BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09720.1
Length=2787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312011 jgi|Araly1|312011|fgenesh1_pm.C_scaffold_1000791 4207 0.0
Ahg475432 jgi|Araly1|475432|fgenesh2_kg.2__562__AT1G58210.1 538 8e-152
> Ahg312011 jgi|Araly1|312011|fgenesh1_pm.C_scaffold_1000791
Length=2784
Score = 4207 bits (2278), Expect = 0.0
Identities = 2626/2795 (94%), Gaps = 19/2795 (1%)
Strand=Plus/Plus
Query 1 ATGTTGCAGAGAGCAGCGAGCAATGCGTATTCATGGTGGTGGGCCAGCCACATACGCACA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTGCAGAGAGCAGCGAGCAATGCGTATTCATGGTGGTGGGCCAGCCACATACGCACA 60
Query 61 AAACAATCCAAATGGCTCGAACACAATCTCCAAGATATGGAGGAGAAGGTAAAGTACACA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAACAATCCAAATGGCTCGAACACAATCTCCAAGATATGGAGGAGAAGGTAAAGTACACA 120
Query 121 CTTAAGATCATTGATGGAGATGGAGACAGTTTTGCTAAAAGAGCGGAGATGTATTACCGT 180
||||||||||| |||| ||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 121 CTTAAGATCATAGATGAAGATGGAGACACTTTTGCTAAAAGAGCAGAGATGTATTACCGT 180
Query 181 AAAAGGCCAGAGATTGTCAATTTCGTGGAAGAAGCATTTCGTTCATACCGTGCTTTAGCA 240
|||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 181 AAAAGGCCTGAGATTGTAAATTTCGTGGAAGAAGCGTTTCGATCATACCGTGCTTTAGCA 240
Query 241 GAACGCTATGATCATTTGTCCACAGAACTTCAAAGTGCCAATCATATGATCGCTACCGCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAACGCTATGATCATTTGTCCACAGAACTTCAAAGTGCCAATCATATGATCGCTACCGCT 300
Query 301 TTCCCTGAACATGTTCCATTTCCTCTTGTtgatgatgatgacgatgatgatgatgatAAT 360
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 301 TTCCCTGAACATGTTCCATTTCCTCTTGTTGATGATGATGACGACGATGGTGATGAT--- 357
Query 361 CCCAAGAAACCACCTAAGCATCTTCATCTCATTCCCAGTGGAACTAACATACCACAAGTC 420
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 358 CCCAAGAAACCACCTAAGCATCTTCATCTCATTCCCACTGGAACCAACATACCACAAGTC 417
Query 421 CCTGAGGTTCCCAAGAAAGAGTTCAAGAGCCAATCTCTGATGGTGTTGTCGAGAAAGGAA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 418 CCTGAGGTTCCCAAGAAAGAGTTCAAGAGCCAATCTCTGATGGTGTTGTCGAAAAAGGGA 477
Query 481 CCTGGTGTTTTGCAAAGTTCGGAAACATCTTCTGCATTGGTGAGTTCCGGATTGAGTAGA 540
|||| ||||||| ||||||||| | | ||||||||||||||||||||||||||||||| |
Sbjct 478 CCTGATGTTTTGAAAAGTTCGGTATCTTCTTCTGCATTGGTGAGTTCCGGATTGAGTAAA 537
Query 541 GAAGAGGCATTGGAGGAGATCGATAAGATCCATAAGGGGATCTTGGTGCTGCAGACTGAG 600
||||||||| ||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 538 GAAGAGGCACTGGAGGAGATCGATAAGATTCACAAGGGTATCTTGGTGCTGCAGACTGAG 597
