BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09690.1
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919727 jgi|Araly1|919727|scaffold_101008.1 902 0.0
Ahg471057 jgi|Araly1|471057|fgenesh2_kg.1__1011__AT1G09590.1 872 0.0
Ahg474849 jgi|Araly1|474849|fgenesh2_kg.1__4803__AT1G57660.1 623 6e-178
Ahg475457 jgi|Araly1|475457|fgenesh2_kg.2__587__AT1G57860.1 612 1e-174
> Ahg919727 jgi|Araly1|919727|scaffold_101008.1
Length=549
Score = 902 bits (488), Expect = 0.0
Identities = 530/550 (96%), Gaps = 4/550 (1%)
Strand=Plus/Plus
Query 12 ATCTAGGGTTTTAGTTGTCGCACGAGGAGGAAAAATGCCAGCGGGTCATGGAGTTCGGGC 71
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1 ATCTAGGGTTTTAGTTGTCGCACGAGGAGAAAAAATGCCGGCGGGTCATGGAGTTCGGGC 60
Query 72 GAGAACGAGGGATCTGTTCGCGAGGCCATTCAGGAAGAAGGGTTACATTCCACTCTCGAC 131
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 61 GAGAACGAGGGATCTGTTCGCGAGGCCGTTCAGGAAGAAGGGTTATATTCCACTATCGAC 120
Query 132 TTACCTGAGAACCTTCAAGGTCGGCGATTACGTCGATGTGAAGGTGAATGGTGCGATCCA 191
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 GTACCTGAGAACCTTCAAGGTCGGCGACTACGTCGATGTGAAGGTGAATGGTGCGATCCA 180
Query 192 CAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTATCTGGAACGTCACTAA 251
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 181 CAAGGGTATGCCTCACAAGTTCTACCACGGTCGTACTGGTCGTGTCTGGAACGTCACCAA 240
Query 252 ACGCGCCGTCGGTGTTGAAGTCAACAAACAGATTGGCAACAGGATCATAAGGAAGAGGAT 311
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCGTGCCGTCGGTGTTGAAGTCAACAAACAGATTGGCAACAGGATCATAAGGAAGAGGAT 300
Query 312 TCATGTGCGTGTGGAGCATGTGCAGCAATCAAGATGTGCTGAGGAGTTCAAGCTGAGGAA 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCATGTGCGTGTGGAGCATGTGCAGCAATCAAGATGTGCTGAGGAGTTCAAGCTGAGGAA 360
Query 372 GAAGAAGAATGATGAGCTCAAGGCTGCAGCCAAAGCCA-ATGGTGAGACCATCAGCACCA 430
||||||||| |||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct 361 GAAGAAGAACGATGAGCTCAAGGCTGCAGCCAAAGCCACA-GGCGAGACCATCAGCACCA 419
Query 431 AGAGACAGCCTAAAGGACCCAAACCAGGATTCATGGTCGAAGGAATGACCTTGGAGACTG 490
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGAGACAGCCTAAGGGACCCAAACCAGGATTCATGGTCGAAGGAATGACCTTGGAGACTG 479
Query 491 TCACTCCAATCCCGTACGATGTCGTCAACGATCTCAAGGGAGGCTATTAGTTCTATCTTC 550
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 480 TCACTCCAATCCCTTACGATGTTGTCAACGATCTCAAGGGAGGCTATTAGTTCTATCTTC 539
Query 551 CCAGT-GTTT 559
| ||| ||||
Sbjct 540 C-AGTTGTTT 548
> Ahg471057 jgi|Araly1|471057|fgenesh2_kg.1__1011__AT1G09590.1
Length=617
Score = 872 bits (472), Expect = 0.0
Identities = 496/508 (98%), Gaps = 0/508 (0%)
Strand=Plus/Plus
Query 39 AGGAAAAATGCCAGCGGGTCATGGAGTTCGGGCGAGAACGAGGGATCTGTTCGCGAGGCC 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 25 AGGAAAAATGCCAGCGGGTCATGGAGTTCGGGCGAGAACGAGGGATCTGTTCGCGAGGCC 84
Query 99 ATTCAGGAAGAAGGGTTACATTCCACTCTCGACTTACCTGAGAACCTTCAAGGTCGGCGA 158
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 85 ATTCAGGAAGAAGGGTTACATTCCACTATCGACTTACCTGAGGACCTTCAAGGTCGGCGA 144
Query 159 TTACGTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTACCA 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 TTACGTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTACCA 204
Query 219 CGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACAA 278
|||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct 205 CGGTCGTACTGGTCGTGTCTGGAACGTCACCAAGCGCGCCGTCGGTGTTGAAGTCAACAA 264
Query 279 ACAGATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTGCAGCA 338
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 265 ACAGATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTCCAGCA 324
Query 339 ATCAAGATGTGCTGAGGAGTTCAAGCTGAGGAAGAAGAAGAATGATGAGCTCAAGGCTGC 398
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 325 ATCAAGATGTGCGGAGGAGTTCAAGCTGAGGAAGAAGAAGAACGATGAGCTCAAGGCTGC 384
Query 399 AGCCAAAGCCAATGGTGAGACCATCAGCACCAAGAGACAGCCTAAAGGACCCAAACCAGG 458
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 AGCCAAAGCCAAAGGTGAGACCATCAGCACCAAGAGACAGCCTAAAGGACCCAAACCAGG 444
Query 459 ATTCATGGTCGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCGTACGATGTCGTCAA 518
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 445 ATTCATGGTTGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCTTACGATGTCGTCAA 504
Query 519 CGATCTCAAGGGAGGCTATTAGTTCTAT 546
