BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G09760.1
Length=1190
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471077 jgi|Araly1|471077|fgenesh2_kg.1__1031__AT1G09760.1 1644 0.0
> Ahg471077 jgi|Araly1|471077|fgenesh2_kg.1__1031__AT1G09760.1
Length=1132
Score = 1644 bits (890), Expect = 0.0
Identities = 1057/1132 (93%), Gaps = 34/1132 (3%)
Strand=Plus/Plus
Query 64 CGAAGCAGTAAAACCCTAGTAGAATAATGGTGAAGCTCACGGCTGATTTGATCTGGAAAA 123
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 20 CGAAGCAGTAAAACCCTAGTAGAATAATGGTGAAGCTCACAGCTGATTTGATCTGGAAAA 79
Query 124 GTCCTCACTTCTTCAATGCTATCAAGGAGCGAGAATTGGATCTACGAGGTAACAAGATTC 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 GTCCTCACTTCTTCAATGCTATCAAGGAGCGAGAATTGGATCTACGAGGTAACAAGATTC 139
Query 184 CTGTAATCGAAAACTTGGGTGCTACTGAGGACCAGTTCGATACCATTGATCTGTCTGATA 243
|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 140 CTGTAATCGAAAACTTGGGTGCTACTGAGGACCAATTCGATACAATTGATCTTTCTGATA 199
Query 244 ACGAGATAGTTAAGCTAGAAAACTTCCCATACCTCAACCGTTTAGGAACTTTACTCATCA 303
| ||||| ||||||||||||||||| || ||||||||||| ||||||||||| |||||||
Sbjct 200 ATGAGATCGTTAAGCTAGAAAACTTTCCTTACCTCAACCGCTTAGGAACTTTGCTCATCA 259
Query 304 ATAACAATCGTATCACCCGGATAAATCCTAACCTTGGAGAATTCCTACCGAAGCTTCACT 363
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 260 ATAACAATCGTATCACCCGGATAAATCCTAACCTTGGAGAATTCCTGCCGAAGCTTCACT 319
Query 364 CTTTGGTTCTTACAAATAACAGGCTTGTGAATTTGGTTGAGATTGATCCCCTTGCCTCCA 423
||||||||||||| |||||||||||||||||| ||||||| ||||| |||||| ||||||
Sbjct 320 CTTTGGTTCTTACTAATAACAGGCTTGTGAATCTGGTTGAAATTGACCCCCTTACCTCCA 379
Query 424 TTCCCAAGCTGCAGTACCTTAGTTTGTTGGATAATAATATCACCAAAAAGGCAAATTATC 483
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 380 TTCCCAAGCTGCAGTACCTTAGTTTGTTGGATAATAATATCACCAAAAAGCCAAATTATC 439
Query 484 GCCTTTATGTGATTCACAAGCTAAAATCACTTCGAGTACTGGATTTCATTAAAATCAAAG 543
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 440 GCCTTTATGTGATTCACAAGCTAAAATCACTTCGAGTACTGGATTTCATAAAAATCAAAG 499
Query 544 CCAAGGAGAGAGCTGAAGCTGCATCTTTGTTTTCATCCAAAGAAGCAGAAGAGGAAGTTA 603
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 500 CCAAGGAGAGAGCTGAAGCTGCAGCTTTGTTTTCATCCAAAGAAGCAGAAGAGGAAGTTA 559
Query 604 A-AAAGGTTTCTCGGGAGGAGGTTAAAAAAGTGTCAGAAACTGCAGAAAATCCAGAGACT 662
| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 560 AGAAAG-TTTCTCGGGAGGAGGTTAAAAAAGTGCCAGAAACTGCAGAAAATCCAGAGACT 618
Query 663 CCGAAAGTGGTGGCGCCAACAGC-GGAGCAAATATTAGCTATCAAGGCTGCAATTATCAA 721
||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 619 CCGAAAGTGGTGGCGCCAACA-CAGGAGCAAATATTAGCGATCAAGGCTGCAATTATCAA 677
Query 722 TTCTCAGACGATAGAAGAAATTGCCAGACTCGAACAGGCTTTGAAGTTTGGACAGGTTCC 781
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 678 TTCTCAGACGATAGAGGAAATTGCCAGACTCGAACAGGCTTTGAAGTTTGGCCAGGTTCC 737
Query 782 TGCTGGCCTGATAATTCCTGATCCGGCCACAAATGACTCTGCTCCCATGGAGGAATAGAA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TGCTGGCCTGATAATTCCTGATCCGGCCACAAATGACTCTGCTCCCATGGAGGAATAGAA 797
Query 842 AGCGTGACTGTTGCCCCTCCAATCGTTGTAGCTACTGCTCCAGAATGCTCACAGCAATTG 901
|| ||| |||||||| |||||||||||||||| |||||| ||||||||||||||||||
Sbjct 798 AGTGTGGCTGTTGCC--TCCAATCGTTGTAGCTGCTGCTCGAGAATGCTCACAGCAATT- 854
Query 902 TTTTCTCTGGCAATCCTGTACGGTTTCTGTCACTTCCTTAGGAACTCATGCGCAACAGTT 961
| ||| || | | |||||||||||||||||||||||||||||||||||||
Sbjct 855 ----C-CTGT-AA----G-A---TTTCTGTCACTTCCTTAGGAACTCATGCGCAACAGTT 900
Query 962 GGA---A-CCTGTAAACTATTTACTGCTCGAGGCATCTGTTTT-GAACCCTTAAAAAGAA 1016
||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 901 GGATTGAACCTGTAAACTATTTACTGCTCGAGGCATCTGTTTTTGAACCCTTAAAAAGAA 960
Query 1017 TGCCAAAGAGGATTGTAGTCTTT-TTAAGTCTCTGCATTGGCAT-G-GAGAGCGAG-GG- 1071
|| ||||||||||||||||||| ||||||||||||||||||| | ||||| ||| ||
Sbjct 961 TGGCAAAGAGGATTGTAGTCTTAATTAAGTCTCTGCATTGGCACAGAGAGAGAGAGAGGG 1020
Query 1072 --T-GCACACAGAATTTGCTTATGCTCTTTTCGCATTAGAATTTCTTCTTAGTATTTTGT 1128
| |||||||| |||||||||||||||||||||| || | ||||||| || ||||||||
Sbjct 1021 GGTTGCACACAGTATTTGCTTATGCTCTTTTCGCACTATAGTTTCTTCATATTATTTTGT 1080
Query 1129 ATCTTGTCACTCAATATCATCAATTACCGAGAAACTAATTTAGAAAAGAAAT 1180
|||| |||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1081 ATCTCGTCACTGAATATCATCAATTACTGAGAAACTAATTTAGAAAAGAAAT 1132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44413198305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5