BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09730.1
Length=3386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471074 jgi|Araly1|471074|fgenesh2_kg.1__1028__AT1G09730.1 3051 0.0
> Ahg471074 jgi|Araly1|471074|fgenesh2_kg.1__1028__AT1G09730.1
Length=3182
Score = 3051 bits (1652), Expect = 0.0
Identities = 1972/2116 (93%), Gaps = 64/2116 (3%)
Strand=Plus/Plus
Query 1201 GACATGGAGGAGTTAAAGATTGCGGTAAAAGAACATAATTGGCCTAATAAGCAACAAAAG 1260
||||| ||||||||||||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct 1078 GACATTGAGGAGTTAAAGATTGCAGTAAAAGAACATAATTGGCCTGAGAAGCAACAAAAG 1137
Query 1261 ATAAACTCGCTGCATGTGAAATACCCGGCTGTGTGGAATACTGACCTCGAGGATGACGTG 1320
|||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1138 ATAAACTCCCTGCATGTGAAATACCCGGCTGTGTGGAATGCTGACCTCGAGGGTGACGTG 1197
Query 1321 GAAGTATCAGGGTATAACTTGAATCAACAGAAGCGTTATTTTCCAAGCTTTGATGAACCT 1380
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1198 GAAGTATCAGGGTATAACTTGAATCAACAGAAGCGTTACTTTCCAAGCTTTGATGAACCT 1257
Query 1381 TTTGAGGATGTTGTCTATCC-AAAGGGTGACCCAGATGCTGTTTCCATTTGCAAAAGAGA 1439
|||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct 1258 TTTGAGGATGTTGTCTATCCGAAA-GGAGACCCAGATGCTGTTTCCATTTGCAAAAGAGA 1316
Query 1440 TGTTGAGCTCTTGCAGCCAGAGACATTTGTAAATGACACAATCATTGACTTCTATATTAA 1499
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1317 TGTTGAGCTCTTGCAGCCAGAGACATTTGTGAATGACACAATCATTGACTTCTATATTAA 1376
Query 1500 TTATTTGAAGAATCAGATTCAAACGGAGGAAAAACATAGATTCCATTTCTTTAACAGCTT 1559
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TTATTTAAAGAATCAGATTCAAACGGAGGAAAAACATAGATTCCATTTCTTTAACAGCTT 1436
Query 1560 TTTCTTCCGGAAACTCGCTGATCTTGACAAAGATCCATCAAGTATAGCTGATGGAAAGGC 1619
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1437 TTTCTTCCGGAAACTTGCTGATCTCGACAAAGATCCATCAAGTATAGCTGATGGAAAGGC 1496
Query 1620 TGCTTTTCTACGTGTCCGAAAGTGGACAAGGAAAGTGGACATGTTTGGAAAGGACTACAT 1679
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1497 TGCTTTCCTACGTGTCCGTAAGTGGACAAGGAAGGTGGACATGTTTGGAAAGGACTACAT 1556
Query 1680 TTTTGTGCCTGTGAACTACAACCTTCACTGGAGTTTAATAGTCATATGCCACCCTGGTGA 1739
||| ||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1557 TTTCGTGCCGGTGAACTTCAACCTTCACTGGAGTTTAATAGTCATATGTCACCCTGGTGA 1616
Query 1740 AGTGGCTAATCGTACAGATCTAGACTTGGATGACTCaaaaaaaGTACCGTGCATATTACA 1799
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1617 AGTGGCTAATCGTACAGATCTAGACTTGGATGACTCGAAAAAAGTACCGTGCATATTACA 1676
Query 1800 TATGGATTCTATAAAAGGGAGCCATGCAGGGCTTAAAAATCTAGTCCAAACTTACTTGTG 1859
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1677 TATGGATTCTATAAAAGGGAGCCATGCAGGGCTTAAAAATCTAGTCCAAAGTTACTTGTG 1736
Query 1860 CGAGGAGTGGAAGGAGAGGCATAAAGAGACATCGGATGATATTTCTTCCAGATTCATGAA 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 CGAGGAGTGGAAGGAGAGGCATAAAGAGACATCGGATGATATTTCTTCCAGATTCATGAA 1796