||||||||| ||||||||||||||||||
Sbjct 505 CGATCTCAAAGGAGGCTATTAGTTCTAT 532
> Ahg474849 jgi|Araly1|474849|fgenesh2_kg.1__4803__AT1G57660.1
Length=687
Score = 623 bits (337), Expect = 6e-178
Identities = 451/507 (89%), Gaps = 3/507 (1%)
Strand=Plus/Plus
Query 38 GAGGAAAAATGCCAGCGGGTCATGGAGTTCGGGCGAGAACGAGGGATCTGTTCGCGAGGC 97
||||||||||||| ||||| || ||||| | |||||||| || ||||||||||| || |
Sbjct 36 GAGGAAAAATGCCGGCGGGACACGGAGTGAGAGCGAGAACAAGAGATCTGTTCGCAAGAC 95
Query 98 CATTCAGGAAGAAGGGTTACATTCCACTCTCGACTTACCTGAGAACCTTCAAGGTCGGCG 157
||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 96 CATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAGGTCGGCG 155
Query 158 ATTACGTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTACC 217
||||||||||||| ||||| ||||| || ||||||||||||||||| || ||||||||||
Sbjct 156 ATTACGTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCGCATAAGTTCTACC 215
Query 218 ACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACA 277
| |||||||||||||| |||||||| |||||||| || ||||| ||||||||||||||||
Sbjct 216 ATGGTCGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAACA 275
Query 278 AACAGATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTGCAGC 337
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 276 AACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAGC 335
Query 338 AATCAAGATGTGCTGAGGAGTTCAAGCTGAGGAAGAAGAAGAATGATGAGCTCAAGGCTG 397
| ||||| |||||||||||||| || || ||||||||| |||| |||| ||| |||||||
Sbjct 336 AGTCAAGGTGTGCTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTAAGGCTG 395
Query 398 CAGCCAAAGCCA-ATGGTGAGACCATCAGCACCAAGAGACAGCCTAAAGGACCCAAACCA 456
|||| ||||| | | || ||||| |||||||||||||||||||||||||| || |||||
Sbjct 396 CAGCTAAAGCTAGA-GGAGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTAAACCG 454
Query 457 GGATTCATGGTCGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCGTACGATGTCGTC 516
|| |||||||| ||||| ||||||||||||||||| ||||| || || |||||||| |||
Sbjct 455 GGTTTCATGGTTGAAGGTATGACCTTGGAGACTGTTACTCCCATTCCTTACGATGTTGTC 514
Query 517 AACGATCTCAAGGGAGGCTATT-AGTT 542
|||||||||||||| ||||||| ||||
Sbjct 515 AACGATCTCAAGGGTGGCTATTGAGTT 541
> Ahg475457 jgi|Araly1|475457|fgenesh2_kg.2__587__AT1G57860.1
Length=559
Score = 612 bits (331), Expect = 1e-174
Identities = 449/507 (89%), Gaps = 3/507 (1%)
Strand=Plus/Plus
Query 38 GAGGAAAAATGCCAGCGGGTCATGGAGTTCGGGCGAGAACGAGGGATCTGTTCGCGAGGC 97
|||||| |||||| ||||| || ||||| | |||||||| || |||||||| ||||| |
Sbjct 8 GAGGAACAATGCCGGCGGGACACGGAGTAAGAGCGAGAACAAGAGATCTGTTTGCGAGAC 67
Query 98 CATTCAGGAAGAAGGGTTACATTCCACTCTCGACTTACCTGAGAACCTTCAAGGTCGGCG 157
||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||
Sbjct 68 CATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTATCTCAGAACCTTCAAGGTCGGCG 127
Query 158 ATTACGTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTACC 217
||||||||||||| ||||| ||||| || || ||||||||||||||||| ||||||||||
Sbjct 128 ATTACGTCGATGTCAAGGTTAATGGAGCTATTCACAAGGGTATGCCTCATAAGTTCTACC 187
Query 218 ACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACA 277
| |||||||||||||| |||||||| |||||||| || ||||| ||||||||||||||||
Sbjct 188 ATGGTCGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAACA 247
Query 278 AACAGATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTGCAGC 337
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 248 AACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAGC 307
Query 338 AATCAAGATGTGCTGAGGAGTTCAAGCTGAGGAAGAAGAAGAATGATGAGCTCAAGGCTG 397
| ||||| |||||||||||||| || || ||||||||| |||| |||| ||| |||||||
Sbjct 308 AGTCAAGGTGTGCTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTAAGGCTG 367
Query 398 CAGCCAAAGCCA-ATGGTGAGACCATCAGCACCAAGAGACAGCCTAAAGGACCCAAACCA 456
|||| ||||||| | || ||||| |||||||| ||||||||||| ||||| |||||||||
Sbjct 368 CAGCTAAAGCCAGA-GGAGAGACTATCAGCACGAAGAGACAGCCGAAAGGTCCCAAACCA 426
Query 457 GGATTCATGGTCGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCGTACGATGTCGTC 516
|| |||||||| ||||| ||||| ||||||||||| ||||| || || |||||||| |||
Sbjct 427 GGTTTCATGGTTGAAGGTATGACATTGGAGACTGTTACTCCCATTCCTTACGATGTTGTC 486
Query 517 AACGATCTCAAGGGAGGCTATT-AGTT 542
|||||||||||||| ||||||| ||||
Sbjct 487 AACGATCTCAAGGGTGGCTATTGAGTT 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27982221078
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5