BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09710.2
Length=2154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471072 jgi|Araly1|471072|fgenesh2_kg.1__1026__AT1G09710.1 1336 0.0
> Ahg471072 jgi|Araly1|471072|fgenesh2_kg.1__1026__AT1G09710.1
Length=2108
Score = 1336 bits (723), Expect = 0.0
Identities = 890/966 (92%), Gaps = 29/966 (3%)
Strand=Plus/Plus
Query 96 CATCTTCTTCTCCGATCGTCT-TC---A-C--CGG--T--TTTCTTGGGCATTCCCTCGT 144
||||||||||||||||||||| || | | ||| | ||||||||||| | |||| |
Sbjct 1 CATCTTCTTCTCCGATCGTCTGTCTTTATCGGCGGCTTCCTTTCTTGGGCA-T-CCTCAT 58
Query 145 GCAAT-TGT-TGC-AA-TAAATACGACGAAGATGGTTGCTAATAATAATACTAGTAGCAA 200
|| | || | | || | ||||||||||||||||||| || |||||||||||||
Sbjct 59 GC-GTAAGTCT-CTAATTGAATACGACGAAGATGGTTG------ATGATACTAGTAGCAA 110
Query 201 TCGCAGGAAGAGAATCATTACTGAAGGCGACATCGCCACTCTTTTGCTGAGATATGATAT 260
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 111 TAGCAGGAAGAGAATCATTACTGAAGGCGACATCGCCACTCTTTTGCAGAGATATGATAT 170
Query 261 GGAGACGATACTGAGAATGCTACAGGAGATATCTTATTGTTCCGAAACCAAGATGGACTG 320
| |||||||||||| ||||||||||||||| |||||| ||| |||| ||||||||||||
Sbjct 171 GAAGACGATACTGAAAATGCTACAGGAGATGGCTTATTATTCAGAAATCAAGATGGACTG 230
Query 321 GAATGCGTTGGTGAAGAAGACCACTACCGGAATTACTAATGCTAGAGAGTACCAGTTGCT 380
||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| |||
Sbjct 231 GAATGAGTTGGTGAAGAAGACTACTACCGGAATTACCAATGCTAGAGAGTACCAGTCGCT 290
Query 381 ATGGCGTCATCTTTCTTATCGGCATCCTCTCCTCCCTGTGGAAGATGATGCTCTACCTCT 440
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 291 ATGGCGCCATCTTTCTTATCGGCATCCTCTCCTCCCTGTGGAAGATGATGCTCAACCTCT 350
Query 441 GGACGACGATAGTGACATGGAGTGCGAATTGGAAGCTTCTCCTGCAGTCAGCCATGAAGC 500
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 351 GGACGATGATAGTGACATGGAGTGCGAATTGGAAGCTTCCCCTGCAGTCAGCCATGAAGC 410
Query 501 ATCAGTGGAGGCTATTGCACATGTCAAAGTGATGGCTGCTTCATATGTTCTAAGTGAGTC 560
||||||||||||| |||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 411 ATCAGTGGAGGCTGTTGCGCATGTCAAAGTGATGGCTGCTTCATATGTTCCAAATGAGTC 470
Query 561 TGATATACTCGACGATTCAACAGTTGAGGCTCCCTTGACTATAAACATACCTTATGCTT- 619
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 471 CGATATACTCGACAATTCAACAGTTGAGGCTCCCTTGACTATAAACATACCTTATG-TTC 529
Query 620 TGCCTGAGGGTTCTCAGGAACCATCAGAGTCTCCTTGGTCGTCAAGAGGGATGAATATCA 679
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 530 TGCCTGAGGGTTCTCAGGAACCATCAGAGTCTCATTGGTCATCAAGAGGGATGAATATCA 589
Query 680 ACTTTCCGGTCTGTCTTCAGAAAGTTACATCTACCGAGGGGATGAATGGAAATGGTTCAG 739
