BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09700.1
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471071 jgi|Araly1|471071|fgenesh2_kg.1__1025__AT1G09700.1 1476 0.0
> Ahg471071 jgi|Araly1|471071|fgenesh2_kg.1__1025__AT1G09700.1
Length=1338
Score = 1476 bits (799), Expect = 0.0
Identities = 911/965 (94%), Gaps = 8/965 (1%)
Strand=Plus/Plus
Query 171 TCTTGCTCTTCGCCGTGCCCTACTAACCTATTATTCGTCTCTTCAGCTACATTCTGCTCG 230
|||| ||| ||||||||||||||| ||| ||| ||| |||||||||||||||||||||||
Sbjct 145 TCTT-CTCATCGCCGTGCCCTACTTACC-ATTCTTCATCTCTTCAGCTACATTCTGCTCG 202
Query 231 TGAAAATGACCTCCACTGATGTTTCCTCTGGTGTTTCCAATTGCTATGTTTTCAAAAGTC 290
||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 203 TGAAAATGACCGCCAATGATGTTTCCTCTGGTGTTTCCAATTGCTATGTGTTCAAAAGTC 262
Query 291 GGTTGCAGGAGTATGCTCAGAAGTACAAGCTCCCAACGCCTGTTTATGAGATC-GTTAAA 349
|||||||||||||||||||||| |||||||||| ||||||||||||||||| | || |||
Sbjct 263 GGTTGCAGGAGTATGCTCAGAAATACAAGCTCCAAACGCCTGTTTATGAGA-CTGTCAAA 321
Query 350 GAAGGCCCTTCACACAAATCTTTATTTCAATCGACTGTGATACTGGATGGTGTCAGATAT 409
||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 322 GAAGGCCCTTCACACAAATCTTTCTTTCAATCGACAGTGATACTGAATGGTGTCAGATAT 381
Query 410 AATTCTTTGCCTGGATTCTTCAATCGTAAGGCTGCAGAGCAATCAGCTGCCGAGGTTGCT 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 AATTCTTTGCCTGGATTCTTCAATCGTAAGGCTGCAGAGCAATCAGCTGCCGAGGTTGCT 441
Query 470 CTCCGGGAATTAGCAAAATCCAGTGAGCTAAGCCAATGTGTTTCACAACCTGTTCACGAA 529
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 442 CTCCAGGAATTAGCAAAATCCAGTGAGCTAAGCCAATGTGTTTCACAACCTGTTCATGAA 501
Query 530 ACGGGATTATGCAAGAACCTACTTCAAGAATACGCTCAAAAGATGAATTACGCGATTCCA 589
||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 502 ACGGGGTTATGCAAGAACCTTCTTCAAGAGTACGCTCAAAAGATGAATTACGCTATTCCA 561
Query 590 TTGTATCAGTGCCAGAAGG-TCGAAACTCTTGGGAGAGTTACACAATTCACATGTACTGT 648
|||||||||||||| |||| | |||||||||||||||| ||||||||||||||| |||||
Sbjct 562 TTGTATCAGTGCCA-AAGGATAGAAACTCTTGGGAGAGCTACACAATTCACATGCACTGT 620
Query 649 AGAGATTGGAGGCATAAAGTACACAGGAGCTGCAACAAGAACTAAAAAAGATGCTGAGAT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 AGAGATTGGAGGCATAAAGTACACAGGAGCTGCAACAAGAACTAAAAAAGATGCTGAGAT 680
Query 709 TAGCGCTGGGAGAACTGCTCTTTTAGCGATCCAGTCAGACA-CTAAAAACAACCTTGCCA 767
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 681 AAGCGCTGGGAGAACTGCTCTTTTAGCGATCCAGTCAGA-ATCTAAAAACAACCTTGCCA 739
Query 768 ACTACAACACTCAGCTTACTGTACTTCCTTGTGAGAAGAAGACAATACAGGCAGCTATCC 827
|||||||||||||||||||||||||||||||||||||||||||| ||| |||| | ||||
Sbjct 740 ACTACAACACTCAGCTTACTGTACTTCCTTGTGAGAAGAAGACATTACTGGCACCGATCC 799
Query 828 CGCTTAAAGAAACCGTCAAGACTCTTAAAGCCAGGAAGGCTCAGTTCAAGAAGAAAGCTC 887
| |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 800 CACTTAAAGAAACCATCAAGACTCCTAAAGCCAGGAAGGCTCAGTTCAAGAGGAAAGCTC 859
Query 888 AGAAAGGAAAACGCACAGTAGCTAAAAATCCTGAAGATATTATCATCCCTCCTCAACCTA 947
||||| |||||||| |||||||| |||||||||||| |||| ||||||||||||||||
Sbjct 860 GGAAAGTAAAACGCAAAGTAGCTATGAATCCTGAAGATGTTATTATCCCTCCTCAACCTA 919
Query 948 CTGATCATTGTCAAAACGATCAGTCAGAGAAAATTGAGACAACGCCAAATCTGGAACCTT 1007
| || |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 920 CCGAGCATTGTCAAAACGATCAGTCTGAGAAAATTGAGACAACGCTAAATCTGGAACCTT 979
Query 1008 CTTCATGCATGAACGGGTTAAAGGAGGCAGCATTTGGGAGTGTGGAGACAGAGAAAATTG 1067
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 CTACATGCATGAACGGGTTAAAGGAGGCAGCATTTGGGAGTGTGGAGACAGAGAAAATTG 1039
Query 1068 AGACAACGCCAAATCTGGAACCTCCTTCATGCATGAACGGGTTAAAGGAGGCAGCATTTG 1127
|||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1040 AGACAAAGCTAAATCTGGAACCTTCTTCATGCATGAACGGGTTAAAGGAGGCAGCATTTG 1099
Query 1128 GGAGT 1132
|||||
Sbjct 1100 GGAGT 1104
Score = 267 bits (144), Expect = 3e-70
Identities = 154/159 (97%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 1142 GAGAAAATTGAGACAACGCCAAATCTGGAACCTCCTTCATGCATGAACGGGTTAAAGGAG 1201