Query 601 AAGGAGTTTGTGAGAAGTTCTTATGAGCAGTCCTATGATAGGTATTGGAATTTGGAGAAT 660
|||||||||||||| |||||||||||||| || ||||| |||||||||||||| ||||||
Sbjct 598 AAGGAGTTTGTGAGGAGTTCTTATGAGCAATCTTATGAAAGGTATTGGAATTTAGAGAAT 657
Query 661 GAAGTTGAAGAAATGCAGAAGAGAGTTTGCAGTTTACAAGATGAGTTTGGGGTTGGTGGA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 658 GAAGTTGAAGAAATGCAGAAGAGAGTTTGCAGTTTACAAGATGAGTTTGGGGTTGGTGCA 717
Query 721 GAGATCGAAGATGGTGAAGCTAGGACGCTGGTGGCAACCGCTGCTCTAAGCTCTTGTAAA 780
||||||||||||| ||||||||||||||||||||||| | ||||||||||||| ||||||
Sbjct 718 GAGATCGAAGATGCTGAAGCTAGGACGCTGGTGGCAAGCACTGCTCTAAGCTCCTGTAAA 777
Query 781 GAGACAATTGCTAAGCTTGAGGAGACGCAGAAGCGATTTTCTGAAGACGCCGGAATTGAG 840
||||||||||||||||||||||||||||||| || |||||| ||||| || | |||||||
Sbjct 778 GAGACAATTGCTAAGCTTGAGGAGACGCAGAGGCTATTTTCAGAAGATGCAGAAATTGAG 837
Query 841 AAGGAAAGGATTGATACTGCAACAGAAAGGTGTGAAGCACTGAAGAAAAAGTTTGAGATT 900
|||| ||||||||||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 838 AAGGGAAGGATTGATACTGCAACAGAGAGGTTTGAAGCACTGAAGACCAAGTTTGAGATT 897
Query 901 AAGGTAGAAGAACAAGCCAAGAAAGCTTTTCATGGTCAAGAATCGAGTTATGAATCTGTG 960
|| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 898 AAAGTAGAAGAACAAGCAAAGAAAGCTTTTGATGGTCAAGAATCGAGTTATGAATCTGTG 957
Query 961 AAAGAATCGAGACAGATTGATTTGAATGAGAACTTGAGTAATGTTGACTTTGCAGAGAAG 1020
|||||||||||| || |||||||||||||||||||||||||| | |||||| || |||||
Sbjct 958 AAAGAATCGAGAGAGGTTGATTTGAATGAGAACTTGAGTAATATGGACTTTACACAGAAG 1017
Query 1021 ATAGATGAGCTTGTAGAGAAAGTGGTTTCTCTGGAAACAACAGCTTTGTCTCATACGGCT 1080
|||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1018 ATAGATGAACTTGTAGAGAGAGTGGTTTCTCTGGAAACAACAGCGTTGTCTCATACGGCA 1077
Query 1081 TTGTTAAAGACATTAAGATCAGAGACAAATGAGTTACAGGACCATATCCGTGATGTAGA- 1139
||| |||||||||||||| |||| ||| |||||||||| || |||||||||| | ||||
Sbjct 1078 TTGGTAAAGACATTAAGAACAGATACAGATGAGTTACATGAACATATCCGTGGTTTAGAA 1137
Query 1140 GAAAGACAAGGCATGTCTTGTATCAGACTCCATGGACATGAAGAAAAGGATAACGGTCCT 1199
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1138 GAA-GACAAGGCATGTCTTGTATCAGACTCCATAGACATGAAGAAAAGGATAACGGCCCT 1196
Query 1200 TGAAGATGAGCTAAGAAAAGTTAAAAACCTGTTCCAAAGAGTGGAAGACCAGAACAAGAA 1259
||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1197 TGAAGATGAGCTAAGCAAAGTTAGAAACCTGTTCCAGAGAGTGGAAGACCAGAACAAGAA 1256
Query 1260 TCTTCACAAGCACTTGACTGAAGCTAATAGTACAGCTAAGGACTTATCAGGGAAGTTACA 1319
|||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1257 TCTTCAGAAGCACTTGACTGAAGCTAATAGCACAGCTAAGGACTTATCAGGAAAGTTACA 1316