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 CCTTTCCTGTCTGTCTTCAGAAAGTTACATCTACCGAGGGGATGAATGGAAATGGTTCAG 649
Query 740 CTGGTATTAGCATGGCTTTTCGGAGGAAAAGGAAAAGATGGTCTGCTGAGGAGGATGAGG 799
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 650 CTGGTAGTAGCATGGCTTTTCGGAAGAAAAGGAAAAAATGGTCTGCTGAGGAGGATGAGG 709
Query 800 AGCTGTTCGCCGCTGTAAAGCGATGTGGTGAAGGGAACTGGGCTCATATTGTTAAGGGAG 859
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 710 AGCTGTTCGCCGCTGTTAAGCGATGTGGTGAAGGGAACTGGGCTCATATCGTTAAGGGAG 769
Query 860 ACTTTAGAGGAGAGAGAACCGCCTCCCAACTCTCGCAGAGGTGGGCGCTTATAAGAAAAA 919
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 770 GCTTTAGAGGAGAGAGAACCGCCTCCCAACTTTCGCAGAGGTGGGCGCTTATAAGAAAAA 829
Query 920 GGTGTCACACTTCGACCTCTGTTAGCCAATGTGGCCTACAAGGAACTGAAGCGAA-ACTA 978
||||| | |||||||||||||||||||||| |||||||||| |||||||||| | | ||
Sbjct 830 GGTGTGATACTTCGACCTCTGTTAGCCAATCTGGCCTACAACCAACTGAAGCGCAGA-TA 888
Query 979 GCAGTTAACCATGCATTATCTTTAGCTCTGGGAAATCGGCCCCCTTCAAATAAGCTTGCA 1038
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 889 GCAGTTAACCATGCAATATCTTTAGCTCTGGGAAATCGGCCCCCTTCAAAAAAGCTTGCA 948
Query 1039 ATAGGT 1044
||||||
Sbjct 949 ATAGGT 954
Score = 774 bits (419), Expect = 0.0
Identities = 553/614 (90%), Gaps = 24/614 (4%)
Strand=Plus/Plus
Query 1560 TATACGGTCTCTAGCTAATGGAAAATTGAAACCTGTTATGGCTTCATCATCTTCCAACAA 1619
||| ||| |||||||||||||| ||||||||||||| | |||||||||||| || |||||
Sbjct 1380 TATGCGGCCTCTAGCTAATGGAGAATTGAAACCTGTGACGGCTTCATCATCCTCGAACAA 1439
Query 1620 ACCTCCTCTCATAGCTCCTCGTTCAGAAGGATCTTCAATGCTTTCTGCTTCCGCCCCCTT 1679
|| ||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1440 ACTTCCTCTCATGGCTCCTCGTTCAGAAGGATCTACAATGCTTTCTGCTTCTGCCCCCTT 1499
Query 1680 GGCTTCTCTATCAAGGATTGTCTCCAATCAGAGAGTTTTTGCA------G-----GCT-C 1727
|||||||| ||| |||||||||||||||||||||||||||||| | ||| |
Sbjct 1500 GGCTTCTCCATCGAGGATTGTCTCCAATCAGAGAGTTTTTGCAGCCTCTGTCCCAGCTAC 1559
Query 1728 TG---T-C--CC--AG-CTACT---GAGATTGTCACTTGCAAACCAGATGGTGGACAGAA 1775
|| | | || || | ||| |||| ||||||||||||||||||||||||||||||
Sbjct 1560 TGTATTACAACCAAAGCCAACTGCAGAGACTGTCACTTGCAAACCAGATGGTGGACAGAA 1619
Query 1776 AGGGCAAGCTCGTGGAAATGAAGCAAGCTCATCGGCTGCAATCCAGCCACATCAAATAAC 1835
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1620 AGGGCAAGCTCGGGGTAATGAAGCAAGCTCATCGGCTGCAATCCAGCCACATCAAATGAC 1679
Query 1836 CTCAAGAAACTTGGAGATTAGCCAGGGAAAGCAGGCTACACAGGCTCAGTCCCCTAATCT 1895
||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1680 CTCAATAAACTCGGAGATTAGACAGGGAAAGCAGGCTACACAGGCTCAGTCCCCTAATCT 1739