Query 1920 TTTGCGGTTTGTCTCACTTGAGTTGCCACAGCAGGAAAACTCATTTGACTGTGGCCTCTT 1979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 TTTGCGGTTTGTCTCACTTGAGTTGCCACAGCAGGAAAACTCATTTGACTGTGGCCTCTT 1856
Query 1980 TCTGCTGCACTATCTGGAGCTATTTCTTGCTGAAGCTCCCCTTAATTTTAGTCCTTTCAA 2039
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1857 TCTGCTGCACTATCTAGAGCTATTTCTTGCTGAAGCTCCCCTTAATTTTAATCCTTTCAA 1916
Query 2040 GATATATAATGCTTCCAACTTTCTTTATCTGAACTGGTTTCCTCCTGCCGAGGCATCATT 2099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 GATATATAATGCTTCCAACTTTCTTTATCTGAACTGGTTTCCTCCTGCCGAGGCATCATT 1976
Query 2100 GAAGCGTACTCTGATTCAGAAGTTAATATTTGAACTCCTTGAAAACCGGTCACGGGAAGT 2159
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1977 GAAGCGTACTCTAATTCAGAAGTTAATTTTTGAACTCCTTGAAAACCGGTCACGGGAAGT 2036
Query 2160 TAGTAATGAACAAAACCAGTCCTGTGAAAGTCCAGTTGCCGTCAATGACGATATGGGCAT 2219
|||||||||||| ||||||||||| |||||||||||||||||||||||| ||| ||||||
Sbjct 2037 TAGTAATGAACAGAACCAGTCCTGCGAAAGTCCAGTTGCCGTCAATGACAATACGGGCAT 2096
Query 2220 TGAGGTTCTCTCTGAGAGATGCAGCCCCCTAATAGACTGTAACGGGGATATGACACAGAC 2279
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 2097 TGAGGTTCTCTCTGAGAGATGCAGCCCCCTGATAGACTGTAACGGGAATATGACACAGAC 2156
Query 2280 GCAAGACGATCAAGGAATCGAAATGACTTTGCTTGAAAGATCTTCCATGAGGCACATACA 2339
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2157 GCAAGATGATCAAGGAATCGAAATGACTTTGCTTGAAAGATCTTCCATGAGGAACATACA 2216
Query 2340 AGCTGCTAATGATTCGGGTATGGTACTAAGAGATTTATTCGATTCAGGATCCAATAACAC 2399
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 2217 AGCTGCTAATGATTCGGGTATGGTACTAAGAGATTTATTCGATTCTGGAGCCAACAACAC 2276
Query 2400 AGGATCATTACTTGAACAACTACAACAACCATTCGAGGATCCGTCTTCGTTTTATCATCT 2459
|||||||||||||| |||||||||| ||||||||||||| || |||||||||||||||||
Sbjct 2277 AGGATCATTACTTGTACAACTACAAGAACCATTCGAGGAACCATCTTCGTTTTATCATCT 2336
Query 2460 TAGTAACGACTCGTCGGCAAGAGAGCAAGTGGACATGGAAACTGGTGAACAGTTTATGTG 2519
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2337 TAGTAACGACTCGTTGGCAAGAGAGCAAGTGGACATGGAAACTGGTGAACAATTTATGTG 2396
Query 2520 TTTGAACGCTGGAGAGGGCAACTTTCAATGCATCACGGAAACTACCTCTCCGAGAGCATC 2579
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 2397 TTTGAACGCTGGAGAGGGCAACTTTCAATGCATCACTGAAACTGCCTCTCCGAGAGCATC 2456
Query 2580 TAATTCATTCTCTTCATGGAACCTTGGTATTCCCCTGGTGCAGAAGGAAGACGAGACTGA 2639
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2457 TAATTCATTCACTTCATGGAACCTTGGTATTCCCCTGGTGCAGAAGGAAGATGAGACTGA 2516
Query 2640 TTTGTTATCTGAAACTTCGAATAG---TTCTAATGATTCA-A---T--CGGTATCATAGA 2690
||||||||||||||||||||| || ||||||||||||| | | ||||||||||||
Sbjct 2517 TTTGTTATCTGAAACTTCGAAAAGCACTTCTAATGATTCAGAAGATATCGGTATCATAGA 2576
Query 2691 AGACAACCCAATAGAAAATACTCATGAAGAAGAAATCGACGAGAGTCCTCCAAGAGAGAC 2750
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 2577 AGACAACCAAATAGAAAATACTCATGAAGGAGAAATCGGCGAGAGTCCTCCAAGAGAGAC 2636