Query 1320 GGAAGTGAAAATGGATGAAGATGTCGAAGGTGATGG-ACTTAACCCAGAGGACA-TCCAG 1377
|||||||||||||||||||||||||||||||||||| | ||||||| || | | |||||
Sbjct 1317 GGAAGTGAAAATGGATGAAGATGTCGAAGGTGATGGGA-TTAACCCGGAAG-CTGTCCAG 1374
Query 1378 GAGGAGGATACT-GTTGAGGATTCGGATTCAATATCAAACGAGAGAGAGATAAAGAATGC 1436
||||||||| || || ||||||| ||||||||| ||||||| | |||||||||||| |||
Sbjct 1375 GAGGAGGATCCTAGT-GAGGATTTGGATTCAATCTCAAACGGGGGAGAGATAAAGAGTGC 1433
Query 1437 AGAGGAAATTAAAGAGGCCATGGTAATCAAACAGAGCAGAGATCAAGAGTCGATGCAGGA 1496
||||||||||||||||||||| ||| ||||||| || ||||||||||||||| |||||||
Sbjct 1434 AGAGGAAATTAAAGAGGCCATTGTAGTCAAACATAGTAGAGATCAAGAGTCGGTGCAGGA 1493
Query 1497 AGAGAAATCAGAGACAAGAGACTCTTGTGGTGGTTTATCAGAAACAGAAAGCACTTGCTT 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 AGAGAAATCAGAGACAAGAGACTCTTGTGGTGGTTTATCAGAAACAGAAAGCACTTGCTT 1553
Query 1557 TGGTACAGAGGCGGAAGATGAGGAGAGGAGAAACTGGAGGCAGTTGTTACCCGCAGATGG 1616
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1554 TGGCACAGAGGCGGAAGATGAGGAGAGGAGAAACTGGAGGCGGTTGTTACCCGCAGATGG 1613
Query 1617 CATGGAGGATAGAGAGAAGGTTCTATTGGATGAATACTCATCAGTACTaagagactatag 1676
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1614 CATGGAGGATAGAGAGAAGGTTCTATTGGATGAATACACATCAGTACTAAGGGACTATAG 1673
Query 1677 agaagtgaagagaaagttgagtgaagttgagaagaagaaCCGTGATGGCTTCTTTGAGCT 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 AGAAGTGAAGAGAAAGTTGAGTGAAGTTGAGAAGAAGAACCGTGATGGCTTCTTTGAGCT 1733
Query 1737 GGCATTGCAGTTGCGAGAGCTCAAGAATGCTGTTTCTTGCGAAGACGTGGATTTTCATTT 1796
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1734 GGCATTGCAGTTGAGAGAGCTCAAGAATGCTGTTTCTTGCGAAGACGTGGAATTTCATTT 1793
Query 1797 CTTACACCAGAAACCAGAATTGCCCGGCCAGGGTTTTCCTCATCCAGTAGAAAGAAACCG 1856
|||| ||||||||||||| |||||||| ||| || ||| |||||||||||||||| |||
Sbjct 1794 GTTACGCCAGAAACCAGAAATGCCCGGCAAGGATTCTCCGCATCCAGTAGAAAGAAGCCG 1853
Query 1857 GGCTGAAAGTGTGAGCATCTCTCATAGCTCTAACTCTTCATTCTCCATGCCACCACTTCC 1916
| |||||||| ||||||| | || ||||||||||||||||||||||||| ||||| ||
Sbjct 1854 GTCTGAAAGTTTGAGCATTTATCCTAGCTCTAACTCTTCATTCTCCATGGAACCACATCA 1913
Query 1917 TCAAAGAGGAGACTTGAAGAGAGCATCTGAACAAGAAAAGGAAGACGGGTTTAAGGTGAA 1976
||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1914 GCAAAGAGAAGACTTGAAGAGAGCATCTGAACAAGCAAAGGAAGACGGGGTTAAGGTGAA 1973
Query 1977 ATTTGCAGGCATTAGTGACAGCCTAAGAAAGAAAATTCCAACTGTGGAAGAAAAAGTGCG 2036
