BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09740.1
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471075 jgi|Araly1|471075|fgenesh2_kg.1__1029__AT1G09740.1 1022 0.0
> Ahg471075 jgi|Araly1|471075|fgenesh2_kg.1__1029__AT1G09740.1
Length=687
Score = 1022 bits (553), Expect = 0.0
Identities = 646/689 (94%), Gaps = 13/689 (2%)
Strand=Plus/Plus
Query 1 CTCTTGAACTTTCCAAGAGTTGAAGAAAATCACAGAAAGCCTTAGCACAGAGAAGAGAGA 60
||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1 CTCTTGAACGTTCCAAGAGTTGAAGAAAATCACAAAAAAACTTAGCACAGAGAAGAGAGA 60
Query 61 TTGAAGAAGTCATGGATGTTTCAGGAAGCTTGAATTGCGTTGTTGTGGCGGTAGATGGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 TTGAAGAAGTCATGGATGTTTCAGGAAGCTTGAATTGCGTTGTTGTGGCTGTAGATGGAA 120
Query 121 GCGAGGTGAGTATGGAAGCTCTGAGGTGGGCTCTAGACAACCTCAAGCTCTCTTCGTCTT 180
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 121 GCGAGGTGAGTATGGAAGCTCTGAGGTGGGCCCTAGACAACCTCAAGCTCTCATCGTCTT 180
Query 181 CTTCCGATTCATCATTCGTCGTGCTCCACGTCCAGCCGTCGCCTTCTGTAGCCGCCGGCG 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 CTTCCGATTCATCATTCGTCGTGCTCCACGTCCAGCCGTCGCCTTCTGTTGCCGCCGGCG 240
Query 241 TGAGTCCCGGCACCATACCTTTCGGTGGTCCCAGTGGTCTTGAGGTTCCTGCTTTCACTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGAGTCCCGGCACCATACCTTTCGGTGGTCCCAGTGGTCTTGAGGTTCCTGCTTTCACTG 300
Query 301 CTGCAATCGAGCAACACCAGAAGCGGATCACCGACACCATCCTCGAACACGCTAGTCAAA 360
||||||||||||||||||||||||| |||||||| || |||||||||||||||| ||| |
Sbjct 301 CTGCAATCGAGCAACACCAGAAGCGAATCACCGATACTATCCTCGAACACGCTAATCAGA 360
Query 361 TTTGTGCTGAAAAATCTGTGAATGTGAAAACACAAGTGGTTATTGGGGATCCCAAGTATA 420
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 361 TTTGTGCTGAAAAATCTGTGAATGTGAAAACAAAAGTGGTTGTTGGGGATCCCAAGTATA 420
Query 421 AAATCTGCGAAGCTGTAGAGAATTTGCATGCTGATCTTCTTGTCATGGGCTCCCGGGCTT 480
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 421 AGATCTGCGAAGCTGTAGAGAATTTGCATGCTGATCTGCTTGTCATGGGTTCCCGGGCTT 480
Query 481 ATGGCCGCATTAAGAGAATGTTTCTGGGAAGTGTAAGCAACTACTGCACCAACCACGCCC 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 481 ATGGCCGCATTAAGAGGATGTTTCTGGGAAGTGTAAGCAACTACTGCACCAACCATGCGC 540
Query 541 ATTGTCCTGTTGTGATAATCAAACCAAAAGAGGATTCTTCTGCATAAAGAGGA--T---- 594
|||| |||||||||||||| |||||||||||||||||||| |||||| |||| |
Sbjct 541 ATTGCCCTGTTGTGATAATTAAACCAAAAGAGGATTCTTCGGCATAACCAGGAGCTTGTC 600
Query 595 A-TATATGTACATATGCAAAGGGATATC-AAGACCATCTGT--AATCTTT-TGAAGTTTT 649
| |||||||||||||||||| ||||||| ||| |||||| | ||| ||| |||||||||
Sbjct 601 AATATATGTACATATGCAAAAGGATATCGAAG-CCATCTTTTTAAT-TTTGTGAAGTTTT 658
Query 650 GTGAAGCTATAGAAGCCAAGCAAGAATTC 678
|||||||||| ||||| ||||||||||||
Sbjct 659 GTGAAGCTATGGAAGCAAAGCAAGAATTC 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31184546106
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5