BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09680.1
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919726 jgi|Araly1|919726|scaffold_101007.1 2754 0.0
> Ahg919726 jgi|Araly1|919726|scaffold_101007.1
Length=1865
Score = 2754 bits (1491), Expect = 0.0
Identities = 1718/1829 (94%), Gaps = 10/1829 (1%)
Strand=Plus/Plus
Query 1 ATGTTCAGAATCGAAATTCTAAGATGCACACTCTCTCAATCTCACCCACAGAGATTCTCT 60
|||||||||| ||||||||||||| |||||||||||| |||||| ||||||||||| |||
Sbjct 22 ATGTTCAGAAACGAAATTCTAAGAAGCACACTCTCTCGATCTCAGCCACAGAGATTTTCT 81
Query 61 CGTGCATCAT--T-CCTCTTGTCAACATGGTACTCTCAAGAATCTGTCTCCGCGGCAGAC 117
|||| ||| | | |||||| || ||||||||||||| ||||||| ||| | ||||||
Sbjct 82 CGTGTATCGTCGTCCCTCTTATCGACATGGTACTCTCCAGAATCTATCT---CAGCAGAC 138
Query 118 AACGACGATGACCCAGTTCTTGTTAAACTCTCAGTTGCCATCAGAGATTCTTACAAGGAT 177
|| || |||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 139 GACAACAATGACCCAGTTCTTGTCAAACTCTCAGTCGCCATCAGAGATTCTTACAAGGAT 198
Query 178 CCGCCGTTGGAGTTCTCTTCGTTCACTGACTGCCCCTCTATCAGAAAGGTCCTGCCTTCG 237
||||| ||||| |||||||||||| ||| |||| | ||||||||||| ||||||||||||
Sbjct 199 CCGCCATTGGAATTCTCTTCGTTCGCTGCCTGCTCTTCTATCAGAAACGTCCTGCCTTCG 258
Query 238 CTCAGCGTTCATCATGTGGTTGATCTCATCAACCATAACCCTCTCTCCCTCCCACAACGT 297
|||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| |||
Sbjct 259 CTCAGCGTTCGTCATGTTGTTGATCTCATCAACCGTAACCCTCTCTCCCTCCCACACCGT 318
Query 298 TCTATCTTCGCTTTCTTCAAATTCATCTCATCTCAGCCTGGATTTCGTTTTACCGTTGAG 357
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 319 TCTATCTTCGCTTTCTTCAAATTCATCTCATCTCAGCCTGAATTTCGTTTTACCGTTGAG 378
Query 358 ACTTACTTCGTCTTGGCTCGTTTTCTTGCTGTTCACGAAATGTTCACCGAAGCACAGTCA 417
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 379 ACTTACTTCGTCATGGCTCGTTTTCTTGCTATTCACGAAATGTTCGTGGAAGCACAGTCA 438
Query 418 CTTATCGAGCTCGTCGTCTCTCGTAAAGGCAAAAACTCAGCTTCTTCAGTTTTCATTTCT 477
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 439 CTTATCGAGCTCGTCGTCTCTCGTAAAGGCAAAAACTCGGCTTCTTCAGTTTTCATCTCT 498
Query 478 TTGGTAGAAATGAGAGTAACACCTATGTGTGGTTTCCTTGTTGATGCTTTGATGATCACG 537
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||
Sbjct 499 TTGGTAGAAATGAGAGGAACACCTATGTGTGATTTCCTTGTTGATGCTTTGATGATTACG 558
Query 538 TACACGGATCTAGGTTTCATACCCGATGCTATTCAATGTTTTAGGCTATCTCGGAAGCAT 597
|||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 559 TACATGGATCTAGGATTCATACCCGATGTTATTCAATGTTTTAGGCTATCTCGGAAGCAT 618
Query 598 AGGTTT-GATGTTCCAATTCGTGGCTGTGGCAATTTGCTTGATCGGATGATGAAGCTGAA 656
| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 A-ATTTCGTTGTTCCAATTCGTGGCTGTGGCAATTTGCTTGATCGGATGATGAAGCTGAA 677
Query 657 TCCAACTGGGACTATTTGGGGATTCTATATGGAGATTTTGGATGCTGGGTTTCCCTTGAA 716
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 678 TCCAACTGGGACTGTTTGGGGATTTTATATGGAGATTTTGGATGCTGGGTTTCCCTTGAA 737
Query 717 TGTGTACGTTTTCAATATTTTGATGAACAAA-TTCTGTAAAGAAGGCAATATATCTGATG 775
||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct 738 TGTGTACGTTTTCAATATTTTGATGAACAAAATT-TGTAAAGAAGGCAATATATGTGATG 796
Query 776 CACAGAAGGTGTTCGACGAAATTACTAAAAGGAGTTTGCAGCCTACAGTGGTTAGTTTCA 835
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 797 CCCAGAAGGTGTTCGACGAAATTACTAAAAGGAGTTTGCGGCCTACAGTGGTTAGTTTCA 856
Query 836 ACACTTTGATAAATGGGTATTGTAAAGTAGGAAACTTGGATGAAGGGTTTAGGCTCAAAC 895
|||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| ||||