Query 2751 CGTCTCTTTAAAATCTGCAACCGTGGGTTCTAACACTGCTGACCATACCACTGAGAATGA 2810
||||||||||| |||||| || |||||||||||||||| |||||| ||||||||||||
Sbjct 2637 CGTCTCTTTAATATCTGCTACAGTGGGTTCTAACACTG---ACCATAACACTGAGAATGA 2693
Query 2811 AGAGCCCGTTTCTACACACATTGAGCTTGTTGTTCCATCGAGTCA-GAATGACAGAGATG 2869
||||| ||||||||| || ||||||||||||||||||||||||| || |||| ||||||
Sbjct 2694 AGAGCTCGTTTCTACTCATGTTGAGCTTGTTGTTCCATCGAGTCAAGA-TGACGGAGATG 2752
Query 2870 AGGAGAAGCCATTGGAGCATGATCTTGAAATTGGGGACAAGACGAGTGAAGATGTTGGAG 2929
||||||||||| |||||||||||| |||||||||||||||| |||||||||||| |||||
Sbjct 2753 AGGAGAAGCCAGTGGAGCATGATCCTGAAATTGGGGACAAGGCGAGTGAAGATGATGGAG 2812
Query 2930 ATGATTGTGATCAAAAGGAGCCAATGGAAGAAGAAGATGAGAAGCGAGCTGCAAAACGGC 2989
|||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 2813 ATGAGTGTGATCAGAAGGAGCCAATGGAGGAAGAAGAGGAGAAGCGAGCTGCAAAACGGC 2872
Query 2990 CGAGGCTATCATCTCCCACTGGCGAAGCTGAGGAGATGGAGAAATAGAGATTGTGTGGGC 3049
| ||||| |||||| |||||| |||||||||||||| | | ||||||||| |||| |
Sbjct 2873 CAAGGCTGTCATCTTCCACTGACGAAGCTGAGGAGA---A-A--TAGAGATTGGGTGG-C 2925
Query 3050 TAT-ATC-AACACACCACGGGTTTTGTGTTGGG-TCTTGGATGGTTAGACGACTTAGAGG 3106
||| | | ||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 2926 TATCAACGAACACACCACGGGTTTTGTGTTGGGGTCTTGGATGGTTAGAC---TTAGAGT 2982
Query 3107 GTTTATATCAAACCA-C-C-TTTAGGAAGTGTTTATAACGTTGTAGGAGTATTTTACGAA 3163
|||||||||||||| | | ||||||| ||||||||| |||||||||||| ||||| |
Sbjct 2983 ATTTATATCAAACCAACACCTTTAGGACGTGTTTATATCGTTGTAGGAGTTTTTTA--A- 3039
Query 3164 GAAAAAGGAAAGAATAACGTCTTTCATCGTTTTTTATGTAAAATTTCGATACGTTAACTT 3223
||| | ||| ||| | ||| | | |||||||||||||||||||||||
Sbjct 3040 GAA---G-AAA-AAT----T-TTT--T--T-------GTAAAATTTCGATACGTTAACTT 3078
Query 3224 AAGAGGGTTGATGAATATAT--AGCCCATTTTGTGGTTTTTATTTGAGGTTCTTCCGAGT 3281
| | || ||||||||||||| |||| ||||||||||||| |||||||||||||||||||
Sbjct 3079 A-G-GG-TTGATGAATATATTTAGCC-ATTTTGTGGTTTT-ATTTGAGGTTCTTCCGAGT 3133
Query 3282 AATTTTTTACATATAT 3297
||||||| || |||||
Sbjct 3134 AATTTTT-ACGTATAT 3148
Score = 952 bits (515), Expect = 0.0
Identities = 619/669 (93%), Gaps = 8/669 (1%)
Strand=Plus/Plus
Query 145 ATGAAGAAAAACTTTGAAGTATTCGATTTCAAAGAAGAGGACGAGCTCGCTGAGTCTGCA 204
|||||||||||| | ||||| ||||||||||| ||||||||||||||| ||||| |||||
Sbjct 1 ATGAAGAAAAACATGGAAGTCTTCGATTTCAACGAAGAGGACGAGCTCCCTGAGCCTGCA 60
Query 205 GCTGGAAAGTTATTGGAAAAATTCACAAACCCTAGTCCTTGCAATTCTCCGGTTCTGCAA 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTGGAAAGTTATTGGAAAAATTCACAAACCCTAGTCCTTGCAATTCTCCGGTTCTGCAA 120
Query 265 CGCCAACGCATCCAAAGCTTCTGCAATGAAAAACGTGTTGAGGAA-GAAGAAATGGAAGG 323
|||||||||||||| |||||||||||||||||| ||| | | ||| ||||||||||||||
Sbjct 121 CGCCAACGCATCCACAGCTTCTGCAATGAAAAAAGTGATCA-GAAGGAAGAAATGGAAGG 179
Query 324 TCCAAGTTGTGCAGAGCCTGCTACTGCTGTAGAGTCT-GACGATCATCAATGTGAAGATG 382
