BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G09665.1

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg910676 jgi|Araly1|910676|Al_scaffold_0001_930                     752    0.0  


> Ahg910676 jgi|Araly1|910676|Al_scaffold_0001_930
Length=504

 Score =  752 bits (407),  Expect = 0.0
 Identities = 455/479 (95%), Gaps = 0/479 (0%)
 Strand=Plus/Plus

Query  1    ATGAAAAGGAGTAGTAGTAATAGGAAGATCCAAGTGTTCATCAATTTCCGGGGAGAGGAG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAAAAGGAGTAGTAGTAATAGGAAGATCCAAGTGTTCATCAATTTCCGGGGAGAGGAG  60

Query  61   CTACGCTGCAGCTTTGTGAGCCACCTCGTTGACGCTTTTAAAAGACATGGAATCAACTTC  120
            |||||||||||||| ||||||||||||||||| || |||||||| ||||| |||||||||
Sbjct  61   CTACGCTGCAGCTTCGTGAGCCACCTCGTTGAGGCCTTTAAAAGGCATGGGATCAACTTC  120

Query  121  TTCATAGACAAAGACGAACAAAAAGGGAAAGACCTCAAACATCTCTTTGCAAGGATCAAG  180
            ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct  121  TTCATAGACAAAGACGAACAAAAGGGGAAAGACCTTAAACATCTCTTTGCAAGGATCAAG  180

Query  181  CAATCGAGGATGGCTCTCACCATATTTTCCAAAAGATACGCAGAGTCAAGCTGGTGCCTG  240
            |||||||||||||| ||| | |||||||| ||||| ||||||||||||||||||||||||
Sbjct  181  CAATCGAGGATGGCCCTCGCTATATTTTCAAAAAGGTACGCAGAGTCAAGCTGGTGCCTG  240

Query  241  GACGAGCTTGCAAGGATCAAGAAAAGAGCCGATAAATGCAAGCTACGAGTGGTTCCTATC  300
            ||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||
Sbjct  241  GACGAGCTTGCAAGGATCAAGAAAAGAGCCGATCAACGCAAGCTACGAGTGGTTCCCATC  300

Query  301  TTCTTTAAAGTGAAGGCAGAGTCTGTTAGATATCAAAAGGCTGAGTTTGGTCGCAACTTC  360
            ||||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||
Sbjct  301  TTCTTCAAAGTGAAGGCAGAGTCTGTGAGATACCAAGAGGCTGAGTTTGGTCGCAACTTC  360

Query  361  TGGAGGTTGGCTAAGACTTCGAGTGGAGAACAAATCAAGAAATGGAAGGAAGCTTTAGAG  420
            |||||||||||||||||||| ||||| ||||| ||||||| ||||||||||||| |||||
Sbjct  361  TGGAGGTTGGCTAAGACTTCCAGTGGTGAACAGATCAAGAGATGGAAGGAAGCTCTAGAG  420

Query  421  TCTGTTTCTGACAAGGTGGGCTTAACGTTAGGCGACAAAAGAACAAACAAATGGGTCCA  479
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  TCTGTTTCTGACAAGGTGGGCTTAACGTTAGGCGACAAAAGAACAAACAAATGGGTCCA  479



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18085749186


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5