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1974 ATTTGCAGACATTAATGACAGCCTAAGAAAGAAAATTCCAACTGTGGAAGAAAAAGTGCG 2033
Query 2037 TGGAGATATTGATGCGGTGCTGGAAGAGAATATTGAATTCTGGTTAAGATTTAGCACATC 2096
|||||||||||| ||||||||||| |||||||| || ||||||||||||||||| |||||
Sbjct 2034 TGGAGATATTGACGCGGTGCTGGAGGAGAATATCGAGTTCTGGTTAAGATTTAGTACATC 2093
Query 2097 TGTTCATCAGATACAGAAGTACCACACATCAGTTCAAGACCTGAAAGCAGAGCTATCGAA 2156
|||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||
Sbjct 2094 TGTTCATCAGATACAGAAGTACCATACATCAGTTCAGGACCTGAAATCAGAGCTATCGAA 2153
Query 2157 AATTGAAAGCAAGCAACAAGGTAATGCTGGGAGCAGTAGTAACACTGCACTTGCATCAGA 2216
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 2154 AATTGAAAGCAAGCAACAAGGTAATGCTGGAAGCAGTAGTAACACTTCACTTGCATCAGA 2213
Query 2217 GGCAAAGCCTATATATAGACACCTTAGAGAGATTCGGACAGAGCTGCAGTTATGGCTAGA 2276
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2214 AGCAAAGCCTATATATAGACACCTTAGAGAGATTCGGACAGAGCTGCAGTTATGGCTAGA 2273
Query 2277 GAACAGTGCAATTCTGAGAGACGAACTTGAGGGTAGGTATGCAACACTTTGCAATATCAA 2336
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2274 GAACAGTGCAGTTCTGAGAGACGAACTTGAGGGTAGATATGCAACACTTTGCAATATCAA 2333
Query 2337 AGATGAAGTTTCAAGGGTCACGTCTCAATCGGGTGCAACTGAAGTAAGCAATACAGAGAT 2396
||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||
Sbjct 2334 AGATGAAGTTTCAAGGGTCACGTCTCAATCGGGTGGAACTAAAGTAAGCAGTACAGAGAT 2393
Query 2397 AAGAGGTTACCAGGCTGCAAAGTTCCATGGTGAGATACTTAACATGAAACAGGAGAACAA 2456
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2394 AAGCGGTTACCAGGCTGCAAAGTTCCATGGTGAGATACTTAACATGAAACAGGAGAACAA 2453
Query 2457 AAGGGTGTTCAACGAACTTCAAGCAGGCCTTGATCGTGCAAGAGCACTGAGAGCTGAAGT 2516
|| |||||||||||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 2454 AAAGGTGTTCAACGAACTTCAAGCAGGCCTTGATCGTGCAAAAACACTGAGAAATGAAGT 2513
Query 2517 GGAAAGAGTTGTATGCAAACTAGAAGAGAATCTTGGGATTTTGGATGGGACGGCTACAAG 2576
|||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct 2514 AGAAAGAGTTGTATGCAAACTAGAAGAGAATCTTGGGATCTTGAATGTGACGGCTACAAG 2573
Query 2577 ATCTCTGAGCAAGAGA-ATGC-CATCATCA-GCTGGAAAGCCTAGGATTCCACTAAGGTC 2633
|||||||||||||| | | | |||||||| | |||||||||||||||||||||||||||
Sbjct 2574 ATCTCTGAGCAAGA-ACAC-CTCATCATCAAG-TGGAAAGCCTAGGATTCCACTAAGGTC 2630
Query 2634 ATTCTTGTTTGGTGTCAAGTTAAAGAAGTATAAACAACAACCGAAGCAAACCTCAACAAT 2693
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2631 ATTCTTGTTTGGTGTCAAGTTAAAGAAGTATAAACAACAACCGAAGCAAGCCTCAACAAT 2690
Query 2694 CTTCTCTTGTGTCAGTCCATCTCCAGCTCTG-AACAAACAGTGTAGTTACATTATCCCAC 2752
