895 AGACATAATAAACTCTCGATTGGAACATGCAGTGCATTTCCTGGAATCACTCCTAAAGCC 954
Query 967 GATGGACGAGTCAATGGATCACTACAAGAGGGAACAGCTGAAGGAGTTAGCGGCTTTGAA 1026
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 955 GATGGACGAATCAATGGATCACTACAAGAGGGAACAGCTGAAAGAGTTAGCAGCTCTGAA 1014
Query 1027 TGGTACACTAAGGGAGGAGAGTCCGAGTCCGAGCTTGAGCCCTTGTTTGAGCCCCAGCAT 1086
|||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 1015 TGGTACACTAAGGGAGGAGAGTCCAAGTCCGAGCTTGAGCCCTTGTTTGAGTCCGAGCAT 1074
Query 1087 GTCCCCTTTCAACAGCAAGCGTGCTAAGACAGAGATATGATCAAGAGAA-ACC--ACTAG 1143
|||||||||||||||||||||||||||||| | || | || |||| ||| | ||
Sbjct 1075 GTCCCCTTTCAACAGCAAGCGTGCTAAGACTG-GACA--ATAAAGATTTTACCTGAG-AG 1130
Query 1144 -TGCATGGGTCTTGTGG-G-CAGGATC-ATGAGTTTGCTAAGTTCTAACGTTTGGACTCT 1199
|| || | |||| | | ||| | | ||| ||| ||||||||||||||||||||||
Sbjct 1131 ATG-ATCAATGTTGTTGAGACAGAAACCATGTGTT--CTAAGTTCTAACGTTTGGACTCC 1187
Query 1200 TGAATTAATTTATTTTGTCATTAACTTTATTCTTTATTTTTG----TT--G--G-TTAGC 1250
| |||||||||||||||||||||| ||||||||||||||||| || | | ||| |
Sbjct 1188 TCAATTAATTTATTTTGTCATTAAGTTTATTCTTTATTTTTGAAAATTTTGTTGGTTAAC 1247
Query 1251 TGAGATGACCATTAACCAGTGGGTAATAAACTAATAATGGTGTTTATGAAATTGTAATCT 1310
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1248 TGAGATGACCATTGACCAGTGGGTAATAAACTAATAATGGTGTTTATGAAAATGTAATCT 1307
Query 1311 CCTTCTCAATCATTGTAACCTT 1332
| |||||||||||||| |||||
Sbjct 1308 CGTTCTCAATCATTGTGACCTT 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51840823445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5