||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct 180 TCCAAGTTGTGCAGAGCCTGCTACTGCTGTAGAGT-TAGACGATCGTCAATGTGAAGATG 238
Query 383 ATTCGACTTTGGTAACAGAAGCTAAGGAGTCCAGAACGATTCTCACATTT-GGTTTGGAA 441
| ||||||| |||||||||||| ||||||||||||||| |||||||||| || ||||||
Sbjct 239 CTCCGACTTTTGTAACAGAAGCTGAGGAGTCCAGAACGAGTCTCACATTTCGG-TTGGAA 297
Query 442 ACCACTGACCATTTAGAAGAAACAGATGCAGAGCACGTTAATCAGGGATTGATGTTAGGT 501
|||| |||||||||| ||||||||||||| || ||||||||||| ||||||||||| |||
Sbjct 298 ACCAGTGACCATTTAAAAGAAACAGATGCCGATCACGTTAATCATGGATTGATGTTTGGT 357
Query 502 TTAAAAACTGAAGACCTGGCAAAGGAAACAGAT-ATAGATCACGATAACCATGGATTGAT 560
|| || ||||||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 358 TTGAATACTGAAGACCTGGCAAAGGAAACAGATGA-AGATCAAGATAACCATGGATTGAT 416
Query 561 GTTTGGTTTGAATAGCGAAGACGACATAGAAGAAACAGATGTGGATCATAGAGTGGAGAG 620
|||||||||||||| ||||||| ||||||||||||| ||||| |||||| || | || ||
Sbjct 417 GTTTGGTTTGAATACCGAAGACCACATAGAAGAAACTGATGTAGATCATGGATTAGAAAG 476
Query 621 TTTCTCTTGCCAGCTAGGCGGAAATAGTTTTTACGCTGAAACTTCATCTTATAGTCAACG 680
|||||||||| ||| |||| ||| ||||||||||||||||||||| || |||||||||||
Sbjct 477 TTTCTCTTGCGAGCCAGGCAGAAGTAGTTTTTACGCTGAAACTTCGTCATATAGTCAACG 536
Query 681 CCAGCTAAACTCACCCTTTTCAGATTCTTCATCCAGTGAGGAGCAAATTGATATGATGTC 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CCAGCTAAACTCACCCTTTTCAGATTCTTCATCCAGTGAGGAGCAAATTGATATGATGTC 596
Query 741 AGCTATTGATGAAAGCTTGAGTGATCGATCTGCGTTGAGTGAAGCTTCTGATTCAGAAGA 800
|||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 597 AGCTATTGATGAAAGCTTGAGTGATCGATCTGCGTTAAGTCAAGATTCTGATTCAGAAGA 656
Query 801 TGATGAAGA 809
|||||||||
Sbjct 657 TGATGAAGA 665
Score = 451 bits (244), Expect = 1e-125
Identities = 281/298 (94%), Gaps = 5/298 (2%)
Strand=Plus/Plus
Query 905 AAGATTGGATGACTGAACATTGCTTCAACGATG-AGGAAAAGATTGACTTAAGCACCGCT 963
||||||||||| ||||||| ||||| ||||| | |||||||||||| |||||||||||
Sbjct 662 AAGATTGGATGGCTGAACA---CTTCAGCGATGTA-GAAAAGATTGACCTAAGCACCGCT 717
Query 964 GTTATAATGACTTCGGAGTATGTTATACTTAAGGATATGCATTGTGCTGCATCCCTAGTA 1023
||| |||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||
Sbjct 718 GTTGTAATGACTTCGGAGTATGCTATACTAAAGGATATGCATTGTGCTGCATCTCTAGTA 777
Query 1024 ATCTTTTCATGCAATGGCATCAAAATAAAGAGTTTCCTCGCAAATAATGAAGAAGTGCCA 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 778 ATCTTTTCATGCAATGGCATCAAAATAAAGAGTTTCCTCGCAAATAATGAAGAAGGGCCA 837
Query 1084 TTTTCTTGTGAATTTGGAGTTGAAGACATAGTTAGTATTCAATACAATTGGTACCAAAAT 1143
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 838 TTTTCTTGTGAATTTGGTGTTGAAGACATTGTTAGTATTCAATACAATTGGTACCAAAAT 897
Query 1144 GTTGGATTGATCATTCTCAGAATTCGAGTTCTACTGAAGGATGAAAATTGCCATGAAG 1201
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 898 GTTGGATTGATCATTCTCAGACTTCGAGTTCTACTGAAGGATGAAAAATGCCATGAAG 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127835387707
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5