||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||||
Sbjct 2691 CTTCTCTTGTGTCAGTCCATCTCCAGCTCTGCAA-AAACAGTGTAGCTACATTGTCCCAC 2749
Query 2753 CTGCAAAGCTCCCTGAATATGTCAAAAGAAGCTGA 2787
||| ||| ||||||||||||||||||||||||||
Sbjct 2750 CTGTGAAGGTCCCTGAATATGTCAAAAGAAGCTGA 2784
> Ahg475432 jgi|Araly1|475432|fgenesh2_kg.2__562__AT1G58210.1
Length=3864
Score = 538 bits (291), Expect = 8e-152
Identities = 736/940 (78%), Gaps = 74/940 (8%)
Strand=Plus/Plus
Query 1 ATGTTGCAGAGAGCAGCGAGCAATGCGTATTCATGGTGGTGGGCCAGCCACATACGCACA 60
|||||||||||||||||||||||||||||||||||||||||||| || || || || |||
Sbjct 999 ATGTTGCAGAGAGCAGCGAGCAATGCGTATTCATGGTGGTGGGCAAGTCATATCCGTACA 1058
Query 61 AAACAATCCAAATGGCTCGAACACAATCTCCAAGATATGGAGGAGAAGGTAAAGTACACA 120
|| |||||||||||||||||||||||||| || | || |||| || |||||
Sbjct 1059 AAGCAATCCAAATGGCTCGAACACAATCTTCA-G----GGT--AGAA--TA---TACAC- 1105
Query 121 CTTAAGATCATTGATGGAGATGGAGACAGTTTTGCTAAAAGAGCGGAGATGTATTACCGT 180
|||||||||| |||| ||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1106 -TTAAGATCATAGATGAAGATGGAGACACTTTTGCTAAAAGAGCTGAGATGTATTACCGT 1164
Query 181 AAAAGGCCAGAGATTGTCAATTTCGTGGAAGAAGCATTTCGTTCATACCGTGCTTTAGCA 240
|||||||| |||||||| ||||||||||| ||||| ||||| ||||||||||| |||||
Sbjct 1165 AAAAGGCCGGAGATTGTTAATTTCGTGGAGGAAGCTTTTCGGTCATACCGTGCCTTAGCT 1224
Query 241 GAACGCTATGATCATTTGTCCACAGAACTTCAAAGTGCCAATCATATGATCGCTACCGCT 300
||||| ||||||||||| || | ||| |||||||| || || | | ||||| || |||
Sbjct 1225 GAACGTTATGATCATTTATCTAGAGAGCTTCAAAGCGCAAACCGCACAATCGCCACAGCT 1284
Query 301 TTCCCTGAACATGTTCCA-TTTCCTCTTGTtg-atgat-g--atgacgatgatgatgatg 355
|||||||||||||||| | |||||| ||| | ||||| | |||| |||| ||| |||
Sbjct 1285 TTCCCTGAACATGTTC-AGTTTCCT-TTGGAGGATGATAGTGATGAAAATGAAGATTATG 1342
Query 356 at---AATCC-CAAGAAACCACCTAAGCATCTTCATCTCATTCCCA-GTGGAA-CTAACA 409
| ||||| | ||||| ||||||||||||||||| ||||||| | |||| | ||||
Sbjct 1343 AAGGGAATCCGCGT-AAACCGCCTAAGCATCTTCATCTTATTCCCAAG-GGAATC-AACA 1399
Query 410 TACCACAAGTCCCTGAGGTTCCCAAGAA-AGAG-TT-CAAGAGCCAATCTCTGATGGTGT 466
|||| |||| || || |||| ||||| | || || || ||| || ||| ||||| | |
Sbjct 1400 TACCTGAAGTTCCGGATATTCCAAAGAAGAAAGATTTCAGGAGTCAGTCTATGATG-T-T 1457
Query 467 TGTCGAGAAA-GGAACCTGGTGTTTTGCAAAG-----T-TCG---G-A-AA-CATCTT-- 511
||| ||||| ||| || | || | || |||| | || | | || ||
Sbjct 1458 -GTCTAGAAAAGGA-CCAGCTGGTCTGAAAAGGACAGTATCTTCTGCACAAGCAAAGAGG 1515
Query 512 ----CTGC-ATTGGTGAGTTCCGGATTGAGTAGAGAAGAGGCATTGGAGGAGATCGATAA 566