Sbjct 857 ACACTTTGATAAATGGGTATTGTAAAGTGGGAAACTTGGATGTAGGGTTCAGGCTTAAAC 916
Query 896 ATCAGATGGAGAAAAGCAGAACACGCCCAGATGTTTTCACCTATAGTGCCTTGATTAATG 955
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 917 ATCATATGGAGAAAAGCAGAACACGTCCAGATGTTTTCACCTATAGTGCCTTGATTAATG 976
Query 956 CATTGTGTAAAGAGAACAAAATGGATGGAGCACATGGCCTGTTTGATGAGATGTGTAAGA 1015
|| ||||||| |||||||||||||| ||||||||| |||||||| ||||||||||| |||
Sbjct 977 CACTGTGTAAGGAGAACAAAATGGACGGAGCACATCGCCTGTTTTATGAGATGTGTGAGA 1036
Query 1016 GAGGGTTGATCCCAAATGATGTTATTTTCACTACTTTGATTCATGGTCATAGTAGGAATG 1075
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1037 GAGGGTTGATCCCAAATGATGTTATTTTCAATACTTTGATTCATGGTCATAGTAGGAATG 1096
Query 1076 GAGAGATTGACTTGATGAAAGAAAGTTATCAGAAGATGTTAAGTAAGGGTCTGCAGCCTG 1135
|| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1097 GACAGATTGACTTAATGAAAGAAAGTTATCAGAAGATGTTAAGTAAGGGTCTTCAGCCTG 1156
Query 1136 ATATTGTTTTATATAATACTTTAGTAAATGGCTTTTGTAAGAACGGGGATTTGGTGGCTG 1195
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1157 ATATTGTTTTATATAATACTTTAGTAAATGGCTTTTGCAAGAACGGGGATTTGGTGGCCG 1216
Query 1196 CAAGGAATATAGTTGATGGAATGATTCGTAGAGGTCTGAGGCCCGACAAAATTACATACA 1255
||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||||||| |
Sbjct 1217 CAAGGAATATAGTTGATGGGATGATCCGTAGAGGTCTGAGGCCTGACAAAGTTACATATA 1276
Query 1256 CAACTCTTATAGATGGATTTTGTAGAGGAGGAGATGTAGAAACAGCTTTGGAGATAAGGA 1315
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1277 CGACTCTTATAGATGGATTTTGTAGAGGAGGAGATGTAGACACAGCTTTGGAGATAAGGA 1336
Query 1316 AGGAGATGGATCAGAATGGGATAGAACTCGATAGGGTGGGTTTCTCAGCCCTTGTTTGTG 1375
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 1337 AGGAAATGGATCAGAATGGGATAGAACTTGATAGGGTGGGTTTCTCAGCTCTTATTTGTG 1396
Query 1376 GAATGTGCAAAGAAGGAAGAGTCATTGATGCTGAAAGAGCTTTAAGAGAGATGCTGCGAG 1435
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1397 GAATGTGCAAAGAAGGAAGAGTCATTGATGCTGAAAGAGCTTTGAGAGAGATGCTGCGAG 1456
Query 1436 CTGGTATTAAACCGGATGATGTAACCTATACAATGATGATGGATGCATTCTGTAAGAAAG 1495
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 CTGGTATGAAGCCGGATGATGTAACCTATACAATGATGATGGATGCATTCTGTAAGAAAG 1516
Query 1496 GTGATGCTCAGACCGGTTTCAAATTGCTCAAGGAAATGCAGAGCGATGGGCATGTTCCTA 1555
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 1517 GTGATGCTCAAACCGGTTTCAAATTGCTTAAGGAAATGCAGAGTGATGGGCATATTCCTA 1576
Query 1556 GTGTTGTGACGTATAATGTTCTGCTGAATGGTCTATGCAAATTGGGACAGATGAAGAATG 1615
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1577 ACGTTGTGACGTATAATGTTCTGCTGAATGGACTATGCAAATTGGGACAGATGAAGAATG 1636
Query 1616 CTGATATGTTGCTAGATGCCATGCTTAATATAGGGGTTGTTCCAGATGACATCACATACA 1675
|||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1637 CTGACATGTTGCTAGATGCCATGCTTAATGTAGGGGTTGTTCCGGATGACATCACATACA 1696
Query 1676 ACACTCTATTGGAAGGTCACCATAGACATGCAAATTCATCGAAGCGTTATATACAGAAAC 1735
|||| |||||||||||||||||||||||||||||| ||||||||| ||||| ||| ||||
Sbjct 1697 ACACCCTATTGGAAGGTCACCATAGACATGCAAATGCATCGAAGCATTATAAACAAAAAC 1756
Query 1736 CGGAGATAGGTATTGTAGCTGACTTGGCTTCTTACAAATCAATAGTCAATGAGCTAGATA 1795
| |||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1757 CTGAGATAGGGATTGTAGCTGACTTGGCTTCTTACAAATCACTAGTCAATGAGCTCTATA 1816
Query 1796 GAGCTTCAAAAGATCACCGGAACAGATAA 1824
|||||||||||||||||||||||||||||
Sbjct 1817 GAGCTTCAAAAGATCACCGGAACAGATAA 1845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5