||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 946 GAGAAAATTGAGACAACGCTAAATCTGGAACCTTCTACATGCATGAACGGGTTAAAGGAG 1005
Query 1202 GCAGCATTTGGGAGTGTGGAGACAGAGAAAATTGAGACAACGCCAAATCTGGAACCTTCT 1261
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1006 GCAGCATTTGGGAGTGTGGAGACAGAGAAAATTGAGACAAAGCTAAATCTGGAACCTTCT 1065
Query 1262 TCATGCATGAACGGGTTAAAGGAGGCAGCATTTGGGAGT 1300
|||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TCATGCATGAACGGGTTAAAGGAGGCAGCATTTGGGAGT 1104
Score = 267 bits (144), Expect = 3e-70
Identities = 154/159 (97%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 1226 GAGAAAATTGAGACAACGCCAAATCTGGAACCTTCTTCATGCATGAACGGGTTAAAGGAG 1285
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 946 GAGAAAATTGAGACAACGCTAAATCTGGAACCTTCTACATGCATGAACGGGTTAAAGGAG 1005
Query 1286 GCAGCATTTGGGAGTGTGGAGACAGAGAAAATTGAGACAACGCCAAATCTGGAACCTCCT 1345
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||
Sbjct 1006 GCAGCATTTGGGAGTGTGGAGACAGAGAAAATTGAGACAAAGCTAAATCTGGAACCTTCT 1065
Query 1346 TCATGCATGAACGGGTTAAAGGAGGCAGCATTTGGGAGT 1384
|||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TCATGCATGAACGGGTTAAAGGAGGCAGCATTTGGGAGT 1104
Score = 261 bits (141), Expect = 1e-68
Identities = 153/159 (96%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 1058 GAGAAAATTGAGACAACGCCAAATCTGGAACCTCCTTCATGCATGAACGGGTTAAAGGAG 1117
||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 946 GAGAAAATTGAGACAACGCTAAATCTGGAACCTTCTACATGCATGAACGGGTTAAAGGAG 1005
Query 1118 GCAGCATTTGGGAGTGTGGAGACAGAGAAAATTGAGACAACGCCAAATCTGGAACCTCCT 1177
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||
Sbjct 1006 GCAGCATTTGGGAGTGTGGAGACAGAGAAAATTGAGACAAAGCTAAATCTGGAACCTTCT 1065
Query 1178 TCATGCATGAACGGGTTAAAGGAGGCAGCATTTGGGAGT 1216
|||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TCATGCATGAACGGGTTAAAGGAGGCAGCATTTGGGAGT 1104
Score = 255 bits (138), Expect = 6e-67
Identities = 152/159 (96%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 1310 GAGAAAATTGAGACAACGCCAAATCTGGAACCTCCTTCATGCATGAACGGGTTAAAGGAG 1369
||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 946 GAGAAAATTGAGACAACGCTAAATCTGGAACCTTCTACATGCATGAACGGGTTAAAGGAG 1005
Query 1370 GCAGCATTTGGGAGTGTGGAGACAGAGAAAATTGAGACAACGCCAAATCTGGAATCTTCT 1429
|||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 1006 GCAGCATTTGGGAGTGTGGAGACAGAGAAAATTGAGACAAAGCTAAATCTGGAACCTTCT 1065
Query 1430 TCATGCATGAGCGGGTTAAAGGAGGCAGCATTTGGGAGT 1468
|||||||||| ||||||||||||||||||||||||||||
Sbjct 1066 TCATGCATGAACGGGTTAAAGGAGGCAGCATTTGGGAGT 1104
Score = 137 bits (74), Expect = 2e-31
Identities = 82/86 (95%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 1394 GAGAAAATTGAGACAACGCCAAATCTGGAATCTTCTTCATGCATGAGCGGGTTAAAGGAG 1453
||||||||||||||||||| |||||||||| ||||| ||||||||| |||||||||||||
Sbjct 946 GAGAAAATTGAGACAACGCTAAATCTGGAACCTTCTACATGCATGAACGGGTTAAAGGAG 1005
Query 1454 GCAGCATTTGGGAGTGTGGAGACAGA 1479
||||||||||||||||||||||||||
Sbjct 1006 GCAGCATTTGGGAGTGTGGAGACAGA 1031
Score = 132 bits (71), Expect = 1e-29
Identities = 75/77 (97%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 972 CAGAGAAAATTGAGACAACGCCAAATCTGGAACCTTCTTCATGCATGAACGGGTTAAAGG 1031
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1028 CAGAGAAAATTGAGACAAAGCTAAATCTGGAACCTTCTTCATGCATGAACGGGTTAAAGG 1087
Query 1032 AGGCAGCATTTGGGAGT 1048
|||||||||||||||||
Sbjct 1088 AGGCAGCATTTGGGAGT 1104
Score = 75.0 bits (40), Expect = 2e-12
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1499 TGTCAAGATGGAGTCTTGTGAGTTTGTCATAGTTACTATATGGTTA 1544
||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1105 TGTCAAGATGGAGTCTTGTGAGTTTGTCATAGTAACTATTTGGTTA 1150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63305987190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5