Query 1896 CTTGCCTAGGAAAGTTCCAGTAGTTCGGACTGCAGTTCATTGTGCCACTAACCAAAAGTT 1955
||| |||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||
Sbjct 1740 CTTACCTAGGAAAGTTCCAGTAGTTCGGGCTGCAGTTCACTGTGCTACTAACCATAAGTT 1799
Query 1956 GATGGATAAACCATCTGATCAAACTGTAGTACCTATCAGAGGAGCTGGTTCGCAATCTAA 2015
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 GGTGGATAAACCATCTGATAAAACTGTAGTACCTATCAGAGGAGCTGGTTCGCAATCTAA 1859
Query 2016 AGCCAAAGGTGAAGTAAACAGTAAGGTTGGTCCGGTGATCAAAGTGAGTAGTGTTTGCGG 2075
|||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 1860 AGCCAAAGATGAAGTAAACAGTAAGGTTGGTCCGGCAATTAAAGTGAGTAGTGTATGCGG 1919
Query 2076 AAAACCCCTTGAGGTTGCAACTGTGGCAGGGACCGGACAGGGTGTTTAGTTCTTTGACAA 2135
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1920 AAAACCTCTTGAGGTTGCAACTGTGGCCGGGACCGGACAGGGTGTTTAGTTCTTTGACAT 1979
Query 2136 AATCGTTGGATACT 2149
|||||| |||||||
Sbjct 1980 AATCGTCGGATACT 1993
Score = 617 bits (334), Expect = 8e-176
Identities = 379/401 (95%), Gaps = 2/401 (0%)
Strand=Plus/Plus
Query 1162 GGTCTTATGCCAACGACGT-CATCTTGTACCATCACAGAAACGGAAGCGAATGGGGGAAG 1220
||| ||||||||||||| | ||||||||| |||||||||| ||||||| |||||||| ||
Sbjct 952 GGTGTTATGCCAACGAC-TACATCTTGTAGCATCACAGAACCGGAAGCCAATGGGGGCAG 1010
Query 1221 TTCTTCTCAAGGTCAACAACAGTCCAAACCAATTGTTCAAGCATTGCCTCGGGCAGGAAC 1280
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1011 CTCTTCTCAAGGTCAACAACAGTTCAAACCAATTGTTCAAGCATTGCCTCGGGCAGGAAC 1070
Query 1281 ATCACTTCCGGCTGCAAAGTCTCGAGTTGTTaaaaaaaCAACAGCAAGCTCCACTTCCAG 1340
||||||||||| | |||| |||||||||||||| ||| |||| |||||||||||||||||
Sbjct 1071 ATCACTTCCGGGTTCAAAATCTCGAGTTGTTAAGAAATCAACTGCAAGCTCCACTTCCAG 1130
Query 1341 ATCGGATCTTATGGTAACAGCTAATTCAGTAGCTGCAGCTGCATGCATGGGTGATGTATT 1400
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 ATCGAATCTTATGGTAACAGCTAATTCAGTAGCTGCAGCTGCATGCATGGGTGATGTATT 1190
Query 1401 GACTGCTGCATCAGGACGAAAGGTCGAACCTGGAAAAACTGATGCTCCACGAGTGCCAAA 1460
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1191 GACTGCTGCATCAGGACCAAAGGTCGAACCTGGAAAAACTGATGCTCCACTAGTGCCAAA 1250
Query 1461 GACTAAACCTGTAAAACATGCTTCTACAGTCTGCATGCCTCAGCCCTCAGGTAGCCTCTC 1520
|||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1251 GACTAAACCTGTAAAAAATGCTTCTACAGCCTGCATGCCTCGGCCCTCAGGTAGCCTCTC 1310
Query 1521 CATGCCAAAGGTTGAACCAGGAACGAGTGTTGCCGCCTCTA 1561
||||||||||||||||||||||||||||||||| |||||||
Sbjct 1311 CATGCCAAAGGTTGAACCAGGAACGAGTGTTGCGGCCTCTA 1351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81056041360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5