| || |||| || |||| |||||||||| |||||||| ||||| ||||| |||||
Sbjct 1516 GAAGCGGCGATTG-TGCGTTCGGGATTGAGTAAAGAAGAGGGTTTGGAAGAGATTGATAA 1574
Query 567 GATCCATAAGGGGATCTTGGTGCTGCAGACTGAGAAGGAGTTTGTGAGAAGTTCTTATGA 626
| | || ||||||||||||| | ||||||| ||||| ||||||||||| || || |||||
Sbjct 1575 GCTTCAGAAGGGGATCTTGGCGTTGCAGACCGAGAAAGAGTTTGTGAGGAGCTCATATGA 1634
Query 627 GCAGTCCTATGATAGGTATTGGAATTTGGAGAATGAAGTTGAA-GAAATGCAGAAGAGAG 685
||||| ||||| ||||||||| |||||||||||||||| || || ||||||||||| |
Sbjct 1635 ACAGTCTTATGAGAGGTATTGGGATTTGGAGAATGAAGT-GACTGAGATGCAGAAGAGCG 1693
Query 686 TTTGCAGTTTACAAGATGAGTTTGGGGTTGGTGGAGAGATCGAAGATGGTGAAGCTAGGA 745
|||| | ||||||||||||||||| |||||| ||| || ||| | || |||||||
Sbjct 1694 TTTGTAACTTACAAGATGAGTTTGGTCTTGGTGCTTCGATTGATGATAGCGATGCTAGGA 1753
Query 746 CGCTGG-TGGCAACCGCTGC-TCTAAGCTCTTGTAAAGAGACAATTGCTAAGCTTGAGGA 803
| || | |||| | | |||| | | || |||||||| || ||| ||||||||||||||||
Sbjct 1754 C-CTTGATGGCGAGCACTGCGT-TGAGTTCTTGTAAGGACACACTTGCTAAGCTTGAGGA 1811
Query 804 GACGCAGAAGCGATTT-TCTGAAGACGCCGGAA-TTGAGAA-GGAAAGGATTGA-TACTG 859
|| |||| | || | |||||| || |||| ||||||| |||| ||||| | |||||
Sbjct 1812 GAAACAGAGGAAATCGGT-TGAAGAAGC-GGAAATTGAGAAAGGAA-GGATT-ACTACTG 1867
Query 860 C-AACAGAAAGGTGTGAAGCACTGAAGAAAAAGTTTGAGA 898
| || |||| ||| | | ||| ||| ||| ||||||||||
Sbjct 1868 CGAA-AGAACGGTTTTATGCATTGAGGAACAAGTTTGAGA 1906
Score = 207 bits (112), Expect = 3e-52
Identities = 199/240 (83%), Gaps = 9/240 (4%)
Strand=Plus/Plus
Query 1587 AAACTGGAGGCAGTTGTTACCCGCAGATGGCATGGAGGATAGAGAGAAGGTTCTATTGGA 1646
||||||||||||||||||| | | ||||||||||||||||||||||||||||| || ||
Sbjct 2652 AAACTGGAGGCAGTTGTTA--C-CTGATGGCATGGAGGATAGAGAGAAGGTTCTGTTAGA 2708
Query 1647 TGAATACTCATCAGTACTaagagactatagagaagtgaagagaaagttgag-tgaagttg 1705
||||||| ||||||| |||| || ||||||||||| ||||||||||| || ||| ||||
Sbjct 2709 TGAATACACATCAGTGTTAAGGGATTATAGAGAAGTAAAGAGAAAGTT-AGGTGACGTTG 2767
Query 1706 agaagaagaaCCGTGATGGCTTCTTTGAGCTGGCATTGCAGTTGCGAGAGCTCAAGAATG 1765
|||| |||||||| || || ||||| ||| | ||||| |||||| |||| ||||||||||
Sbjct 2768 AGAAAAAGAACCGGGAAGGATTCTTCGAGTTAGCATTACAGTTGAGAGAACTCAAGAATG 2827
Query 1766 CTGTTTCTTGCGAAGACGTGGATTTTCATTTC-TTACACCAGAAAC-CAGAATTGCCCGG 1823
||||| ||| | |||||| || |||| | | |||| ||| |||| ||| | ||||||
Sbjct 2828 CTGTTGCTTACAAAGACGCAGAGATTCAGT-CGTTACGCCAAAAACTCAGC-TCGCCCGG 2885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105167166445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5